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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IKBKG is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
34.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
194.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
188.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
170.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
164.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
141.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
115.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
113.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
108.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
107.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
107.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
102.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
101.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
101.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
99.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
98.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
97.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
95.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
90.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
88.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
86.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
82.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
81.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
79.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
78.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
77.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
74.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
74.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
74.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
74.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
72.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
70.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
69.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
69.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
63.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
62.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
61.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
60.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
60.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
59.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
59.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
58.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
58.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
57.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
57.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
56.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
56.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
55.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
55.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
55.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
54.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
54.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
54.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
54.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
54.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
54.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
51.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
51.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
51.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
51.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
50.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
50.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
50.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
49.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
49.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
49.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
48.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
48.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
48.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
48.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
48.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
48.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
47.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
47.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
47.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
47.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
47.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
46.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
46.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
46.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
45.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
45.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
45.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
45.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
44.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
44.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
44.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
44.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
44.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
44.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
43.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
42.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
42.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
42.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
41.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
41.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
41.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
41.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
41.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
41.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
41.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
41.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
40.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
39.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
39.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
39.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
39.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
38.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
38.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
37.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
37.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
37.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
36.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
36.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
35.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
35.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
35.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
35.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
34.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
34.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
34.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
34.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
33.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
33.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
33.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
33.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
33.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
32.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
32.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
32.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
32.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
32.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
31.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
31.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
31.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
31.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
31.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
31.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
31.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
31.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
31.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
30.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
30.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
30.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
30.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
30.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
30.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
30.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
30.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
29.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
29.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
29.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
29.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
29.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
28.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
28.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
28.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
28.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
28.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
28.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
28.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
28.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
28.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
28.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
27.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
27.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
27.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
27.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
26.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
26.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
26.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
26.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
25.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
25.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
25.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
25.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
25.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
25.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
25.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
24.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
24.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
24.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
24.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
24.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
24.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
24.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
24.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
24.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
24.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
24.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
24.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
24.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
23.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
23.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
23.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
23.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
23.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
23.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
23.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
23.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
23.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
23.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
22.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
22.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
22.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
22.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
21.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
21.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
21.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
21.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
20.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
20.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
20.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
20.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
20.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
20.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
20.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
20.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
20.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
18.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
18.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
18.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
18.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
17.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
17.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
17.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
16.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
16.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
15.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
14.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
13.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
13.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
11.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IKBKG is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.4
Number of samples
231
Samples
Sample
Description
TPM
DO50816
0 years, male, NA, stage:2, alive, 390 days
94.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
92.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
56.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
51.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
50.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
49.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
40.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
38.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
38.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
37.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
33.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
33.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
32.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
31.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
30.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
28.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
28.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
28.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
28.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
27.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
26.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
26.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
26.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
26.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
26.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
24.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
22.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
21.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
21.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
20.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
20.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
20.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
20.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
17.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
16.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
16.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
3.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
2.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
2.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
685
Tumor
1.2
231
Tumor
1.0
1013
Tumor
0.9
724
Normal
0.7
497
Tumor
0.7
473
Tumor
0.7
913
Tumor
0.7
375
Tumor
0.6
697
Tumor
0.6
527
Tumor
0.6
861
Tumor
0.6
311
Tumor
0.5
917
Tumor
0.5
981
Tumor
0.5
525
Tumor
0.5
573
Tumor
0.5
617
Tumor
0.5
471
Tumor
0.5
1027
Tumor
0.5
493
Tumor
0.4
533
Tumor
0.4
883
Tumor
0.4
395
Tumor
0.4
865
Tumor
0.4
211
Tumor
0.4
145
Tumor
0.4
957
Tumor
0.4
813
Tumor
0.4
923
Tumor
0.4
745
Tumor
0.4
943
Tumor
0.4
1041
Tumor
0.4
911
Tumor
0.4
492
Normal
0.4
851
Tumor
0.4
137
Tumor
0.4
1025
Tumor
0.4
535
Tumor
0.4
567
Tumor
0.3
755
Tumor
0.3
483
Tumor
0.3
978
Normal
0.3
963
Tumor
0.3
915
Tumor
0.3
814
Normal
0.3
411
Tumor
0.3
857
Tumor
0.3
491
Tumor
0.3
977
Tumor
0.3
953
Tumor
0.3
951
Tumor
0.3
367
Tumor
0.3
925
Tumor
0.3
478
Normal
0.3
451
Tumor
0.3
983
Tumor
0.3
966
Normal
0.3
536
Normal
0.3
916
Normal
0.3
213
Tumor
0.2
741
Tumor
0.2
415
Tumor
0.2
663
Tumor
0.2
223
Tumor
0.2
518
Normal
0.2
481
Tumor
0.2
881
Tumor
0.2
343
Tumor
0.2
524
Normal
0.2
498
Normal
0.2
477
Tumor
0.2
537
Tumor
0.2
965
Tumor
0.2
455
Tumor
0.2
283
Tumor
0.2
427
Tumor
0.2
351
Tumor
0.2
557
Tumor
0.2
661
Tumor
0.2
713
Tumor
0.2
383
Tumor
0.2
975
Tumor
0.2
267
Tumor
0.2
823
Tumor
0.2
191
Tumor
0.2
171
Tumor
0.2
817
Tumor
0.2
641
Tumor
0.2
355
Tumor
0.2
1021
Tumor
0.2
785
Tumor
0.1
873
Tumor
0.1
976
Normal
0.1
161
Tumor
0.1
268
Normal
0.1
513
Tumor
0.1
721
Tumor
0.1
261
Tumor
0.1
937
Tumor
0.1
523
Tumor
0.1
553
Tumor
0.1
443
Tumor
0.1
444
Normal
0.1
815
Tumor
0.1
224
Normal
0.1
545
Tumor
0.1
968
Normal
0.1
271
Tumor
0.1
297
Tumor
0.1
563
Tumor
0.1
926
Normal
0.1
421
Tumor
0.1
538
Normal
0.1
434
Normal
0.1
147
Tumor
0.1
921
Tumor
0.1
387
Tumor
0.1
1028
Normal
0.1
958
Normal
0.1
113
Tumor
0.1
123
Tumor
0.1
778
Normal
0.1
195
Tumor
0.1
285
Tumor
0.1
447
Tumor
0.1
526
Normal
0.1
516
Normal
0.0
955
Tumor
0.0
867
Tumor
0.0
738
Normal
0.0
874
Normal
0.0
912
Normal
0.0
262
Normal
0.0
918
Normal
0.0
413
Tumor
0.0
217
Tumor
0.0
365
Tumor
0.0
494
Normal
0.0
112
Tumor
0.0
425
Tumor
0.0
528
Normal
0.0
952
Normal
0.0
852
Normal
0.0
221
Tumor
0.0
188
Normal
0.0
467
Tumor
0.0
257
Tumor
0.0
474
Normal
0.0
185
Tumor
0.0
728
Normal
0.0
312
Normal
0.0
187
Tumor
0.0
135
Tumor
0.0
284
Normal
0.0
125
Tumor
0.0
964
Normal
0.0
982
Normal
0.0
461
Tumor
0.0
514
Normal
0.0
723
Tumor
0.0
391
Tumor
0.0
313
Tumor
0.0
938
Normal
0.0
1026
Normal
0.0
924
Normal
0.0
331
Tumor
0.0
222
Normal
0.0
665
Tumor
0.0
863
Tumor
0.0
635
Tumor
0.0
363
Tumor
0.0
647
Tumor
0.0
432
Normal
0.0
1015
Tumor
0.0
868
Normal
0.0
212
Normal
0.0
463
Tumor
0.0
984
Normal
0.0
192
Normal
0.0
816
Normal
0.0
412
Normal
0.0
272
Normal
-0.1
214
Normal
-0.1
627
Tumor
-0.1
558
Normal
-0.1
1043
Tumor
-0.1
366
Normal
-0.1
922
Normal
-0.1
696
Normal
-0.1
258
Normal
-0.1
1042
Normal
-0.1
368
Normal
-0.1
744
Normal
-0.1
362
Normal
-0.1
956
Normal
-0.1
142
Normal
-0.1
484
Normal
-0.1
864
Normal
-0.1
431
Tumor
-0.1
1045
Tumor
-0.1
384
Normal
-0.1
554
Normal
-0.1
488
Normal
-0.1
228
Normal
-0.1
715
Tumor
-0.1
353
Tumor
-0.1
1044
Normal
-0.1
574
Normal
-0.1
662
Normal
-0.1
361
Tumor
-0.1
465
Tumor
-0.1
232
Normal
-0.1
364
Normal
-0.1
218
Normal
-0.1
138
Normal
-0.1
462
Normal
-0.1
277
Tumor
-0.1
396
Normal
-0.1
564
Normal
-0.1
1032
Normal
-0.1
954
Normal
-0.1
1031
Tumor
-0.1
878
Normal
-0.1
534
Normal
-0.1
286
Normal
-0.1
227
Tumor
-0.1
944
Normal
-0.1
127
Tumor
-0.1
472
Normal
-0.1
1022
Normal
-0.1
1046
Normal
-0.1
328
Normal
-0.1
742
Normal
-0.1
698
Normal
-0.2
482
Normal
-0.2
464
Normal
-0.2
162
Normal
-0.2
354
Normal
-0.2
882
Normal
-0.2
671
Tumor
-0.2
146
Normal
-0.2
686
Normal
-0.2
414
Normal
-0.2
666
Normal
-0.2
672
Normal
-0.2
172
Normal
-0.2
914
Normal
-0.2
452
Normal
-0.2
862
Normal
-0.2
422
Normal
-0.2
446
Normal
-0.2
546
Normal
-0.2
716
Normal
-0.2
385
Tumor
-0.2
468
Normal
-0.2
386
Normal
-0.2
126
Normal
-0.2
714
Normal
-0.2
884
Normal
-0.2
131
Tumor
-0.2
866
Normal
-0.2
278
Normal
-0.2
756
Normal
-0.2
196
Normal
-0.2
136
Normal
-0.2
786
Normal
-0.2
416
Normal
-0.2
433
Tumor
-0.2
824
Normal
-0.2
186
Normal
-0.2
428
Normal
-0.2
448
Normal
-0.2
298
Normal
-0.2
568
Normal
-0.2
148
Normal
-0.2
858
Normal
-0.2
664
Normal
-0.2
356
Normal
-0.2
352
Normal
-0.2
376
Normal
-0.2
141
Tumor
-0.2
332
Normal
-0.2
423
Tumor
-0.2
572
Normal
-0.2
648
Normal
-0.3
327
Tumor
-0.3
426
Normal
-0.3
642
Normal
-0.3
746
Normal
-0.3
615
Tumor
-0.3
358
Normal
-0.3
722
Normal
-0.3
1014
Normal
-0.3
392
Normal
-0.3
114
Normal
-0.3
1016
Normal
-0.3
132
Normal
-0.3
466
Normal
-0.3
314
Normal
-0.3
571
Tumor
-0.3
424
Normal
-0.3
393
Tumor
-0.3
517
Tumor
-0.3
436
Normal
-0.3
388
Normal
-0.3
342
Normal
-0.3
737
Tumor
-0.3
344
Normal
-0.3
456
Normal
-0.3
357
Tumor
-0.4
124
Normal
-0.4
394
Normal
-0.4
877
Tumor
-0.4
515
Tumor
-0.4
618
Normal
-0.4
128
Normal
-0.4
777
Tumor
-0.4
628
Normal
-0.4
111
Normal
-0.5
636
Normal
-0.5
445
Tumor
-0.5
616
Normal
-0.5
818
Normal
-0.5
967
Tumor
-0.5
487
Tumor
-0.5
727
Tumor
-0.5
341
Tumor
-0.6
435
Tumor
-0.6
743
Tumor
-0.7
695
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
