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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
219.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
53.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
40.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
17.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
1.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.0
Number of samples
231
Samples
Sample
Description
TPM
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
0.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
367
Tumor
4.8
967
Tumor
4.1
387
Tumor
3.2
283
Tumor
3.2
257
Tumor
2.6
213
Tumor
2.5
218
Normal
2.5
426
Normal
2.4
188
Normal
2.3
312
Normal
2.3
217
Tumor
2.3
535
Tumor
2.3
635
Tumor
2.3
332
Normal
2.3
162
Normal
2.2
172
Normal
2.2
278
Normal
2.1
422
Normal
2.1
148
Normal
2.1
314
Normal
2.1
195
Tumor
2.1
171
Tumor
2.1
186
Normal
2.0
185
Tumor
2.0
298
Normal
2.0
277
Tumor
2.0
424
Normal
2.0
161
Tumor
2.0
331
Tumor
1.8
214
Normal
1.8
192
Normal
1.7
191
Tumor
1.7
665
Tumor
1.7
222
Normal
1.7
187
Tumor
1.7
423
Tumor
1.6
221
Tumor
1.6
573
Tumor
1.6
196
Normal
1.5
421
Tumor
1.5
414
Normal
1.5
433
Tumor
1.5
428
Normal
1.5
297
Tumor
1.4
147
Tumor
1.4
413
Tumor
1.4
425
Tumor
1.4
435
Tumor
1.4
313
Tumor
1.3
351
Tumor
1.3
537
Tumor
1.2
343
Tumor
1.2
357
Tumor
1.1
427
Tumor
1.1
564
Normal
0.9
344
Normal
0.9
311
Tumor
0.8
342
Normal
0.8
223
Tumor
0.8
114
Normal
0.8
568
Normal
0.7
353
Tumor
0.7
385
Tumor
0.7
574
Normal
0.7
126
Normal
0.7
127
Tumor
0.7
666
Normal
0.7
862
Normal
0.6
124
Normal
0.6
111
Normal
0.6
258
Normal
0.6
567
Tumor
0.6
557
Tumor
0.6
123
Tumor
0.5
572
Normal
0.5
113
Tumor
0.5
864
Normal
0.5
358
Normal
0.5
558
Normal
0.4
112
Tumor
0.4
863
Tumor
0.4
571
Tumor
0.3
953
Tumor
0.3
354
Normal
0.3
356
Normal
0.3
364
Normal
0.3
341
Tumor
0.3
125
Tumor
0.2
867
Tumor
0.2
416
Normal
0.2
868
Normal
0.2
447
Tumor
0.1
563
Tumor
0.1
388
Normal
0.1
328
Normal
0.1
327
Tumor
0.0
874
Normal
0.0
128
Normal
0.0
412
Normal
0.0
228
Normal
-0.1
966
Normal
-0.1
861
Tumor
-0.1
411
Tumor
-0.1
434
Normal
-0.1
648
Normal
-0.1
284
Normal
-0.1
664
Normal
-0.1
671
Tumor
-0.2
352
Normal
-0.2
965
Tumor
-0.2
232
Normal
-0.2
526
Normal
-0.2
968
Normal
-0.2
267
Tumor
-0.2
432
Normal
-0.2
672
Normal
-0.3
636
Normal
-0.3
976
Normal
-0.3
366
Normal
-0.3
662
Normal
-0.3
231
Tumor
-0.3
661
Tumor
-0.3
514
Normal
-0.4
866
Normal
-0.4
964
Normal
-0.4
445
Tumor
-0.4
415
Tumor
-0.4
446
Normal
-0.4
873
Tumor
-0.4
224
Normal
-0.4
365
Tumor
-0.4
436
Normal
-0.5
865
Tumor
-0.5
286
Normal
-0.5
361
Tumor
-0.5
958
Normal
-0.5
212
Normal
-0.5
517
Tumor
-0.5
448
Normal
-0.5
261
Tumor
-0.6
444
Normal
-0.6
534
Normal
-0.6
963
Tumor
-0.6
663
Tumor
-0.7
515
Tumor
-0.7
262
Normal
-0.7
384
Normal
-0.7
272
Normal
-0.7
355
Tumor
-0.7
616
Normal
-0.7
615
Tumor
-0.7
554
Normal
-0.8
538
Normal
-0.8
642
Normal
-0.8
363
Tumor
-0.8
386
Normal
-0.8
627
Tumor
-0.8
628
Normal
-0.8
957
Tumor
-0.8
1046
Normal
-0.8
618
Normal
-0.8
443
Tumor
-0.8
698
Normal
-0.8
1044
Normal
-0.8
431
Tumor
-0.9
513
Tumor
-0.9
518
Normal
-0.9
362
Normal
-0.9
975
Tumor
-0.9
227
Tumor
-1.0
394
Normal
-1.0
528
Normal
-1.0
546
Normal
-1.0
268
Normal
-1.0
647
Tumor
-1.0
1045
Tumor
-1.1
271
Tumor
-1.1
533
Tumor
-1.2
376
Normal
-1.2
375
Tumor
-1.2
523
Tumor
-1.2
392
Normal
-1.2
553
Tumor
-1.2
391
Tumor
-1.3
383
Tumor
-1.3
396
Normal
-1.3
393
Tumor
-1.3
536
Normal
-1.3
516
Normal
-1.3
211
Tumor
-1.3
524
Normal
-1.4
697
Tumor
-1.6
527
Tumor
-1.7
1043
Tumor
-1.7
525
Tumor
-1.7
545
Tumor
-1.8
395
Tumor
-1.9
617
Tumor
-2.0
641
Tumor
-2.7
285
Tumor
-2.7
944
Normal
-2.9
952
Normal
-3.0
956
Normal
-3.3
938
Normal
-3.4
943
Tumor
-3.9
951
Tumor
-4.0
955
Tumor
-4.2
937
Tumor
-4.2
471
Tumor
N/A
472
Normal
N/A
473
Tumor
N/A
474
Normal
N/A
477
Tumor
N/A
478
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
482
Normal
N/A
483
Tumor
N/A
484
Normal
N/A
487
Tumor
N/A
488
Normal
N/A
368
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
141
Tumor
N/A
142
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
722
Normal
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1042
Normal
N/A
1041
Tumor
N/A
851
Tumor
N/A
852
Normal
N/A
977
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
738
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
983
Tumor
N/A
742
Normal
N/A
984
Normal
N/A
743
Tumor
N/A
744
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
755
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
777
Tumor
N/A
778
Normal
N/A
785
Tumor
N/A
786
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
455
Tumor
N/A
456
Normal
N/A
461
Tumor
N/A
462
Normal
N/A
463
Tumor
N/A
464
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
