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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FDX2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
90.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
80.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
76.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
53.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
53.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
52.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
48.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
46.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
46.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
46.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
46.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
45.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
45.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
44.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
43.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
42.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
42.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
42.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
42.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
41.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
41.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
41.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
40.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
40.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
39.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
39.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
37.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
37.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
37.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
37.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
36.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
36.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
34.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
33.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
33.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
33.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
33.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
32.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
32.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
32.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
32.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
32.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
32.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
31.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
31.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
31.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
31.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
30.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
30.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
30.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
30.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
30.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
30.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
30.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
29.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
29.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
29.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
29.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
28.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
28.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
28.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
28.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
28.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
28.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
28.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
27.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
27.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
27.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
27.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
27.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
27.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
27.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
27.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
26.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
26.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
26.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
26.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
26.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
26.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
26.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
26.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
26.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
26.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
25.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
25.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
25.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
25.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
25.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
25.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
25.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
25.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
25.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
25.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
25.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
25.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
24.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
24.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
24.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
24.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
24.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
24.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
24.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
24.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
24.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
24.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
23.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
23.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
23.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
23.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
23.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
22.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
22.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
22.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
22.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
22.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
22.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
21.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
21.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
21.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
21.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
21.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
21.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
21.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
20.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
20.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
20.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
20.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
20.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
20.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
20.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
19.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
19.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
19.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
19.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
19.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
19.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
19.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
19.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
19.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
19.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
19.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
19.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
18.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
18.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
18.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
18.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
18.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
17.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
17.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
17.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
17.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
16.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
16.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
16.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
16.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
15.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
15.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
15.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
14.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
14.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
13.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
12.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.3
487
Tumor
1.1
741
Tumor
0.8
363
Tumor
0.8
513
Tumor
0.8
1041
Tumor
0.7
463
Tumor
0.7
443
Tumor
0.7
755
Tumor
0.7
627
Tumor
0.6
915
Tumor
0.6
785
Tumor
0.5
1015
Tumor
0.5
361
Tumor
0.5
867
Tumor
0.5
571
Tumor
0.5
925
Tumor
0.5
1013
Tumor
0.4
431
Tumor
0.4
557
Tumor
0.4
1022
Normal
0.4
267
Tumor
0.4
355
Tumor
0.4
1026
Normal
0.4
685
Tumor
0.4
777
Tumor
0.4
546
Normal
0.4
922
Normal
0.4
698
Normal
0.4
926
Normal
0.3
1016
Normal
0.3
978
Normal
0.3
858
Normal
0.3
981
Tumor
0.3
353
Tumor
0.3
877
Tumor
0.3
492
Normal
0.3
423
Tumor
0.3
452
Normal
0.3
1042
Normal
0.3
912
Normal
0.3
387
Tumor
0.3
135
Tumor
0.3
465
Tumor
0.3
356
Normal
0.3
214
Normal
0.3
488
Normal
0.3
367
Tumor
0.3
918
Normal
0.3
1014
Normal
0.3
1045
Tumor
0.3
944
Normal
0.3
911
Tumor
0.3
257
Tumor
0.3
963
Tumor
0.3
342
Normal
0.2
494
Normal
0.2
483
Tumor
0.2
528
Normal
0.2
1046
Normal
0.2
642
Normal
0.2
984
Normal
0.2
883
Tumor
0.2
916
Normal
0.2
1032
Normal
0.2
451
Tumor
0.2
534
Normal
0.2
722
Normal
0.2
852
Normal
0.2
222
Normal
0.2
312
Normal
0.2
436
Normal
0.2
868
Normal
0.2
568
Normal
0.2
628
Normal
0.2
351
Tumor
0.2
913
Tumor
0.2
196
Normal
0.2
232
Normal
0.2
354
Normal
0.2
874
Normal
0.2
128
Normal
0.2
818
Normal
0.2
445
Tumor
0.2
964
Normal
0.2
968
Normal
0.2
882
Normal
0.2
616
Normal
0.2
473
Tumor
0.2
472
Normal
0.2
358
Normal
0.2
262
Normal
0.2
462
Normal
0.2
261
Tumor
0.2
696
Normal
0.2
515
Tumor
0.2
1028
Normal
0.2
498
Normal
0.2
123
Tumor
0.2
328
Normal
0.2
861
Tumor
0.2
864
Normal
0.2
388
Normal
0.2
464
Normal
0.2
468
Normal
0.2
391
Tumor
0.2
884
Normal
0.2
636
Normal
0.2
125
Tumor
0.1
376
Normal
0.1
448
Normal
0.1
924
Normal
0.1
394
Normal
0.1
554
Normal
0.1
618
Normal
0.1
953
Tumor
0.1
482
Normal
0.1
474
Normal
0.1
756
Normal
0.1
746
Normal
0.1
362
Normal
0.1
426
Normal
0.1
716
Normal
0.1
1044
Normal
0.1
484
Normal
0.1
982
Normal
0.1
352
Normal
0.1
171
Tumor
0.1
714
Normal
0.1
478
Normal
0.1
977
Tumor
0.1
615
Tumor
0.1
954
Normal
0.1
344
Normal
0.1
873
Tumor
0.1
851
Tumor
0.1
686
Normal
0.1
813
Tumor
0.1
955
Tumor
0.1
424
Normal
0.1
815
Tumor
0.1
231
Tumor
0.1
368
Normal
0.1
516
Normal
0.1
866
Normal
0.1
284
Normal
0.1
518
Normal
0.1
217
Tumor
0.1
132
Normal
0.1
697
Tumor
0.1
366
Normal
0.1
228
Normal
0.1
526
Normal
0.1
952
Normal
0.1
383
Tumor
0.1
824
Normal
0.1
111
Normal
0.1
727
Tumor
0.1
395
Tumor
0.1
386
Normal
0.1
816
Normal
0.1
967
Tumor
0.1
641
Tumor
0.1
862
Normal
0.1
141
Tumor
0.1
435
Tumor
0.1
617
Tumor
0.1
341
Tumor
0.1
396
Normal
0.1
218
Normal
0.1
268
Normal
0.0
778
Normal
0.0
212
Normal
0.0
878
Normal
0.0
863
Tumor
0.0
258
Normal
0.0
172
Normal
0.0
574
Normal
0.0
411
Tumor
0.0
224
Normal
0.0
114
Normal
0.0
138
Normal
0.0
162
Normal
0.0
455
Tumor
0.0
142
Normal
0.0
491
Tumor
0.0
146
Normal
0.0
966
Normal
0.0
221
Tumor
0.0
298
Normal
0.0
466
Normal
0.0
375
Tumor
0.0
956
Normal
0.0
446
Normal
0.0
572
Normal
0.0
314
Normal
0.0
662
Normal
0.0
124
Normal
0.0
563
Tumor
0.0
412
Normal
0.0
272
Normal
0.0
195
Tumor
0.0
958
Normal
0.0
137
Tumor
0.0
186
Normal
0.0
145
Tumor
0.0
695
Tumor
0.0
738
Normal
0.0
558
Normal
0.0
525
Tumor
0.0
538
Normal
0.0
414
Normal
0.0
286
Normal
0.0
938
Normal
0.0
278
Normal
0.0
416
Normal
0.0
573
Tumor
0.0
136
Normal
0.0
663
Tumor
0.0
728
Normal
0.0
786
Normal
0.0
422
Normal
-0.1
192
Normal
-0.1
126
Normal
-0.1
413
Tumor
-0.1
285
Tumor
-0.1
976
Normal
-0.1
524
Normal
-0.1
713
Tumor
-0.1
227
Tumor
-0.1
392
Normal
-0.1
223
Tumor
-0.1
737
Tumor
-0.1
536
Normal
-0.1
517
Tumor
-0.1
1021
Tumor
-0.1
527
Tumor
-0.1
648
Normal
-0.1
456
Normal
-0.1
914
Normal
-0.1
332
Normal
-0.1
564
Normal
-0.1
188
Normal
-0.1
364
Normal
-0.1
415
Tumor
-0.1
112
Tumor
-0.1
664
Normal
-0.1
365
Tumor
-0.1
493
Tumor
-0.1
461
Tumor
-0.1
1025
Tumor
-0.1
481
Tumor
-0.1
937
Tumor
-0.1
113
Tumor
-0.1
148
Normal
-0.1
428
Normal
-0.1
434
Normal
-0.1
1043
Tumor
-0.1
191
Tumor
-0.2
271
Tumor
-0.2
857
Tumor
-0.2
425
Tumor
-0.2
444
Normal
-0.2
327
Tumor
-0.2
724
Normal
-0.2
553
Tumor
-0.2
297
Tumor
-0.2
823
Tumor
-0.2
921
Tumor
-0.2
161
Tumor
-0.2
535
Tumor
-0.2
865
Tumor
-0.2
467
Tumor
-0.2
672
Normal
-0.2
432
Normal
-0.2
283
Tumor
-0.2
313
Tumor
-0.2
744
Normal
-0.2
127
Tumor
-0.2
514
Normal
-0.2
567
Tumor
-0.2
477
Tumor
-0.2
471
Tumor
-0.2
427
Tumor
-0.3
715
Tumor
-0.3
721
Tumor
-0.3
923
Tumor
-0.3
131
Tumor
-0.3
745
Tumor
-0.3
635
Tumor
-0.3
147
Tumor
-0.3
523
Tumor
-0.3
814
Normal
-0.3
357
Tumor
-0.3
213
Tumor
-0.3
665
Tumor
-0.3
943
Tumor
-0.3
537
Tumor
-0.3
666
Normal
-0.3
384
Normal
-0.3
965
Tumor
-0.3
671
Tumor
-0.3
742
Normal
-0.3
393
Tumor
-0.4
881
Tumor
-0.4
647
Tumor
-0.4
433
Tumor
-0.4
277
Tumor
-0.4
723
Tumor
-0.4
385
Tumor
-0.4
421
Tumor
-0.4
187
Tumor
-0.4
917
Tumor
-0.4
185
Tumor
-0.4
497
Tumor
-0.4
983
Tumor
-0.4
211
Tumor
-0.4
343
Tumor
-0.4
447
Tumor
-0.5
311
Tumor
-0.5
661
Tumor
-0.5
1031
Tumor
-0.5
957
Tumor
-0.5
951
Tumor
-0.6
545
Tumor
-0.6
533
Tumor
-0.6
331
Tumor
-0.6
817
Tumor
-0.6
975
Tumor
-0.6
743
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
