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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEC22B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
56.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
39.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
39.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
29.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
28.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
26.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
25.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
25.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
25.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
24.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
24.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
24.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
22.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
22.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
22.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
22.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
21.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
21.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
21.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
20.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
20.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
20.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
19.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
19.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
19.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
19.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
13.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEC22B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.5
Number of samples
231
Samples
Sample
Description
TPM
DO45237
0 years, male, NA, stage:2, alive, 900 days
82.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
80.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
75.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
75.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
75.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
73.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
69.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
66.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
61.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
61.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
61.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
59.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
59.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
58.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
57.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
56.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
56.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
56.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
55.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
55.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
54.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
54.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
52.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
52.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
51.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
51.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
51.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
51.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
50.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
50.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
50.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
50.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
50.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
50.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
49.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
49.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
49.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
49.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
49.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
48.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
48.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
48.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
48.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
48.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
47.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
47.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
47.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
47.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
47.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
47.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
47.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
46.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
46.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
46.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
46.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
46.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
46.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
46.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
45.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
45.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
45.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
45.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
45.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
45.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
44.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
44.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
44.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
44.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
44.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
43.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
43.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
43.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
43.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
43.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
43.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
43.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
43.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
42.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
42.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
42.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
42.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
42.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
42.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
41.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
41.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
41.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
41.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
40.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
40.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
40.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
40.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
40.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
39.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
39.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
39.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
39.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
39.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
38.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
38.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
38.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
38.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
38.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
38.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
37.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
37.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
37.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
37.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
37.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
37.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
37.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
37.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
36.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
36.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
36.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
36.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
36.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
36.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
35.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
35.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
35.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
35.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
35.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
35.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
35.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
35.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
34.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
34.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
34.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
34.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
34.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
34.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
34.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
34.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
34.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
33.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
33.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
33.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
33.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
32.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
32.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
32.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
32.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
32.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
32.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
32.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
32.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
31.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
31.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
31.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
31.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
31.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
31.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
31.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
31.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
31.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
30.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
30.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
30.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
30.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
30.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
30.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
30.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
30.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
30.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
30.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
30.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
29.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
29.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
29.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
28.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
28.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
28.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
28.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
28.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
28.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
28.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
28.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
28.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
27.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
27.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
27.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
27.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
27.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
27.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
26.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
26.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
26.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
26.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
26.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
26.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
26.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
26.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
25.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
25.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
25.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
25.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
24.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
24.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
24.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
23.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
23.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
23.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
23.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
22.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
22.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
22.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
21.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
21.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
21.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
21.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
18.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
16.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.1
745
Tumor
0.9
743
Tumor
0.9
571
Tumor
0.6
147
Tumor
0.5
685
Tumor
0.5
1043
Tumor
0.4
857
Tumor
0.4
537
Tumor
0.4
741
Tumor
0.4
695
Tumor
0.4
921
Tumor
0.4
727
Tumor
0.4
221
Tumor
0.4
327
Tumor
0.4
616
Normal
0.4
636
Normal
0.4
868
Normal
0.4
816
Normal
0.4
191
Tumor
0.4
257
Tumor
0.4
914
Normal
0.4
514
Normal
0.3
261
Tumor
0.3
481
Tumor
0.3
922
Normal
0.3
466
Normal
0.3
1044
Normal
0.3
491
Tumor
0.3
1032
Normal
0.3
212
Normal
0.3
746
Normal
0.3
738
Normal
0.3
615
Tumor
0.3
648
Normal
0.3
978
Normal
0.3
111
Normal
0.3
1014
Normal
0.3
878
Normal
0.3
938
Normal
0.3
356
Normal
0.3
271
Tumor
0.3
944
Normal
0.3
232
Normal
0.3
148
Normal
0.3
817
Tumor
0.3
526
Normal
0.3
744
Normal
0.3
698
Normal
0.3
393
Tumor
0.2
984
Normal
0.2
852
Normal
0.2
618
Normal
0.2
862
Normal
0.2
448
Normal
0.2
128
Normal
0.2
724
Normal
0.2
362
Normal
0.2
866
Normal
0.2
714
Normal
0.2
145
Tumor
0.2
982
Normal
0.2
392
Normal
0.2
488
Normal
0.2
1028
Normal
0.2
1026
Normal
0.2
963
Tumor
0.2
534
Normal
0.2
851
Tumor
0.2
1016
Normal
0.2
412
Normal
0.2
468
Normal
0.2
722
Normal
0.2
525
Tumor
0.2
916
Normal
0.2
882
Normal
0.2
662
Normal
0.2
436
Normal
0.2
955
Tumor
0.2
723
Tumor
0.2
915
Tumor
0.2
472
Normal
0.2
956
Normal
0.2
298
Normal
0.2
641
Tumor
0.2
196
Normal
0.2
434
Normal
0.2
278
Normal
0.2
628
Normal
0.2
864
Normal
0.2
332
Normal
0.2
1042
Normal
0.2
958
Normal
0.2
527
Tumor
0.2
188
Normal
0.2
742
Normal
0.2
137
Tumor
0.2
462
Normal
0.2
483
Tumor
0.2
728
Normal
0.2
328
Normal
0.2
642
Normal
0.2
342
Normal
0.2
572
Normal
0.2
968
Normal
0.2
664
Normal
0.2
1046
Normal
0.2
228
Normal
0.2
786
Normal
0.2
926
Normal
0.2
518
Normal
0.2
227
Tumor
0.2
1015
Tumor
0.2
824
Normal
0.2
943
Tumor
0.2
484
Normal
0.2
451
Tumor
0.2
874
Normal
0.2
195
Tumor
0.2
952
Normal
0.2
492
Normal
0.2
354
Normal
0.2
132
Normal
0.2
924
Normal
0.2
126
Normal
0.2
452
Normal
0.2
1022
Normal
0.2
262
Normal
0.2
214
Normal
0.2
131
Tumor
0.2
478
Normal
0.1
918
Normal
0.1
976
Normal
0.1
546
Normal
0.1
716
Normal
0.1
284
Normal
0.1
314
Normal
0.1
696
Normal
0.1
686
Normal
0.1
223
Tumor
0.1
312
Normal
0.1
358
Normal
0.1
721
Tumor
0.1
672
Normal
0.1
388
Normal
0.1
142
Normal
0.1
368
Normal
0.1
568
Normal
0.1
957
Tumor
0.1
697
Tumor
0.1
564
Normal
0.1
283
Tumor
0.1
125
Tumor
0.1
823
Tumor
0.1
376
Normal
0.1
258
Normal
0.1
494
Normal
0.1
366
Normal
0.1
364
Normal
0.1
124
Normal
0.1
138
Normal
0.1
1013
Tumor
0.1
1021
Tumor
0.1
911
Tumor
0.1
713
Tumor
0.1
113
Tumor
0.1
218
Normal
0.1
666
Normal
0.1
114
Normal
0.1
964
Normal
0.1
528
Normal
0.1
977
Tumor
0.1
524
Normal
0.1
863
Tumor
0.1
756
Normal
0.1
352
Normal
0.1
344
Normal
0.1
446
Normal
0.1
474
Normal
0.1
487
Tumor
0.1
818
Normal
0.1
426
Normal
0.1
554
Normal
0.1
482
Normal
0.1
353
Tumor
0.1
877
Tumor
0.1
981
Tumor
0.1
375
Tumor
0.1
558
Normal
0.1
136
Normal
0.1
414
Normal
0.1
1045
Tumor
0.1
456
Normal
0.1
954
Normal
0.1
286
Normal
0.1
443
Tumor
0.1
171
Tumor
0.0
416
Normal
0.0
966
Normal
0.0
186
Normal
0.0
172
Normal
0.0
627
Tumor
0.0
222
Normal
0.0
396
Normal
0.0
464
Normal
0.0
498
Normal
0.0
778
Normal
0.0
415
Tumor
0.0
533
Tumor
0.0
112
Tumor
0.0
553
Tumor
0.0
224
Normal
0.0
755
Tumor
0.0
567
Tumor
0.0
858
Normal
0.0
272
Normal
0.0
861
Tumor
0.0
431
Tumor
0.0
365
Tumor
0.0
917
Tumor
0.0
617
Tumor
0.0
647
Tumor
0.0
135
Tumor
0.0
665
Tumor
0.0
162
Normal
0.0
471
Tumor
0.0
146
Normal
0.0
912
Normal
0.0
536
Normal
0.0
123
Tumor
0.0
422
Normal
0.0
884
Normal
0.0
1025
Tumor
0.0
383
Tumor
0.0
574
Normal
0.0
192
Normal
0.0
517
Tumor
0.0
211
Tumor
0.0
975
Tumor
-0.1
467
Tumor
-0.1
268
Normal
-0.1
516
Normal
-0.1
663
Tumor
-0.1
161
Tumor
-0.1
965
Tumor
-0.1
444
Normal
-0.1
386
Normal
-0.1
394
Normal
-0.1
435
Tumor
-0.1
777
Tumor
-0.1
513
Tumor
-0.1
913
Tumor
-0.1
425
Tumor
-0.1
127
Tumor
-0.1
411
Tumor
-0.1
341
Tumor
-0.1
477
Tumor
-0.1
231
Tumor
-0.1
865
Tumor
-0.1
187
Tumor
-0.1
217
Tumor
-0.1
424
Normal
-0.1
515
Tumor
-0.1
493
Tumor
-0.1
355
Tumor
-0.1
937
Tumor
-0.1
384
Normal
-0.1
311
Tumor
-0.1
297
Tumor
-0.1
867
Tumor
-0.1
428
Normal
-0.1
538
Normal
-0.1
873
Tumor
-0.2
357
Tumor
-0.2
427
Tumor
-0.2
432
Normal
-0.2
737
Tumor
-0.2
465
Tumor
-0.2
497
Tumor
-0.2
455
Tumor
-0.2
461
Tumor
-0.2
923
Tumor
-0.2
573
Tumor
-0.2
953
Tumor
-0.2
785
Tumor
-0.2
421
Tumor
-0.2
557
Tumor
-0.2
313
Tumor
-0.2
433
Tumor
-0.2
1041
Tumor
-0.2
925
Tumor
-0.2
343
Tumor
-0.2
447
Tumor
-0.2
715
Tumor
-0.2
463
Tumor
-0.2
213
Tumor
-0.3
185
Tumor
-0.3
535
Tumor
-0.3
967
Tumor
-0.3
395
Tumor
-0.3
387
Tumor
-0.3
883
Tumor
-0.3
814
Normal
-0.3
361
Tumor
-0.3
951
Tumor
-0.3
813
Tumor
-0.4
351
Tumor
-0.4
523
Tumor
-0.4
363
Tumor
-0.4
391
Tumor
-0.4
423
Tumor
-0.4
563
Tumor
-0.4
881
Tumor
-0.4
413
Tumor
-0.4
141
Tumor
-0.4
267
Tumor
-0.5
445
Tumor
-0.5
367
Tumor
-0.5
545
Tumor
-0.5
1031
Tumor
-0.5
285
Tumor
-0.5
661
Tumor
-0.6
385
Tumor
-0.6
815
Tumor
-0.6
277
Tumor
-0.6
983
Tumor
-0.6
635
Tumor
-0.7
331
Tumor
-0.7
473
Tumor
-0.7
671
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.