We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF115 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
6.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
5.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
5.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
4.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
4.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF115 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.6
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
60.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
43.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
41.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
38.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
35.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
33.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
32.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
30.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
29.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
29.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
29.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
28.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
28.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
27.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
23.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
23.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
23.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
22.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
21.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
21.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
20.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
20.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
20.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
19.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
18.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
18.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
16.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
16.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
913
Tumor
2.1
525
Tumor
2.0
427
Tumor
1.9
957
Tumor
1.8
533
Tumor
1.6
267
Tumor
1.5
285
Tumor
1.4
635
Tumor
1.4
161
Tumor
1.3
814
Normal
1.3
1021
Tumor
1.3
517
Tumor
1.2
756
Normal
1.1
328
Normal
1.1
777
Tumor
1.1
925
Tumor
1.1
786
Normal
1.0
283
Tumor
0.9
483
Tumor
0.9
228
Normal
0.9
873
Tumor
0.9
545
Tumor
0.8
515
Tumor
0.8
383
Tumor
0.8
817
Tumor
0.8
1027
Tumor
0.8
387
Tumor
0.8
823
Tumor
0.8
953
Tumor
0.8
785
Tumor
0.7
1041
Tumor
0.7
313
Tumor
0.7
527
Tumor
0.7
666
Normal
0.7
724
Normal
0.7
224
Normal
0.6
491
Tumor
0.6
375
Tumor
0.6
357
Tumor
0.6
487
Tumor
0.6
911
Tumor
0.6
662
Normal
0.6
857
Tumor
0.6
393
Tumor
0.5
813
Tumor
0.5
425
Tumor
0.5
498
Normal
0.5
364
Normal
0.5
286
Normal
0.5
923
Tumor
0.5
745
Tumor
0.5
524
Normal
0.5
355
Tumor
0.5
975
Tumor
0.4
921
Tumor
0.4
516
Normal
0.4
513
Tumor
0.4
641
Tumor
0.4
537
Tumor
0.4
951
Tumor
0.4
211
Tumor
0.4
271
Tumor
0.4
881
Tumor
0.4
778
Normal
0.4
526
Normal
0.4
672
Normal
0.4
493
Tumor
0.4
451
Tumor
0.4
915
Tumor
0.4
567
Tumor
0.4
351
Tumor
0.3
257
Tumor
0.3
573
Tumor
0.3
943
Tumor
0.3
865
Tumor
0.3
883
Tumor
0.3
297
Tumor
0.3
627
Tumor
0.3
523
Tumor
0.3
741
Tumor
0.3
497
Tumor
0.3
615
Tumor
0.3
664
Normal
0.3
861
Tumor
0.3
661
Tumor
0.3
327
Tumor
0.3
428
Normal
0.2
367
Tumor
0.2
863
Tumor
0.2
713
Tumor
0.2
415
Tumor
0.2
917
Tumor
0.2
385
Tumor
0.2
356
Normal
0.2
361
Tumor
0.2
553
Tumor
0.2
665
Tumor
0.2
965
Tumor
0.2
1025
Tumor
0.2
557
Tumor
0.1
368
Normal
0.1
147
Tumor
0.1
331
Tumor
0.1
365
Tumor
0.1
277
Tumor
0.1
311
Tumor
0.1
721
Tumor
0.1
395
Tumor
0.1
663
Tumor
0.1
916
Normal
0.1
715
Tumor
0.1
455
Tumor
0.1
572
Normal
0.0
268
Normal
0.0
1042
Normal
0.0
671
Tumor
0.0
617
Tumor
0.0
963
Tumor
0.0
272
Normal
0.0
926
Normal
0.0
416
Normal
0.0
284
Normal
0.0
1028
Normal
0.0
538
Normal
0.0
212
Normal
0.0
568
Normal
0.0
877
Tumor
0.0
366
Normal
0.0
867
Tumor
0.0
571
Tumor
-0.1
648
Normal
-0.1
411
Tumor
-0.1
231
Tumor
-0.1
492
Normal
-0.1
376
Normal
-0.1
874
Normal
-0.1
343
Tumor
-0.1
937
Tumor
-0.1
574
Normal
-0.1
918
Normal
-0.1
647
Tumor
-0.1
384
Normal
-0.2
922
Normal
-0.2
563
Tumor
-0.2
1031
Tumor
-0.2
362
Normal
-0.2
924
Normal
-0.2
412
Normal
-0.2
956
Normal
-0.2
564
Normal
-0.2
258
Normal
-0.2
494
Normal
-0.2
914
Normal
-0.2
423
Tumor
-0.2
262
Normal
-0.2
722
Normal
-0.2
227
Tumor
-0.3
312
Normal
-0.3
1026
Normal
-0.3
422
Normal
-0.3
463
Tumor
-0.3
866
Normal
-0.3
514
Normal
-0.3
171
Tumor
-0.3
955
Tumor
-0.3
465
Tumor
-0.3
424
Normal
-0.3
696
Normal
-0.3
421
Tumor
-0.4
728
Normal
-0.4
636
Normal
-0.4
353
Tumor
-0.4
558
Normal
-0.4
261
Tumor
-0.4
413
Tumor
-0.4
944
Normal
-0.4
958
Normal
-0.4
534
Normal
-0.4
723
Tumor
-0.4
628
Normal
-0.4
554
Normal
-0.4
727
Tumor
-0.4
518
Normal
-0.4
852
Normal
-0.4
966
Normal
-0.5
642
Normal
-0.5
952
Normal
-0.5
864
Normal
-0.5
878
Normal
-0.5
737
Tumor
-0.5
824
Normal
-0.5
954
Normal
-0.5
278
Normal
-0.5
414
Normal
-0.5
755
Tumor
-0.5
815
Tumor
-0.5
546
Normal
-0.5
341
Tumor
-0.5
484
Normal
-0.5
464
Normal
-0.5
714
Normal
-0.6
528
Normal
-0.6
488
Normal
-0.6
851
Tumor
-0.6
467
Tumor
-0.6
868
Normal
-0.6
396
Normal
-0.6
187
Tumor
-0.6
388
Normal
-0.6
968
Normal
-0.6
816
Normal
-0.6
186
Normal
-0.6
456
Normal
-0.7
742
Normal
-0.7
386
Normal
-0.7
188
Normal
-0.7
618
Normal
-0.7
232
Normal
-0.7
938
Normal
-0.7
695
Tumor
-0.7
738
Normal
-0.7
976
Normal
-0.8
391
Tumor
-0.8
686
Normal
-0.8
352
Normal
-0.8
185
Tumor
-0.8
392
Normal
-0.8
223
Tumor
-0.8
616
Normal
-0.8
332
Normal
-0.8
884
Normal
-0.8
716
Normal
-0.8
466
Normal
-0.8
743
Tumor
-0.8
818
Normal
-0.9
298
Normal
-0.9
1022
Normal
-0.9
862
Normal
-0.9
358
Normal
-0.9
744
Normal
-0.9
468
Normal
-0.9
746
Normal
-1.0
858
Normal
-1.0
344
Normal
-1.0
314
Normal
-1.0
162
Normal
-1.0
882
Normal
-1.0
426
Normal
-1.1
148
Normal
-1.1
1032
Normal
-1.1
354
Normal
-1.1
363
Tumor
-1.2
685
Tumor
-1.2
452
Normal
-1.2
964
Normal
-1.2
912
Normal
-1.2
394
Normal
-1.3
342
Normal
-1.3
172
Normal
-1.4
967
Tumor
-1.6
471
Tumor
N/A
472
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
474
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
477
Tumor
N/A
478
Normal
N/A
481
Tumor
N/A
482
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
141
Tumor
N/A
142
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
1044
Normal
N/A
1043
Tumor
N/A
977
Tumor
N/A
978
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
1045
Tumor
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
535
Tumor
N/A
536
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
433
Tumor
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
447
Tumor
N/A
448
Normal
N/A
213
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
222
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
