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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
16.3
nTPM
HPA Brain:
65.9
nTPM
GTEx:
16.3
nTPM
FANTOM5:
47.4
Scaled Tags Per Million
Pig:
43.7
nTPM
Mouse:
30.8
nTPM
Allen mouse:
6.3
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
65.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 46.9
2586
Male, age 75, left hemisphere
79.4
1827
Male, age 72, unknown
58.5
2828
Female, age 72, unknown
51.0
1870
Female, age 42, unknown
46.5
1833
Male, age 53, unknown
45.0
2411
Female, age 72, unknown
41.9
1830
Male, age 51, unknown
37.8
2219
Male, age 76, both hemispheres
37.5
2666
Male, age 74, left hemisphere
36.0
2019
Male, age 18, unknown
35.4
Dorsal raphe nucleus nTPM: 60.0
2298
Female, age 72, unknown
68.1
2047
Male, age 72, unknown
64.8
2016
Female, age 72, unknown
64.6
1828
Male, age 53, unknown
59.9
2750
Male, age 76, both hemispheres
42.5
Inferior colliculus nTPM: 65.9
2097
Female, age 72, unknown
72.5
1848
Female, age 42, unknown
69.3
1890
Male, age 53, unknown
62.0
2849
Male, age 72, unknown
59.7
Median raphe nucleus nTPM: 40.9
2220
Male, age 76, midline
40.9
Periaquaductal grey, anterior nTPM: 64.7
1795
Male, age 51, unknown
69.2
1947
Male, age 18, unknown
64.1
2502
Female, age 75, unknown
60.9
Periaquaductal grey, dorsal nTPM: 56.7
1840
Male, age 53, unknown
71.7
2464
Female, age 72, unknown
60.0
2850
Male, age 76, both hemispheres
58.4
1831
Male, age 72, unknown
36.5
Periaquaductal grey, lateral nTPM: 61.9
2053
Male, age 18, unknown
75.1
2140
Male, age 76, both hemispheres
71.4
2272
Male, age 74, both hemispheres
39.3
Pretectal area nTPM: 49.0
2224
Female, age 72, unknown
65.4
1944
Female, age 72, unknown
62.5
1817
Female, age 42, unknown
53.7
2667
Female, age 75, unknown
52.4
2825
Male, age 18, unknown
51.7
1816
Male, age 51, unknown
50.4
2273
Male, age 74, both hemispheres
44.3
2316
Male, age 76, right hemisphere
43.9
2007
Male, age 72, unknown
42.7
1815
Male, age 53, unknown
37.7
2407
Male, age 75, both hemispheres
34.1
Red nucleus nTPM: 49.1
1821
Female, age 72, unknown
59.4
1954
Female, age 42, unknown
58.0
2227
Male, age 72, unknown
56.9
2769
Male, age 72, unknown
56.3
1904
Male, age 53, unknown
55.0
2503
Female, age 72, unknown
54.9
2725
Female, age 75, unknown
53.6
2823
Male, age 76, right hemisphere
50.1
1865
Male, age 51, unknown
46.3
2588
Male, age 74, left hemisphere
37.0
2584
Male, age 75, left hemisphere
31.4
2785
Male, age 18, unknown
30.7
Substantia nigra nTPM: 46.8
1916
Female, age 42, unknown
58.8
2590
Female, age 75, unknown
50.7
2699
Male, age 18, unknown
49.6
1889
Female, age 72, unknown
49.2
2409
Female, age 72, unknown
49.1
2583
Male, age 75, right hemisphere
47.7
1851
Male, age 51, unknown
45.9
2241
Male, age 72, unknown
45.6
2665
Male, age 74, both hemispheres
36.6
1941
Male, age 53, unknown
35.1
Superior colliculus nTPM: 46.2
2261
Male, age 18, unknown
63.1
2087
Female, age 72, unknown
55.2
1796
Male, age 53, unknown
54.0
2664
Male, age 75, both hemispheres
47.3
1839
Male, age 51, unknown
46.0
1995
Male, age 72, unknown
44.1
1895
Male, age 76, right hemisphere
43.0
1913
Female, age 42, unknown
38.5
2668
Female, age 75, unknown
36.3
2587
Male, age 74, left hemisphere
35.1
Ventral tegmental area nTPM: 43.1
2410
Female, age 72, unknown
49.2
1942
Male, age 51, unknown
47.5
1915
Female, age 42, unknown
46.3
2021
Male, age 53, unknown
42.9
2218
Male, age 76, both hemispheres
41.7
2223
Female, age 72, unknown
31.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
16.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 16.3
Samples: 139
Max nTPM: 99.3
Min nTPM: 1.2
Std nTPM: 14.3
Median nTPM: 12.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
99.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
76.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
67.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
59.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
53.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
48.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
47.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
40.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
39.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
35.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
34.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
32.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
31.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
30.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
30.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
29.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
29.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
28.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
27.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
27.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
26.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
24.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
24.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
23.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
21.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
21.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
21.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
21.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
20.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
20.8
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
20.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
20.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
20.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
20.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
20.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
19.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
19.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
19.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
18.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
18.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
18.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
18.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
18.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
17.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
17.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
16.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
16.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
16.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
16.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
15.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
15.8
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
15.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
15.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
15.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
14.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
14.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
14.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
14.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
14.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
14.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
13.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
13.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
13.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
13.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
13.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
13.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
13.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
13.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
12.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
12.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
12.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
12.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
12.5
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
12.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
12.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
11.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
11.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
11.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
11.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
11.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
10.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
10.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
10.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
10.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
10.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
10.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
9.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
9.8
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
9.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
9.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
9.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
9.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
9.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
8.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
8.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
8.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
8.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
8.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
8.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
8.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
8.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
7.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
7.8
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
7.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
7.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
7.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
7.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
7.2
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
6.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
6.6
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
6.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
6.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
6.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
6.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
6.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
6.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
6.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
5.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
5.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
5.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
5.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
5.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
5.3
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
4.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
4.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
4.4
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
4.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
4.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
3.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
3.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
3.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
3.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
3.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
3.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
3.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
3.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
2.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1.9
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
1.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
30.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 30.8
Samples: 4
Max nTPM: 31.3
Min nTPM: 30.4
Sample A
Male
30.6
Sample B
Male
30.4
Sample C
Female
31.3
Sample D
Female
30.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.