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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
11.3
nTPM
HPA Brain:
54.1
nTPM
GTEx:
11.3
nTPM
FANTOM5:
71.9
Scaled Tags Per Million
Pig:
33.7
nTPM
Mouse:
26.6
nTPM
Allen mouse:
11.4
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA077546
Glial cells
Not detected
Neuronal cells
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
54.1
Sample id
Sample description
nTPM
Hippocampus nTPM: 40.9
1911
Female, age 85, right hemisphere
53.8
2148
Female, age 91, left hemisphere
49.1
2529
Female, age 94, left hemisphere
40.7
1855
Male, age 76, left hemisphere
40.6
1898
Male, age 80, left hemisphere
37.5
2621
Female, age 67, right hemisphere
23.6
Dentate gyrus nTPM: 41.0
2246
Female, age 85, both hemispheres
68.2
2528
Male, age 74, both hemispheres
50.2
1927
Female, age 91, both hemispheres
43.8
2531
Female, age 67, both hemispheres
35.5
2010
Male, age 76, both hemispheres
26.6
2530
Female, age 94, left hemisphere
21.7
Entorhinal gyrus nTPM: 23.7
2117
Female, age 91, right hemisphere
40.4
1938
Female, age 85, left hemisphere
26.2
2764
Male, age 80, right hemisphere
19.3
1787
Male, age 76, left hemisphere
18.8
2613
Female, age 94, left hemisphere
18.7
2686
Male, age 75, right hemisphere
18.5
Hippocampus, CA1 nTPM: 54.1
2045
Male, age 76, both hemispheres
81.9
1873
Female, age 85, both hemispheres
59.2
2527
Male, age 74, both hemispheres
55.3
2082
Female, age 91, right hemisphere
41.4
2749
Male, age 80, left hemisphere
32.5
Hippocampus, CA2 nTPM: 33.0
2249
Male, age 74, both hemispheres
40.8
2113
Female, age 91, right hemisphere
40.2
1892
Male, age 76, both hemispheres
39.7
1940
Female, age 85, left hemisphere
33.0
2437
Female, age 94, left hemisphere
25.0
1963
Male, age 80, left hemisphere
19.3
Hippocampus, CA3 nTPM: 47.1
1891
Female, age 85, both hemispheres
59.6
2137
Male, age 80, left hemisphere
52.8
1867
Male, age 76, both hemispheres
52.3
2620
Female, age 94, left hemisphere
48.5
2436
Male, age 74, both hemispheres
41.4
2861
Female, age 67, both hemispheres
27.9
Parahippocampal cortex nTPM: 28.3
2692
Male, age 74, both hemispheres
37.4
2250
Female, age 67, right hemisphere
33.2
1933
Female, age 85, both hemispheres
31.8
2622
Female, age 67, right hemisphere
30.5
2245
Female, age 91, both hemispheres
29.7
2018
Male, age 76, both hemispheres
28.5
1990
Female, age 91, right hemisphere
27.4
2693
Female, age 94, both hemispheres
21.8
1850
Male, age 80, both hemispheres
21.4
2532
Female, age 72, left hemisphere
21.0
Perirhinal gyrus nTPM: 23.5
1847
Female, age 91, left hemisphere
29.3
2521
Female, age 94, right hemisphere
25.5
1794
Male, age 80, right hemisphere
24.6
1841
Female, age 85, right hemisphere
22.8
2848
Male, age 76, right hemisphere
15.6
Subiculum nTPM: 38.6
2729
Female, age 91, right hemisphere
50.6
2619
Male, age 74, both hemispheres
46.1
1901
Male, age 80, both hemispheres
41.0
1977
Female, age 85, both hemispheres
32.5
2438
Female, age 94, left hemisphere
30.9
2042
Male, age 76, both hemispheres
30.5
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
11.3
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 11.3
Samples: 197
Max nTPM: 43.7
Min nTPM: 1.3
Std nTPM: 7.3
Median nTPM: 9.5
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
43.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
41.6
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
37.2
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
36.5
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
28.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
28.5
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
27.2
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
26.1
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
24.8
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
24.5
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
24.2
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
24.0
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
23.4
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
23.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
22.3
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
22.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
21.9
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
21.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
21.7
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
20.6
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
20.6
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
20.5
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
20.4
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
20.3
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
20.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
20.0
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
19.8
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
19.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
18.9
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
18.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
18.7
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
18.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
18.5
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
17.7
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
17.5
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
17.5
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
17.4
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
17.3
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
17.2
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
17.1
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
16.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
16.7
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
16.6
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
16.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
16.4
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
16.3
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
16.1
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
15.9
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
15.2
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
15.1
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
14.9
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
14.8
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
14.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
14.3
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
13.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
13.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
13.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
13.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
12.9
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
12.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
12.6
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
12.5
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
12.3
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
12.2
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
12.2
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
12.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
12.0
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
11.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
11.7
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
11.7
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
11.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
11.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
11.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
11.5
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
11.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
11.2
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
11.1
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
11.1
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
10.9
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
10.8
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
10.8
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
10.6
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
10.5
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
10.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
10.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
10.3
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
10.3
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
10.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
10.2
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
10.1
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
10.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
10.1
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
9.9
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
9.8
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
9.8
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
9.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
9.6
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
9.6
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
9.5
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
9.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
9.2
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
9.1
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
9.0
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
9.0
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
9.0
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
8.9
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
8.7
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
8.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
8.6
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
8.4
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
8.3
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
8.3
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
8.3
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
8.2
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
8.2
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
8.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
8.1
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
8.0
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
8.0
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
7.9
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
7.8
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
7.8
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
7.8
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
7.7
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
7.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
7.5
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
7.4
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
7.4
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
7.3
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
7.3
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
7.2
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
7.2
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
7.2
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
7.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
7.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
6.9
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
6.8
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
6.8
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
6.8
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
6.7
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
6.4
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
6.4
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
6.4
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
6.3
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
6.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
6.2
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
6.2
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
6.1
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
6.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
6.0
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
5.9
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
5.9
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
5.9
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
5.9
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
5.8
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
5.7
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
5.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
5.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
5.3
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
5.2
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
5.2
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
5.2
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
5.1
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
5.0
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
4.9
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
4.7
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
4.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
4.6
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
4.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
4.3
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
4.3
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
4.2
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
4.2
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
4.2
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
4.0
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
4.0
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
3.9
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
3.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
3.8
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
3.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
3.7
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
3.6
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
3.6
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
3.3
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
3.2
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
3.1
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
3.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
2.9
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
2.7
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
2.6
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
2.5
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
2.3
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
2.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
2.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
2.1
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
1.4
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
1.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
26.6
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 22.3
Samples: 4
Max nTPM: 25.1
Min nTPM: 17.7
Sample A
Male
22.2
Sample B
Male
17.7
Sample C
Female
24.2
Sample D
Female
25.1
Hippocampal formation nTPM: 26.6
Samples: 4
Max nTPM: 30.8
Min nTPM: 23.9
Sample A
Male
25.7
Sample B
Male
30.8
Sample C
Female
23.9
Sample D
Female
26.0
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.