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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CORO7 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
25.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
23.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
17.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
2.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
2.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
2.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CORO7 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.0
Number of samples
231
Samples
Sample
Description
TPM
DO45277
0 years, male, NA, stage:3, alive, 600 days
26.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
25.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
9.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
5.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
3.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
1.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
724
Normal
0.8
925
Tumor
0.7
851
Tumor
0.6
231
Tumor
0.6
1013
Tumor
0.5
211
Tumor
0.5
411
Tumor
0.4
434
Normal
0.4
665
Tumor
0.4
951
Tumor
0.4
535
Tumor
0.4
311
Tumor
0.4
343
Tumor
0.4
262
Normal
0.3
661
Tumor
0.3
524
Normal
0.3
367
Tumor
0.3
171
Tumor
0.3
391
Tumor
0.3
191
Tumor
0.3
395
Tumor
0.3
536
Normal
0.3
1027
Tumor
0.3
467
Tumor
0.3
492
Normal
0.3
963
Tumor
0.3
124
Normal
0.3
953
Tumor
0.3
966
Normal
0.3
283
Tumor
0.3
365
Tumor
0.3
491
Tumor
0.2
697
Tumor
0.2
538
Normal
0.2
455
Tumor
0.2
525
Tumor
0.2
383
Tumor
0.2
351
Tumor
0.2
188
Normal
0.2
917
Tumor
0.2
461
Tumor
0.2
713
Tumor
0.2
473
Tumor
0.2
126
Normal
0.2
366
Normal
0.2
368
Normal
0.2
1028
Normal
0.2
224
Normal
0.2
497
Tumor
0.2
385
Tumor
0.2
977
Tumor
0.2
663
Tumor
0.2
721
Tumor
0.2
185
Tumor
0.2
147
Tumor
0.2
447
Tumor
0.2
954
Normal
0.2
952
Normal
0.1
213
Tumor
0.1
861
Tumor
0.1
125
Tumor
0.1
857
Tumor
0.1
268
Normal
0.1
344
Normal
0.1
978
Normal
0.1
881
Tumor
0.1
943
Tumor
0.1
662
Normal
0.1
1031
Tumor
0.1
573
Tumor
0.1
415
Tumor
0.1
362
Normal
0.1
814
Normal
0.1
217
Tumor
0.1
138
Normal
0.1
355
Tumor
0.1
498
Normal
0.1
272
Normal
0.1
571
Tumor
0.1
384
Normal
0.1
413
Tumor
0.1
983
Tumor
0.1
328
Normal
0.1
815
Tumor
0.1
778
Normal
0.1
916
Normal
0.1
913
Tumor
0.1
823
Tumor
0.1
914
Normal
0.1
451
Tumor
0.1
984
Normal
0.1
192
Normal
0.1
1015
Tumor
0.1
375
Tumor
0.1
627
Tumor
0.1
388
Normal
0.1
212
Normal
0.1
956
Normal
0.1
363
Tumor
0.1
858
Normal
0.1
352
Normal
0.1
223
Tumor
0.1
277
Tumor
0.1
686
Normal
0.1
558
Normal
0.1
471
Tumor
0.1
141
Tumor
0.1
396
Normal
0.1
537
Tumor
0.1
387
Tumor
0.1
955
Tumor
0.1
553
Tumor
0.0
777
Tumor
0.0
923
Tumor
0.0
817
Tumor
0.0
852
Normal
0.0
938
Normal
0.0
332
Normal
0.0
816
Normal
0.0
478
Normal
0.0
554
Normal
0.0
271
Tumor
0.0
672
Normal
0.0
341
Tumor
0.0
976
Normal
0.0
563
Tumor
0.0
494
Normal
0.0
824
Normal
0.0
123
Tumor
0.0
926
Normal
0.0
386
Normal
0.0
518
Normal
0.0
465
Tumor
0.0
232
Normal
0.0
111
Normal
0.0
716
Normal
0.0
722
Normal
0.0
142
Normal
0.0
975
Tumor
0.0
357
Tumor
0.0
493
Tumor
0.0
818
Normal
0.0
1026
Normal
0.0
1044
Normal
0.0
114
Normal
0.0
664
Normal
0.0
474
Normal
0.0
1032
Normal
0.0
1042
Normal
0.0
195
Tumor
0.0
376
Normal
0.0
1043
Tumor
0.0
172
Normal
0.0
278
Normal
0.0
526
Normal
0.0
218
Normal
0.0
394
Normal
0.0
286
Normal
0.0
313
Tumor
0.0
228
Normal
0.0
483
Tumor
0.0
468
Normal
0.0
557
Tumor
0.0
516
Normal
0.0
648
Normal
0.0
187
Tumor
0.0
361
Tumor
0.0
214
Normal
0.0
813
Tumor
0.0
358
Normal
0.0
873
Tumor
0.0
432
Normal
0.0
628
Normal
0.0
528
Normal
0.0
924
Normal
0.0
666
Normal
0.0
421
Tumor
0.0
698
Normal
0.0
568
Normal
0.0
488
Normal
0.0
146
Normal
0.0
327
Tumor
0.0
435
Tumor
0.0
284
Normal
0.0
944
Normal
0.0
867
Tumor
0.0
425
Tumor
0.0
738
Normal
0.0
145
Tumor
0.0
957
Tumor
0.0
136
Normal
0.0
755
Tumor
-0.1
968
Normal
-0.1
132
Normal
-0.1
356
Normal
-0.1
567
Tumor
-0.1
392
Normal
-0.1
364
Normal
-0.1
564
Normal
-0.1
728
Normal
-0.1
135
Tumor
-0.1
964
Normal
-0.1
297
Tumor
-0.1
868
Normal
-0.1
416
Normal
-0.1
312
Normal
-0.1
866
Normal
-0.1
462
Normal
-0.1
744
Normal
-0.1
258
Normal
-0.1
314
Normal
-0.1
452
Normal
-0.1
466
Normal
-0.1
671
Tumor
-0.1
937
Tumor
-0.1
448
Normal
-0.1
696
Normal
-0.1
1045
Tumor
-0.1
412
Normal
-0.1
874
Normal
-0.1
1014
Normal
-0.1
162
Normal
-0.1
915
Tumor
-0.1
883
Tumor
-0.1
922
Normal
-0.1
864
Normal
-0.1
1016
Normal
-0.1
444
Normal
-0.1
1046
Normal
-0.1
427
Tumor
-0.1
862
Normal
-0.1
463
Tumor
-0.1
514
Normal
-0.1
756
Normal
-0.1
113
Tumor
-0.1
456
Normal
-0.1
574
Normal
-0.1
714
Normal
-0.1
572
Normal
-0.1
1022
Normal
-0.1
261
Tumor
-0.1
161
Tumor
-0.1
227
Tumor
-0.1
331
Tumor
-0.1
472
Normal
-0.1
715
Tumor
-0.1
741
Tumor
-0.1
1041
Tumor
-0.1
1021
Tumor
-0.1
786
Normal
-0.1
545
Tumor
-0.1
918
Normal
-0.2
464
Normal
-0.2
298
Normal
-0.2
186
Normal
-0.2
546
Normal
-0.2
481
Tumor
-0.2
423
Tumor
-0.2
414
Normal
-0.2
617
Tumor
-0.2
636
Normal
-0.2
958
Normal
-0.2
527
Tumor
-0.2
431
Tumor
-0.2
354
Normal
-0.2
433
Tumor
-0.2
785
Tumor
-0.2
1025
Tumor
-0.2
128
Normal
-0.2
647
Tumor
-0.2
424
Normal
-0.2
685
Tumor
-0.2
534
Normal
-0.2
148
Normal
-0.2
882
Normal
-0.2
267
Tumor
-0.2
477
Tumor
-0.2
196
Normal
-0.2
422
Normal
-0.2
221
Tumor
-0.2
342
Normal
-0.2
446
Normal
-0.2
742
Normal
-0.2
482
Normal
-0.2
484
Normal
-0.2
746
Normal
-0.3
353
Tumor
-0.3
426
Normal
-0.3
436
Normal
-0.3
515
Tumor
-0.3
912
Normal
-0.3
723
Tumor
-0.3
641
Tumor
-0.3
982
Normal
-0.3
131
Tumor
-0.3
222
Normal
-0.3
878
Normal
-0.3
127
Tumor
-0.3
965
Tumor
-0.3
727
Tumor
-0.3
618
Normal
-0.3
533
Tumor
-0.3
884
Normal
-0.3
877
Tumor
-0.3
137
Tumor
-0.4
695
Tumor
-0.4
523
Tumor
-0.4
428
Normal
-0.4
615
Tumor
-0.4
616
Normal
-0.4
921
Tumor
-0.4
745
Tumor
-0.4
865
Tumor
-0.4
642
Normal
-0.4
967
Tumor
-0.4
112
Tumor
-0.4
513
Tumor
-0.4
863
Tumor
-0.4
635
Tumor
-0.4
445
Tumor
-0.4
393
Tumor
-0.4
285
Tumor
-0.5
981
Tumor
-0.5
487
Tumor
-0.5
443
Tumor
-0.5
743
Tumor
-0.5
911
Tumor
-0.5
517
Tumor
-0.5
737
Tumor
-0.6
257
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
