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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PMF1-BGLAP is not prognostic in Testicular Germ Cell Tumor (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.2
Number of samples
133
Samples
Sample
Description
TPM
TCGA-2G-AAL5-01A
0 years, male, white, stage:Stage I, alive, 7437 days
28.3
TCGA-YU-A94D-01A
0 years, male, stage:Stage IIIB, alive, 2167 days
27.5
TCGA-YU-AA61-01A
0 years, male, white, stage:Stage IS, alive, 864 days
20.0
TCGA-2G-AAGN-01A
0 years, male, white, stage:Stage IIIB, alive, 3656 days
18.5
TCGA-XE-A9SE-01A
0 years, male, white, stage:Stage IA, alive, 708 days
17.0
TCGA-2G-AAH4-01A
0 years, male, white, stage:Stage II, alive, 6210 days
16.3
TCGA-XE-AAOC-01A
0 years, male, white, stage:Stage IA, alive, 270 days
16.2
TCGA-2G-AAFZ-01A
0 years, male, white, stage:Stage III, alive, 1353 days
13.1
TCGA-2G-AAKM-01A
0 years, male, white, stage:Stage II, dead, 6972 days
12.9
TCGA-SN-A84W-01A
0 years, male, white, stage:Stage IS, alive, 293 days
12.5
TCGA-2G-AAFJ-01A
0 years, male, asian, stage:'--, alive, 792 days
12.4
TCGA-2G-AAGY-01A
0 years, male, white, stage:Stage IS, alive, 5329 days
11.4
TCGA-2G-AAGI-01A
0 years, male, white, stage:Stage IS, alive, 3137 days
10.8
TCGA-2G-AAGM-01A
0 years, male, white, stage:Stage IS, alive, 3891 days
10.7
TCGA-2G-AAGG-01A
0 years, male, white, stage:Stage IIIC, alive, 2611 days
10.5
TCGA-2G-AAFN-01A
0 years, male, white, stage:Stage IIIB, alive, 773 days
10.5
TCGA-2G-AALP-01A
0 years, male, white, stage:Stage IIIB, alive, 2645 days
10.0
TCGA-XY-A9T9-01A
0 years, male, white, stage:Stage IS, alive, 281 days
9.8
TCGA-XE-AAOJ-01A
0 years, male, white, stage:Stage IS, alive, 1550 days
9.7
TCGA-XE-AANI-01A
0 years, male, white, stage:Stage IS, alive, 1041 days
8.9
TCGA-2G-AAGX-01A
0 years, male, white, stage:Stage IA, alive, 5514 days
8.2
TCGA-2G-AAG3-01A
0 years, male, white, stage:Stage IS, alive, 1593 days
8.1
TCGA-2G-AAKG-01A
0 years, male, white, stage:Stage I, alive, 6598 days
7.4
TCGA-2G-AAH3-01A
0 years, male, white, stage:Stage I, alive, 1822 days
7.3
TCGA-2G-AAH2-01A
0 years, male, white, stage:Stage IS, alive, 6060 days
7.0
TCGA-2G-AAGZ-01A
0 years, male, white, stage:Stage IIIA, alive, 5233 days
6.7
TCGA-SN-A84X-01A
0 years, male, white, stage:Stage IS, alive, 312 days
6.5
TCGA-2G-AAG0-01A
0 years, male, white, stage:Stage IS, alive, 1529 days
6.4
TCGA-2G-AAGP-01A
0 years, male, white, stage:Stage IIA, alive, 4018 days
6.1
TCGA-W4-A7U4-01A
0 years, male, white, stage:'--, alive, 738 days
5.9
TCGA-2G-AAG6-01A
0 years, male, white, stage:Stage IS, alive, 2231 days
5.8
TCGA-VF-A8A8-01A
0 years, male, white, stage:Stage IA, alive, 1131 days
5.7
TCGA-2G-AAGV-01A
0 years, male, white, stage:'--, alive, 4527 days
5.6
TCGA-XE-A8H1-01A
0 years, male, white, stage:Stage IS, alive, 209 days
5.4
TCGA-2G-AAHP-01A
0 years, male, white, stage:Stage IS, alive, 5667 days
5.2
TCGA-2G-AAFO-01A
0 years, male, white, stage:Stage IIA, alive, 685 days
5.2
TCGA-2G-AAFI-01A
0 years, male, white, stage:Stage IB, alive, 675 days
5.2
TCGA-YU-A90Y-01A
0 years, male, black or african american, stage:Stage IIIC, dead, 17 days
4.9
TCGA-2G-AAHN-01A
0 years, male, white, stage:Stage I, alive, 6445 days
4.9
TCGA-2G-AAG7-01A
0 years, male, white, stage:Stage IS, alive, 2475 days
4.9
TCGA-2G-AAGC-01A
0 years, male, white, stage:Stage IS, alive, 2585 days
4.8
TCGA-2G-AAHL-01A
0 years, male, white, stage:Stage I, alive, 7081 days
4.4
TCGA-2G-AAG5-01A
0 years, male, white, stage:Stage IS, alive, 2299 days
4.4
TCGA-2G-AAH8-01A
0 years, male, white, stage:Stage IIIC, alive, 2248 days
4.3
TCGA-2G-AAFM-01A
0 years, male, white, stage:Stage IIA, alive, 503 days
4.2
TCGA-XE-AAO3-01A
0 years, male, asian, stage:Stage I, alive, 2857 days
4.2
TCGA-YU-A90P-01A
0 years, male, white, stage:Stage IA, alive, 2069 days
4.1
TCGA-2G-AAGK-01A
0 years, male, white, stage:Stage IS, alive, 3621 days
4.1
TCGA-XE-A8H5-01A
0 years, male, stage:Stage IS, alive, 1217 days
3.8
TCGA-2G-AAEW-01A
0 years, male, white, stage:Stage IS, dead, 618 days
3.8
TCGA-YU-A912-01A
0 years, male, black or african american, stage:Stage IIIC, alive, 866 days
3.7
TCGA-WZ-A7V5-01A
0 years, male, white, stage:Stage I, alive, 1061 days
3.6
TCGA-YU-A90Q-01A
0 years, male, stage:Stage IB, alive, 1964 days
3.6
TCGA-2G-AAKH-01A
0 years, male, white, stage:Stage II, alive, 6862 days
3.6
TCGA-XE-AAOB-01A
0 years, male, white, stage:Stage IS, dead, 513 days
3.6
TCGA-2G-AAF8-01A
0 years, male, white, stage:Stage IA, alive, 3911 days
3.6
TCGA-XE-A8H4-01A
0 years, male, white, stage:Stage IA, alive, 559 days
3.5
TCGA-2G-AAHG-01A
0 years, male, white, stage:Stage I, alive, 1819 days
3.5
TCGA-4K-AA1I-01A
0 years, male, white, stage:Stage IA, alive, 3 days
3.4
TCGA-2G-AAFY-01A
0 years, male, white, stage:Stage IIA, alive, 1099 days
3.3
TCGA-2G-AAGO-01A
0 years, male, white, stage:Stage IS, alive, 4026 days
3.3
TCGA-2G-AAG9-01A
0 years, male, white, stage:Stage IIIB, alive, 2234 days
3.2
TCGA-VF-A8AA-01A
0 years, male, white, stage:Stage I, alive, 1146 days
3.1
TCGA-2G-AAHA-01A
0 years, male, white, stage:Stage IB, alive, 3349 days
3.0
TCGA-S6-A8JW-01A
0 years, male, white, stage:Stage IS, alive, 698 days
3.0
TCGA-2G-AAGJ-01A
0 years, male, black or african american, stage:Stage IA, alive, 2938 days
2.9
TCGA-VF-A8AC-01A
0 years, male, white, stage:Stage IA, alive, 1083 days
2.8
TCGA-VF-A8AE-01A
0 years, male, white, stage:Stage IA, alive, 727 days
2.8
TCGA-VF-A8AD-01A
0 years, male, white, stage:Stage IB, alive, 1006 days
2.7
TCGA-2G-AAF1-01A
0 years, male, asian, stage:Stage IS, alive, 1403 days
2.7
TCGA-WZ-A7V4-01A
0 years, male, white, stage:Stage I, alive, 894 days
2.6
TCGA-4K-AA1H-01A
0 years, male, white, stage:Stage IA, alive, 518 days
2.5
TCGA-2G-AAF4-01A
0 years, male, white, stage:Stage I, alive, 2315 days
2.4
TCGA-2X-A9D5-01A
0 years, male, white, stage:Stage I, alive, 435 days
2.4
TCGA-S6-A8JY-01A
0 years, male, white, stage:Stage IS, alive, 278 days
2.4
TCGA-2G-AAFH-01A
0 years, male, white, stage:Stage IIB, alive, 1375 days
2.4
TCGA-XE-AAOD-01A
0 years, male, white, stage:Stage IB, alive, 2058 days
2.3
TCGA-WZ-A8D5-01A
0 years, male, white, stage:'--, alive, 774 days
2.3
TCGA-2G-AAH0-01A
0 years, male, white, stage:Stage IS, alive, 5477 days
2.2
TCGA-YU-A90S-01A
0 years, male, white, stage:Stage IA, alive, 971 days
2.1
TCGA-ZM-AA0B-01A
0 years, male, white, stage:Stage IA, alive, 838 days
2.0
TCGA-W4-A7U2-01A
0 years, male, white, stage:'--, alive, 1263 days
1.9
TCGA-XE-AANV-01A
0 years, male, stage:Stage IB, alive, 1701 days
1.9
TCGA-YU-A90W-01A
0 years, male, white, stage:Stage IA, alive, 1113 days
1.8
TCGA-VF-A8A9-01A
0 years, male, white, stage:Stage IA, alive, 1119 days
1.8
TCGA-2G-AAF6-01A
0 years, male, white, stage:Stage IS, alive, 3491 days
1.7
TCGA-XE-AANR-01A
0 years, male, white, stage:Stage I, alive, 14 days
1.6
TCGA-SO-A8JP-01A
0 years, male, white, stage:Stage I, alive, 540 days
1.5
TCGA-2X-A9D6-01A
0 years, male, white, stage:Stage I, alive, 607 days
1.3
TCGA-SB-A6J6-01A
0 years, male, white, stage:Stage IA, alive, 413 days
1.3
TCGA-2G-AAFG-01A
0 years, male, white, stage:Stage IS, alive, 6183 days
1.3
TCGA-XE-AAO6-01A
0 years, male, white, stage:Stage IA, alive, 240 days
1.2
TCGA-ZM-AA0N-01A
0 years, male, white, stage:Stage IB, alive, 634 days
1.1
TCGA-ZM-AA0D-01A
0 years, male, white, stage:Stage IA, alive, 848 days
1.0
TCGA-XE-AAO4-01A
0 years, male, white, stage:Stage IA, alive, 367 days
0.9
TCGA-ZM-AA06-01A
0 years, male, white, stage:Stage IB, alive, 1498 days
0.8
TCGA-ZM-AA0E-01A
0 years, male, white, stage:Stage IA, alive, 811 days
0.6
TCGA-ZM-AA0H-01A
0 years, male, white, stage:Stage IS, alive, 1736 days
0.6
TCGA-XE-AAOL-01A
0 years, male, black or african american, stage:Stage I, alive, 13 days
0.5
TCGA-ZM-AA0F-01A
0 years, male, white, stage:Stage IA, alive, 681 days
0.3
TCGA-XY-A89B-01A
0 years, male, white, stage:Stage IA, alive, 471 days
0.0
TCGA-2G-AAGT-01A
0 years, male, white, stage:Stage IS, alive, 4406 days
0.0
TCGA-XE-AANJ-01A
0 years, male, white, stage:Stage IS, alive, 2007 days
0.0
TCGA-2G-AAHC-01A
0 years, male, white, stage:Stage IS, alive, 5539 days
0.0
TCGA-4K-AA1G-01A
0 years, male, white, stage:Stage IS, alive, 436 days
0.0
TCGA-2G-AAKD-01A
0 years, male, white, stage:Stage III, alive, 6340 days
0.0
TCGA-2G-AAEX-01A
0 years, male, white, stage:Stage IS, alive, 1259 days
0.0
TCGA-2G-AAGW-01A
0 years, male, white, stage:Stage IS, alive, 4899 days
0.0
TCGA-ZM-AA05-01A
0 years, male, white, stage:Stage IIC, alive, 1126 days
0.0
TCGA-W4-A7U3-01A
0 years, male, white, stage:'--, alive, 149 days
0.0
TCGA-SB-A76C-01A
0 years, male, white, stage:'--, alive, 42 days
0.0
TCGA-2G-AAKL-01A
0 years, male, white, stage:Stage II, alive, 7023 days
0.0
TCGA-4K-AAAL-01A
0 years, male, white, stage:Stage IS, alive, 483 days
0.0
TCGA-2G-AAL7-01A
0 years, male, white, stage:Stage IS, alive, 3991 days
0.0
TCGA-2G-AAGS-01A
0 years, male, white, stage:Stage IIIB, alive, 4816 days
0.0
TCGA-YU-AA4L-01A
0 years, male, black or african american, stage:Stage IIIC, alive, 1573 days
0.0
TCGA-WZ-A7V3-01A
0 years, male, white, stage:Stage I, alive, 753 days
0.0
TCGA-2G-AAFL-01A
0 years, male, white, stage:Stage IB, alive, 750 days
0.0
TCGA-2G-AAG8-01A
0 years, male, white, stage:Stage IB, alive, 2289 days
0.0
TCGA-2G-AAGA-01A
0 years, male, white, stage:Stage IIA, alive, 2439 days
0.0
TCGA-X3-A8G4-01A
0 years, male, white, stage:Stage IS, alive, 856 days
0.0
TCGA-2G-AAGE-01A
0 years, male, white, stage:Stage IS, alive, 2478 days
0.0
TCGA-2G-AAGF-01A
0 years, male, white, stage:Stage IS, alive, 2734 days
0.0
TCGA-S6-A8JX-01A
0 years, male, white, stage:Stage IB, alive, 552 days
0.0
TCGA-2G-AAFE-01A
0 years, male, white, stage:Stage IIA, alive, 4702 days
0.0
TCGA-2G-AAHT-01A
0 years, male, white, stage:Stage IS, alive, 542 days
0.0
TCGA-YU-A94I-01A
0 years, male, stage:Stage IA, alive, 536 days
0.0
TCGA-SN-A84Y-01A
0 years, male, white, stage:Stage IS, alive, 524 days
0.0
TCGA-VF-A8AB-01A
0 years, male, black or african american, stage:Stage IA, alive, 760 days
0.0
TCGA-2G-AAFV-01A
0 years, male, white, stage:Stage IS, alive, 1389 days
0.0
TCGA-XE-AAOF-01A
0 years, male, asian, stage:Stage IA, alive, 1268 days
0.0
TCGA-SN-A6IS-01A
0 years, male, white, stage:Stage IS, alive, 496 days
0.0
TCGA-XY-A8S2-01A
0 years, male, white, stage:Stage I, alive, 672 days
0.0
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TESTIS CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
The Human Protein Atlas project is funded
