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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
5.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
2.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.3
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
3.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
3.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
1.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
1.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
1.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
1.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
1.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
0.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
698
Normal
5.4
448
Normal
4.5
1046
Normal
4.4
671
Tumor
2.4
343
Tumor
2.2
162
Normal
2.1
917
Tumor
1.9
161
Tumor
1.9
172
Normal
1.9
186
Normal
1.8
395
Tumor
1.7
188
Normal
1.7
713
Tumor
1.6
185
Tumor
1.4
148
Normal
1.0
672
Normal
0.9
697
Tumor
0.9
358
Normal
0.8
491
Tumor
0.8
722
Normal
0.8
385
Tumor
0.8
1044
Normal
0.8
394
Normal
0.8
493
Tumor
0.7
351
Tumor
0.7
545
Tumor
0.7
391
Tumor
0.7
342
Normal
0.6
352
Normal
0.6
744
Normal
0.6
444
Normal
0.6
815
Tumor
0.6
666
Normal
0.6
467
Tumor
0.6
488
Normal
0.6
171
Tumor
0.6
976
Normal
0.6
498
Normal
0.5
1016
Normal
0.5
1042
Normal
0.5
478
Normal
0.5
858
Normal
0.5
447
Tumor
0.5
546
Normal
0.5
816
Normal
0.5
1026
Normal
0.4
573
Tumor
0.4
482
Normal
0.4
363
Tumor
0.4
938
Normal
0.4
344
Normal
0.4
661
Tumor
0.4
396
Normal
0.4
982
Normal
0.4
984
Normal
0.4
451
Tumor
0.4
574
Normal
0.4
786
Normal
0.4
376
Normal
0.4
356
Normal
0.3
422
Normal
0.3
452
Normal
0.3
472
Normal
0.3
111
Normal
0.3
412
Normal
0.3
432
Normal
0.3
142
Normal
0.3
147
Tumor
0.3
568
Normal
0.3
132
Normal
0.3
354
Normal
0.3
386
Normal
0.3
388
Normal
0.3
564
Normal
0.2
366
Normal
0.2
413
Tumor
0.2
746
Normal
0.2
778
Normal
0.2
414
Normal
0.2
525
Tumor
0.2
756
Normal
0.2
494
Normal
0.2
428
Normal
0.2
1025
Tumor
0.2
424
Normal
0.2
187
Tumor
0.2
926
Normal
0.1
964
Normal
0.1
665
Tumor
0.1
662
Normal
0.1
1014
Normal
0.1
286
Normal
0.1
648
Normal
0.1
978
Normal
0.1
368
Normal
0.1
464
Normal
0.1
1032
Normal
0.1
963
Tumor
0.1
952
Normal
0.1
536
Normal
0.1
558
Normal
0.1
353
Tumor
0.1
526
Normal
0.1
298
Normal
0.1
364
Normal
0.1
966
Normal
0.1
1022
Normal
0.1
823
Tumor
0.0
664
Normal
0.0
685
Tumor
0.0
136
Normal
0.0
284
Normal
0.0
852
Normal
0.0
124
Normal
0.0
138
Normal
0.0
968
Normal
0.0
425
Tumor
0.0
145
Tumor
0.0
423
Tumor
0.0
723
Tumor
-0.1
818
Normal
-0.1
474
Normal
-0.1
716
Normal
-0.1
455
Tumor
-0.1
481
Tumor
-0.1
427
Tumor
-0.1
916
Normal
-0.1
824
Normal
-0.1
228
Normal
-0.1
492
Normal
-0.1
446
Normal
-0.1
341
Tumor
-0.1
362
Normal
-0.1
981
Tumor
-0.1
714
Normal
-0.1
1043
Tumor
-0.2
456
Normal
-0.2
436
Normal
-0.2
516
Normal
-0.2
567
Tumor
-0.2
462
Normal
-0.2
742
Normal
-0.2
426
Normal
-0.2
392
Normal
-0.2
572
Normal
-0.2
128
Normal
-0.2
1021
Tumor
-0.2
518
Normal
-0.2
384
Normal
-0.2
227
Tumor
-0.2
146
Normal
-0.2
1041
Tumor
-0.2
728
Normal
-0.2
538
Normal
-0.2
686
Normal
-0.2
328
Normal
-0.2
468
Normal
-0.2
514
Normal
-0.3
857
Tumor
-0.3
755
Tumor
-0.3
393
Tumor
-0.3
497
Tumor
-0.3
114
Normal
-0.3
434
Normal
-0.3
1031
Tumor
-0.3
466
Normal
-0.3
851
Tumor
-0.3
465
Tumor
-0.3
696
Normal
-0.4
738
Normal
-0.4
127
Tumor
-0.4
956
Normal
-0.4
535
Tumor
-0.4
285
Tumor
-0.4
224
Normal
-0.4
484
Normal
-0.4
1028
Normal
-0.4
131
Tumor
-0.4
534
Normal
-0.4
663
Tumor
-0.4
513
Tumor
-0.4
524
Normal
-0.4
563
Tumor
-0.4
421
Tumor
-0.4
416
Normal
-0.4
721
Tumor
-0.5
463
Tumor
-0.5
924
Normal
-0.5
918
Normal
-0.5
647
Tumor
-0.5
958
Normal
-0.5
357
Tumor
-0.6
283
Tumor
-0.6
983
Tumor
-0.6
517
Tumor
-0.6
954
Normal
-0.6
943
Tumor
-0.6
314
Normal
-0.6
915
Tumor
-0.6
415
Tumor
-0.6
387
Tumor
-0.6
515
Tumor
-0.6
361
Tumor
-0.7
571
Tumor
-0.7
212
Normal
-0.7
977
Tumor
-0.7
126
Normal
-0.7
922
Normal
-0.7
431
Tumor
-0.7
557
Tumor
-0.7
727
Tumor
-0.7
332
Normal
-0.7
1015
Tumor
-0.7
473
Tumor
-0.7
528
Normal
-0.8
955
Tumor
-0.8
487
Tumor
-0.8
112
Tumor
-0.8
312
Normal
-0.8
461
Tumor
-0.8
967
Tumor
-0.8
327
Tumor
-0.8
944
Normal
-0.8
554
Normal
-0.8
923
Tumor
-0.8
975
Tumor
-0.9
817
Tumor
-0.9
715
Tumor
-0.9
743
Tumor
-0.9
523
Tumor
-0.9
483
Tumor
-0.9
435
Tumor
-0.9
278
Normal
-0.9
123
Tumor
-0.9
527
Tumor
-0.9
311
Tumor
-1.0
745
Tumor
-1.0
537
Tumor
-1.0
1045
Tumor
-1.0
937
Tumor
-1.0
921
Tumor
-1.0
443
Tumor
-1.0
737
Tumor
-1.0
1027
Tumor
-1.0
211
Tumor
-1.0
477
Tumor
-1.0
925
Tumor
-1.1
953
Tumor
-1.1
741
Tumor
-1.1
331
Tumor
-1.1
553
Tumor
-1.2
223
Tumor
-1.2
471
Tumor
-1.2
1013
Tumor
-1.2
383
Tumor
-1.2
367
Tumor
-1.2
135
Tumor
-1.2
695
Tumor
-1.2
965
Tumor
-1.2
813
Tumor
-1.3
113
Tumor
-1.3
141
Tumor
-1.3
365
Tumor
-1.4
957
Tumor
-1.4
355
Tumor
-1.4
297
Tumor
-1.4
814
Normal
-1.4
533
Tumor
-1.4
951
Tumor
-1.4
375
Tumor
-1.5
411
Tumor
-1.5
777
Tumor
-1.5
785
Tumor
-1.6
137
Tumor
-1.6
433
Tumor
-1.7
724
Normal
-1.9
277
Tumor
-1.9
445
Tumor
-2.0
313
Tumor
-2.1
125
Tumor
-2.7
231
Tumor
N/A
232
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
267
Tumor
N/A
268
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
861
Tumor
N/A
862
Normal
N/A
863
Tumor
N/A
864
Normal
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
635
Tumor
N/A
877
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
222
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
