MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:139.7 nTPM
HPA Brain:102.4 nTPM
GTEx:139.7 nTPM
FANTOM5:468.2 Scaled Tags Per Million
Pig:204.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 102.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 75.2
1870 Female, age 42, unknown 100.3
1827 Male, age 72, unknown 84.2
1833 Male, age 53, unknown 77.0
1830 Male, age 51, unknown 75.6
2411 Female, age 72, unknown 75.6
2019 Male, age 18, unknown 71.9
2219 Male, age 76, both hemispheres 70.5
2586 Male, age 75, left hemisphere 69.5
2666 Male, age 74, left hemisphere 69.0
2828 Female, age 72, unknown 57.8
Dorsal raphe nucleus
nTPM: 80.2
2750 Male, age 76, both hemispheres 89.4
2298 Female, age 72, unknown 81.3
2047 Male, age 72, unknown 78.8
2016 Female, age 72, unknown 77.6
1828 Male, age 53, unknown 73.6
Inferior colliculus
nTPM: 84.2
1848 Female, age 42, unknown 88.2
2097 Female, age 72, unknown 87.4
2849 Male, age 72, unknown 82.2
1890 Male, age 53, unknown 79.1
Median raphe nucleus
nTPM: 102.4
2220 Male, age 76, midline 102.4
Periaquaductal grey, anterior
nTPM: 81.0
1947 Male, age 18, unknown 92.6
2502 Female, age 75, unknown 77.0
1795 Male, age 51, unknown 73.4
Periaquaductal grey, dorsal
nTPM: 78.5
2850 Male, age 76, both hemispheres 87.6
1840 Male, age 53, unknown 85.2
1831 Male, age 72, unknown 77.1
2464 Female, age 72, unknown 64.3
Periaquaductal grey, lateral
nTPM: 70.6
2053 Male, age 18, unknown 78.9
2140 Male, age 76, both hemispheres 70.6
2272 Male, age 74, both hemispheres 62.2
Pretectal area
nTPM: 86.2
2667 Female, age 75, unknown 102.0
1816 Male, age 51, unknown 93.3
1944 Female, age 72, unknown 92.1
1817 Female, age 42, unknown 90.2
2407 Male, age 75, both hemispheres 89.9
2007 Male, age 72, unknown 86.8
2224 Female, age 72, unknown 85.1
1815 Male, age 53, unknown 84.8
2316 Male, age 76, right hemisphere 77.9
2825 Male, age 18, unknown 77.6
2273 Male, age 74, both hemispheres 68.9
Red nucleus
nTPM: 79.5
1821 Female, age 72, unknown 100.7
2725 Female, age 75, unknown 100.4
1954 Female, age 42, unknown 80.8
2584 Male, age 75, left hemisphere 79.4
1865 Male, age 51, unknown 78.3
1904 Male, age 53, unknown 77.9
2823 Male, age 76, right hemisphere 76.4
2503 Female, age 72, unknown 73.9
2227 Male, age 72, unknown 73.7
2769 Male, age 72, unknown 73.0
2785 Male, age 18, unknown 71.2
2588 Male, age 74, left hemisphere 68.0
Substantia nigra
nTPM: 79.4
1889 Female, age 72, unknown 96.2
2241 Male, age 72, unknown 94.0
1941 Male, age 53, unknown 83.5
1916 Female, age 42, unknown 83.0
2409 Female, age 72, unknown 82.2
2665 Male, age 74, both hemispheres 77.5
1851 Male, age 51, unknown 77.4
2699 Male, age 18, unknown 75.0
2583 Male, age 75, right hemisphere 63.6
2590 Female, age 75, unknown 61.2
Superior colliculus
nTPM: 77.8
1895 Male, age 76, right hemisphere 95.0
1913 Female, age 42, unknown 81.4
1796 Male, age 53, unknown 81.2
1839 Male, age 51, unknown 81.2
2261 Male, age 18, unknown 79.8
2087 Female, age 72, unknown 78.9
2587 Male, age 74, left hemisphere 73.8
2664 Male, age 75, both hemispheres 69.1
1995 Male, age 72, unknown 68.9
2668 Female, age 75, unknown 68.8
Ventral tegmental area
nTPM: 77.1
2223 Female, age 72, unknown 86.0
1915 Female, age 42, unknown 82.9
2218 Male, age 76, both hemispheres 80.7
1942 Male, age 51, unknown 74.6
2021 Male, age 53, unknown 72.4
2410 Female, age 72, unknown 66.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 139.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 139.7
Samples: 139

Max nTPM: 228.8
Min nTPM: 76.5
Std nTPM: 26.2
Median nTPM: 140.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 228.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 214.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 210.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 203.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 193.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 188.5
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 183.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 182.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 181.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 178.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 178.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 468.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 468.2
FF:10158-103A5 76 years, female 468.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 204.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 178.2
Samples: 4

Max nTPM: 188.5
Min nTPM: 166.5
Sample A Female 185.5
Sample B Female 166.5
Sample C Male 172.3
Sample D Male 188.5
Midbrain
nTPM: 204.5
Samples: 4

Max nTPM: 258.5
Min nTPM: 168.6
Sample A Female 258.5
Sample B Female 216.3
Sample C Male 168.6
Sample D Male 174.5
Periaqueductal gray
nTPM: 180.8
Samples: 3

Max nTPM: 198.9
Min nTPM: 158.5
Sample B Female 198.9
Sample C Male 185.1
Sample D Male 158.5
Superior colliculi
nTPM: 190.8
Samples: 4

Max nTPM: 214.9
Min nTPM: 161.6
Sample A Female 214.9
Sample B Female 161.6
Sample C Male 187.1
Sample D Male 199.4

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