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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SAA2-SAA4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A459-01A
47 years, male, asian, stage:Stage II, alive, 910 days
262.7
TCGA-LG-A9QD-01A
68 years, male, white, stage:Stage IIIA, alive, 366 days
209.9
TCGA-WQ-AB4B-01A
62 years, male, white, stage:Stage II, alive, 395 days
166.8
TCGA-2Y-A9GW-01A
64 years, male, white, stage:Stage I, dead, 1271 days
159.1
TCGA-DD-AADQ-01A
59 years, male, asian, stage:Stage II, alive, 436 days
158.2
TCGA-DD-A1ED-01A
68 years, male, white, stage:Stage I, alive, 2301 days
153.4
TCGA-2Y-A9GT-01A
51 years, male, white, stage:Stage I, dead, 1624 days
136.7
TCGA-HP-A5MZ-01A
78 years, male, stage:Stage I, dead, 91 days
124.1
TCGA-DD-AAC9-01A
51 years, male, asian, stage:Stage I, alive, 347 days
117.4
TCGA-O8-A75V-01A
54 years, male, stage:Stage I, alive, 538 days
107.4
TCGA-DD-AAVX-01A
38 years, male, asian, stage:Stage II, alive, 1718 days
106.4
TCGA-DD-A4NL-01A
46 years, male, white, stage:Stage I, alive, 1711 days
99.5
TCGA-2Y-A9GV-01A
54 years, female, white, stage:Stage I, dead, 2532 days
93.2
TCGA-ZS-A9CD-01A
73 years, male, white, stage:Stage II, dead, 1386 days
79.4
TCGA-GJ-A3OU-01A
59 years, male, white, stage:Stage I, alive, 879 days
77.3
TCGA-DD-AACT-01A
69 years, female, asian, stage:Stage I, alive, 1562 days
75.7
TCGA-DD-A1EK-01A
64 years, female, white, stage:Stage IVB, dead, 558 days
73.4
TCGA-DD-AADK-01A
68 years, female, asian, stage:Stage II, alive, 1049 days
69.5
TCGA-DD-AACD-01A
48 years, male, asian, stage:Stage I, dead, 381 days
69.2
TCGA-DD-A4NO-01A
65 years, male, white, stage:Stage I, alive, 2245 days
63.3
TCGA-K7-A6G5-01A
66 years, male, white, stage:Stage I, alive, 512 days
59.5
TCGA-BD-A3ER-01A
62 years, male, white, stage:Stage II, alive, 1115 days
58.4
TCGA-DD-A4NP-01A
32 years, male, white, stage:Stage I, alive, 3308 days
53.3
TCGA-G3-A7M7-01A
65 years, male, white, stage:Stage I, alive, 361 days
52.3
TCGA-K7-A5RG-01A
66 years, male, black or african american, stage:Stage I, alive, 519 days
48.8
TCGA-G3-A25V-01A
68 years, male, white, stage:Stage I, alive, 860 days
48.6
TCGA-G3-A5SK-01A
58 years, male, white, stage:Stage I, alive, 744 days
44.6
TCGA-G3-A5SM-01A
58 years, male, white, stage:Stage II, alive, 520 days
43.8
TCGA-DD-A11C-01A
69 years, male, white, stage:Stage I, alive, 662 days
43.0
TCGA-BC-A10S-01A
81 years, male, white, stage:'--, dead, 1423 days
42.3
TCGA-G3-A3CK-01A
61 years, male, asian, stage:Stage I, alive, 585 days
42.2
TCGA-ED-A627-01A
74 years, male, white, stage:Stage I, alive, 423 days
41.9
TCGA-FV-A2QQ-01A
80 years, male, white, stage:Stage I, alive, 729 days
39.6
TCGA-ZP-A9D1-01A
56 years, female, white, stage:'--, alive, 21 days
37.6
TCGA-YA-A8S7-01A
68 years, male, white, stage:Stage IIIA, dead, 412 days
35.5
TCGA-DD-AAW0-01A
54 years, male, asian, stage:Stage I, alive, 2015 days
34.8
TCGA-2Y-A9GX-01A
68 years, male, white, stage:Stage I, alive, 2442 days
34.7
TCGA-UB-A7MD-01A
67 years, male, black or african american, stage:Stage I, dead, 52 days
34.1
TCGA-MI-A75E-01A
61 years, male, white, stage:Stage IIIC, alive, 507 days
33.9
TCGA-5R-AAAM-01A
65 years, female, white, stage:Stage II, dead, 46 days
33.6
TCGA-BC-A110-01A
51 years, female, black or african american, stage:'--, dead, 2116 days
32.7
TCGA-DD-AADM-01A
58 years, male, asian, stage:Stage II, dead, 12 days
32.4
TCGA-ES-A2HT-01A
54 years, male, black or african american, stage:Stage I, dead, 438 days
31.6
TCGA-EP-A3JL-01A
76 years, male, white, stage:Stage I, alive, 303 days
31.5
TCGA-PD-A5DF-01A
58 years, female, white, stage:Stage IIIB, dead, 639 days
30.1
TCGA-DD-A119-01A
40 years, male, asian, stage:Stage IV, dead, 223 days
29.7
TCGA-DD-AACC-01A
61 years, male, asian, stage:Stage I, dead, 1685 days
28.2
TCGA-CC-A1HT-01A
50 years, male, asian, stage:Stage IIIA, dead, 101 days
28.1
TCGA-ZP-A9CV-01A
59 years, male, white, stage:'--, dead, 1088 days
27.2
TCGA-DD-A3A3-01A
45 years, male, asian, stage:Stage I, dead, 535 days
25.9
TCGA-CC-A9FW-01A
68 years, male, asian, stage:Stage IIIA, alive, 248 days
25.7
TCGA-G3-A7M8-01A
31 years, male, asian, stage:Stage I, alive, 430 days
25.0
TCGA-ZP-A9D4-01A
64 years, female, white, stage:'--, alive, 395 days
24.7
TCGA-DD-A4NE-01A
75 years, female, white, stage:Stage IIIA, dead, 660 days
24.6
TCGA-CC-A9FS-01A
55 years, male, asian, stage:Stage II, alive, 211 days
23.7
TCGA-BC-A69I-01A
69 years, male, white, stage:Stage I, alive, 387 days
23.6
TCGA-DD-A4NQ-01A
60 years, male, white, stage:Stage II, dead, 373 days
22.7
TCGA-DD-A1EG-01A
76 years, male, white, stage:Stage I, dead, 1372 days
22.6
TCGA-DD-A73C-01A
65 years, female, white, stage:Stage IIIA, alive, 701 days
22.4
TCGA-KR-A7K7-01A
61 years, female, white, stage:Stage II, alive, 951 days
22.1
TCGA-DD-AAEG-01A
59 years, female, asian, stage:Stage I, alive, 719 days
21.5
TCGA-5R-AA1C-01A
57 years, male, white, stage:Stage II, alive, 520 days
20.9
TCGA-5C-A9VH-01A
70 years, male, white, stage:Stage I, alive, 322 days
20.5
TCGA-DD-AAVY-01A
56 years, male, asian, stage:Stage IIIA, alive, 1970 days
20.5
TCGA-BD-A3EP-01A
75 years, female, black or african american, stage:Stage I, alive, 409 days
19.9
TCGA-G3-A25Z-01A
58 years, male, asian, stage:Stage I, alive, 655 days
19.5
TCGA-DD-A4NB-01A
25 years, male, white, stage:Stage I, alive, 989 days
19.2
TCGA-ZP-A9CY-01A
66 years, female, white, stage:'--, alive, 782 days
18.1
TCGA-WJ-A86L-01A
68 years, female, white, stage:Stage I, alive, 345 days
18.0
TCGA-CC-A3MC-01A
54 years, male, asian, stage:Stage IIIA, alive, 363 days
17.9
TCGA-DD-AACI-01A
69 years, male, asian, stage:Stage II, alive, 1618 days
17.5
TCGA-ED-A97K-01A
54 years, male, asian, stage:Stage IIIA, alive, 6 days
17.2
TCGA-KR-A7K8-01A
57 years, male, stage:Stage I, alive, 906 days
17.0
TCGA-G3-A3CG-01A
80 years, male, white, stage:Stage I, alive, 673 days
16.8
TCGA-DD-A3A1-01A
65 years, male, stage:Stage IIIA, dead, 233 days
16.4
TCGA-DD-A4NR-01A
85 years, female, white, stage:Stage I, dead, 9 days
16.0
TCGA-2Y-A9H2-01A
64 years, female, white, stage:Stage I, alive, 1731 days
15.7
TCGA-CC-A8HT-01A
74 years, male, asian, stage:Stage IIIA, dead, 140 days
15.2
TCGA-EP-A3RK-01A
73 years, male, white, stage:Stage IIIA, alive, 363 days
15.0
TCGA-DD-AADR-01A
58 years, male, asian, stage:Stage I, alive, 2028 days
14.4
TCGA-DD-AAVR-01A
44 years, male, asian, stage:Stage I, alive, 2513 days
14.2
TCGA-XR-A8TG-01A
58 years, male, white, stage:Stage I, alive, 898 days
14.0
TCGA-G3-A3CI-01A
71 years, male, white, stage:Stage I, alive, 180 days
13.7
TCGA-DD-AAD8-01A
73 years, female, asian, stage:Stage I, alive, 1219 days
13.5
TCGA-DD-AACU-01A
59 years, male, asian, stage:Stage I, alive, 1567 days
13.0
TCGA-CC-5262-01A
67 years, male, asian, stage:Stage IIIC, dead, 103 days
12.3
TCGA-DD-AAVZ-01A
38 years, male, asian, stage:Stage I, alive, 1900 days
12.2
TCGA-BC-A10W-01A
50 years, male, asian, stage:'--, dead, 91 days
11.9
TCGA-DD-A1EA-01A
68 years, male, asian, stage:Stage II, alive, 2415 days
11.7
TCGA-G3-A3CJ-01A
52 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.6
TCGA-DD-A73B-01A
72 years, female, white, stage:Stage I, dead, 283 days
11.3
TCGA-2Y-A9GZ-01A
82 years, female, white, stage:Stage II, dead, 848 days
11.0
TCGA-DD-A4NG-01A
77 years, male, white, stage:Stage IIIA, dead, 802 days
10.9
TCGA-DD-AAVV-01A
56 years, male, asian, stage:Stage II, alive, 2455 days
10.9
TCGA-KR-A7K0-01A
65 years, male, white, stage:Stage I, dead, 65 days
10.8
TCGA-RC-A6M5-01A
20 years, female, white, stage:Stage IVA, alive, 15 days
10.7
TCGA-DD-AAD2-01A
66 years, male, asian, stage:Stage I, alive, 658 days
10.7
TCGA-DD-A4NI-01A
67 years, male, white, stage:Stage II, alive, 816 days
10.7
TCGA-EP-A2KC-01A
62 years, male, black or african american, stage:Stage I, dead, 19 days
10.6
TCGA-5C-AAPD-01A
61 years, male, asian, stage:Stage II, alive, 20 days
10.4
TCGA-G3-AAV3-01A
58 years, female, white, stage:Stage II, alive, 412 days
10.3
TCGA-MR-A520-01A
58 years, male, white, stage:Stage I, alive, 229 days
10.2
TCGA-ED-A7XO-01A
29 years, male, asian, stage:Stage IIIA, alive, 427 days
10.2
TCGA-NI-A4U2-01A
71 years, male, white, stage:Stage IIIA, dead, 1791 days
10.1
TCGA-DD-AAVU-01A
46 years, male, asian, stage:Stage II, alive, 2202 days
10.1
TCGA-DD-AAEI-01A
72 years, male, asian, stage:Stage I, alive, 1531 days
9.9
TCGA-DD-A1EE-01A
73 years, male, white, stage:Stage IIIA, dead, 349 days
9.7
TCGA-5R-AA1D-01A
17 years, female, white, stage:Stage IIIA, alive, 449 days
9.5
TCGA-BC-A8YO-01A
66 years, female, white, stage:Stage IIIC, alive, 562 days
9.3
TCGA-RC-A7SB-01A
53 years, male, asian, stage:Stage II, alive, 588 days
9.2
TCGA-FV-A2QR-01A
75 years, male, white, stage:Stage I, dead, 581 days
9.1
TCGA-FV-A3R2-01A
75 years, male, white, stage:Stage I, dead, 194 days
9.1
TCGA-DD-AADP-01A
45 years, male, asian, stage:Stage I, alive, 458 days
8.9
TCGA-DD-AAD5-01A
54 years, male, asian, stage:Stage I, alive, 1345 days
8.5
TCGA-DD-A11B-01A
73 years, male, white, stage:Stage I, dead, 14 days
8.3
TCGA-DD-A4NJ-01A
54 years, female, white, stage:Stage II, alive, 928 days
8.0
TCGA-DD-AACQ-01A
50 years, male, asian, stage:Stage II, dead, 432 days
7.7
TCGA-DD-AAVQ-01A
38 years, male, asian, stage:Stage I, alive, 2728 days
7.6
TCGA-DD-A4ND-01A
56 years, female, white, stage:Stage I, alive, 2746 days
7.4
TCGA-DD-AAC8-01A
72 years, male, asian, stage:Stage I, dead, 16 days
7.3
TCGA-DD-A4NH-01A
65 years, female, white, stage:Stage IIIB, alive, 917 days
7.3
TCGA-2Y-A9H1-01A
58 years, male, white, stage:Stage I, dead, 1229 days
7.2
TCGA-UB-A7MB-01A
24 years, male, white, stage:Stage II, alive, 601 days
6.7
TCGA-DD-A3A5-01A
66 years, female, white, stage:Stage III, dead, 3125 days
6.7
TCGA-HP-A5N0-01A
90 years, female, stage:'--, dead, 752 days
6.5
TCGA-DD-AAE9-01A
69 years, male, asian, stage:Stage I, alive, 722 days
6.5
TCGA-WX-AA47-01A
33 years, female, white, stage:Stage IIIA, dead, 556 days
6.3
TCGA-K7-A5RF-01A
64 years, male, white, stage:Stage I, alive, 631 days
6.3
TCGA-DD-AAE7-01A
72 years, male, asian, stage:Stage I, alive, 644 days
6.3
TCGA-ED-A7XP-01A
53 years, female, asian, stage:Stage II, alive, 400 days
6.3
TCGA-DD-A39V-01A
77 years, male, white, stage:Stage II, dead, 643 days
6.1
TCGA-DD-AACK-01A
70 years, male, asian, stage:Stage I, alive, 9 days
6.0
TCGA-BC-A3KF-01A
66 years, female, white, stage:Stage I, alive, 8 days
5.9
TCGA-ES-A2HS-01A
80 years, male, white, stage:Stage I, dead, 688 days
5.5
TCGA-UB-AA0U-01A
60 years, male, white, stage:Stage II, alive, 327 days
5.4
TCGA-G3-A25S-01A
64 years, male, white, stage:Stage I, dead, 416 days
5.1
TCGA-DD-AADI-01A
43 years, female, asian, stage:Stage I, alive, 1085 days
5.1
TCGA-DD-AACF-01A
68 years, male, asian, stage:Stage I, dead, 365 days
5.1
TCGA-DD-AAD1-01A
51 years, female, asian, stage:Stage I, alive, 564 days
5.0
TCGA-LG-A6GG-01A
79 years, female, white, stage:Stage II, alive, 387 days
4.8
TCGA-G3-AAV7-01A
38 years, male, asian, stage:Stage II, alive, 361 days
4.8
TCGA-QA-A7B7-01A
48 years, male, black or african american, stage:Stage II, alive, 94 days
4.8
TCGA-DD-AAE2-01A
51 years, male, asian, stage:Stage I, alive, 638 days
4.7
TCGA-DD-AACY-01A
61 years, male, asian, stage:Stage I, alive, 1450 days
4.7
TCGA-DD-A4NK-01A
80 years, female, white, stage:Stage IIIA, dead, 1210 days
4.5
TCGA-ZS-A9CF-01A
64 years, male, white, stage:Stage II, alive, 2412 days
4.5
TCGA-DD-A1EC-01A
20 years, female, white, stage:Stage I, alive, 602 days
4.4
TCGA-BC-A216-01A
62 years, female, white, stage:Stage IIIA, alive, 1351 days
4.4
TCGA-DD-AAEK-01A
51 years, male, asian, stage:Stage II, alive, 1067 days
4.4
TCGA-DD-AAE4-01A
49 years, female, asian, stage:Stage I, alive, 608 days
4.3
TCGA-BW-A5NO-01A
50 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.3
TCGA-DD-AADL-01A
58 years, male, asian, stage:Stage I, alive, 636 days
4.3
TCGA-2Y-A9H6-01A
68 years, female, white, stage:Stage I, alive, 357 days
4.2
TCGA-DD-A1EL-01A
23 years, male, black or african american, stage:Stage II, dead, 415 days
4.1
TCGA-GJ-A6C0-01A
75 years, female, white, stage:Stage II, dead, 31 days
4.1
TCGA-CC-5264-01A
71 years, male, asian, stage:Stage IIIA, dead, 102 days
4.1
TCGA-DD-AAVW-01A
35 years, male, asian, stage:Stage I, alive, 2317 days
3.7
TCGA-DD-A1EI-01A
46 years, male, asian, stage:Stage I, alive, 183 days
3.7
TCGA-GJ-A9DB-01A
68 years, male, white, stage:Stage I, dead, 67 days
3.5
TCGA-XR-A8TD-01A
49 years, female, white, stage:Stage IIIB, alive, 1030 days
3.5
TCGA-G3-A25T-01A
45 years, female, white, stage:Stage IIIA, alive, 1553 days
3.4
TCGA-T1-A6J8-01A
68 years, male, white, stage:'--, alive, 23 days
3.4
TCGA-WQ-A9G7-01A
71 years, female, white, stage:'--, alive, 30 days
3.2
TCGA-2Y-A9H9-01A
70 years, male, white, stage:Stage I, alive, 697 days
3.0
TCGA-UB-A7ME-01A
51 years, male, asian, stage:Stage I, alive, 486 days
3.0
TCGA-BC-A10U-01A
69 years, male, white, stage:'--, dead, 837 days
2.9
TCGA-4R-AA8I-01A
66 years, male, white, stage:Stage II, dead, 262 days
2.8
TCGA-DD-AACL-01A
66 years, female, asian, stage:Stage I, dead, 107 days
2.7
TCGA-G3-A25Y-01A
52 years, female, asian, stage:Stage I, dead, 452 days
2.7
TCGA-DD-AAE0-01A
45 years, female, asian, stage:Stage IIIA, alive, 555 days
2.7
TCGA-DD-A11D-01A
57 years, female, white, stage:Stage I, dead, 1560 days
2.7
TCGA-DD-AADF-01A
64 years, female, asian, stage:Stage I, dead, 115 days
2.6
TCGA-K7-AAU7-01A
61 years, male, white, stage:Stage II, alive, 359 days
2.6
TCGA-DD-A3A2-01A
76 years, female, white, stage:Stage I, dead, 2131 days
2.5
TCGA-DD-AACJ-01A
75 years, male, asian, stage:Stage II, alive, 2102 days
2.4
TCGA-ZP-A9D2-01A
51 years, male, white, stage:'--, dead, 765 days
2.4
TCGA-2Y-A9HA-01A
70 years, male, white, stage:Stage II, dead, 36 days
2.4
TCGA-DD-A73A-01A
71 years, male, white, stage:Stage I, alive, 728 days
2.3
TCGA-DD-AAVP-01A
48 years, male, asian, stage:Stage I, alive, 2752 days
2.3
TCGA-BC-A10X-01A
52 years, female, white, stage:Stage IIIA, dead, 770 days
2.3
TCGA-G3-AAUZ-01A
48 years, male, stage:Stage I, alive, 480 days
2.3
TCGA-DD-AACN-01A
32 years, male, asian, stage:Stage I, alive, 1302 days
2.3
TCGA-DD-A73F-01A
77 years, female, white, stage:Stage I, alive, 1085 days
2.1
TCGA-DD-AADA-01A
66 years, female, asian, stage:Stage I, alive, 1233 days
2.0
TCGA-FV-A4ZQ-01A
52 years, male, white, stage:Stage I, alive, 12 days
2.0
TCGA-DD-A4NA-01A
67 years, female, white, stage:Stage IIIC, alive, 1008 days
1.9
TCGA-DD-AACP-01A
64 years, male, asian, stage:Stage I, alive, 415 days
1.9
TCGA-DD-A116-01A
68 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.9
TCGA-2Y-A9H8-01A
85 years, female, white, stage:'--, dead, 633 days
1.9
TCGA-WX-AA46-01A
61 years, male, white, stage:Stage II, alive, 756 days
1.8
TCGA-MR-A8JO-01A
34 years, male, white, stage:Stage I, alive, 330 days
1.8
TCGA-G3-A25U-01A
63 years, female, asian, stage:Stage I, alive, 1636 days
1.7
TCGA-ZP-A9CZ-01A
72 years, male, asian, stage:'--, alive, 706 days
1.7
TCGA-ED-A82E-01A
60 years, female, asian, stage:Stage IIIA, alive, 408 days
1.7
TCGA-ED-A8O6-01A
50 years, female, asian, stage:Stage IIIA, dead, 56 days
1.7
TCGA-CC-A5UC-01A
63 years, male, asian, stage:Stage IIIA, dead, 347 days
1.7
TCGA-UB-AA0V-01A
69 years, female, white, stage:Stage I, alive, 314 days
1.7
TCGA-ZS-A9CE-01A
79 years, female, white, stage:Stage II, alive, 1241 days
1.6
TCGA-DD-AAEH-01A
73 years, male, asian, stage:Stage I, alive, 784 days
1.6
TCGA-BC-A3KG-01A
68 years, female, white, stage:Stage II, alive, 680 days
1.5
TCGA-ZP-A9D0-01A
67 years, female, black or african american, stage:'--, alive, 1091 days
1.5
TCGA-DD-A115-01A
53 years, male, white, stage:Stage IIIA, dead, 2542 days
1.5
TCGA-ZS-A9CG-01A
55 years, male, white, stage:Stage II, alive, 341 days
1.5
TCGA-MI-A75I-01A
61 years, male, black or african american, stage:'--, alive, 630 days
1.4
TCGA-CC-A3MB-01A
36 years, male, asian, stage:Stage IIIA, dead, 315 days
1.4
TCGA-DD-AAE1-01A
52 years, male, asian, stage:Stage I, alive, 552 days
1.3
TCGA-DD-AADS-01A
63 years, male, asian, stage:Stage I, alive, 474 days
1.3
TCGA-2Y-A9H5-01A
59 years, female, white, stage:Stage I, dead, 555 days
1.3
TCGA-ED-A66X-01A
35 years, male, asian, stage:Stage IIIA, alive, 406 days
1.3
TCGA-WX-AA44-01A
64 years, female, white, stage:Stage I, alive, 615 days
1.3
TCGA-ED-A4XI-01A
58 years, male, asian, stage:Stage II, alive, 819 days
1.3
TCGA-FV-A496-01A
84 years, female, white, stage:Stage I, alive, 10 days
1.3
TCGA-LG-A9QC-01A
48 years, male, white, stage:Stage I, alive, 425 days
1.2
TCGA-FV-A23B-01A
70 years, female, white, stage:Stage II, dead, 1852 days
1.2
TCGA-2Y-A9H0-01A
49 years, male, white, stage:Stage IIIA, alive, 3675 days
1.2
TCGA-2Y-A9GS-01A
58 years, male, white, stage:'--, dead, 724 days
1.2
TCGA-DD-AAD0-01A
73 years, female, asian, stage:Stage I, alive, 137 days
1.2
TCGA-DD-A4NV-01A
61 years, male, white, stage:Stage IIIA, alive, 2398 days
1.1
TCGA-UB-A7MC-01A
59 years, male, white, stage:Stage IIIA, alive, 500 days
1.1
TCGA-CC-5259-01A
60 years, female, asian, stage:Stage IIIC, alive, 250 days
1.1
TCGA-CC-A7IL-01A
61 years, male, asian, stage:Stage IIIA, dead, 278 days
1.1
TCGA-DD-A39X-01A
78 years, female, white, stage:Stage I, dead, 1694 days
1.1
TCGA-CC-A8HS-01A
18 years, male, asian, stage:Stage IIIC, dead, 300 days
1.1
TCGA-DD-AAW3-01A
69 years, male, asian, stage:Stage I, alive, 1633 days
1.1
TCGA-DD-AACV-01A
53 years, male, asian, stage:Stage I, alive, 1531 days
1.1
TCGA-DD-AACG-01A
52 years, male, asian, stage:Stage II, dead, 469 days
1.0
TCGA-DD-AACZ-01A
63 years, female, asian, stage:Stage I, dead, 171 days
1.0
TCGA-DD-AAE6-01A
59 years, female, asian, stage:Stage I, alive, 141 days
1.0
TCGA-CC-A5UD-01A
45 years, male, asian, stage:Stage IIIA, dead, 304 days
1.0
TCGA-XR-A8TC-01A
43 years, female, white, stage:Stage I, alive, 1339 days
1.0
TCGA-DD-A1EF-01A
57 years, female, white, stage:Stage I, dead, 394 days
1.0
TCGA-CC-A8HV-01A
51 years, female, asian, stage:Stage II, dead, 279 days
1.0
TCGA-G3-A5SL-01A
70 years, male, white, stage:Stage II, alive, 621 days
1.0
TCGA-RG-A7D4-01A
69 years, male, black or african american, stage:Stage II, alive, 1098 days
0.9
TCGA-RC-A7SF-01A
66 years, male, asian, stage:Stage I, alive, 579 days
0.9
TCGA-DD-A1EB-01A
72 years, female, stage:Stage I, alive, 2017 days
0.9
TCGA-KR-A7K2-01A
64 years, male, white, stage:Stage I, alive, 829 days
0.9
TCGA-DD-A4NN-01A
56 years, female, white, stage:Stage I, dead, 899 days
0.9
TCGA-DD-AAVS-01A
56 years, male, asian, stage:Stage I, alive, 1823 days
0.9
TCGA-DD-AAEA-01A
65 years, male, asian, stage:Stage I, alive, 575 days
0.8
TCGA-DD-AACW-01A
43 years, male, asian, stage:Stage I, alive, 1424 days
0.8
TCGA-BC-A10Y-01A
76 years, male, white, stage:'--, dead, 711 days
0.8
TCGA-DD-A73D-01A
68 years, female, white, stage:Stage II, alive, 693 days
0.8
TCGA-DD-A4NS-01A
61 years, female, white, stage:Stage I, dead, 2456 days
0.8
TCGA-G3-A7M5-01A
76 years, male, asian, stage:Stage I, alive, 447 days
0.8
TCGA-DD-AACS-01A
39 years, male, asian, stage:Stage I, alive, 1804 days
0.8
TCGA-CC-A8HU-01A
39 years, female, asian, stage:Stage IIIA, dead, 344 days
0.8
TCGA-DD-AACH-01A
69 years, male, asian, stage:Stage II, dead, 195 days
0.8
TCGA-DD-AADB-01A
51 years, male, asian, stage:Stage I, alive, 1242 days
0.7
TCGA-BC-A217-01A
75 years, female, white, stage:Stage II, dead, 1397 days
0.7
TCGA-BC-A10Z-01A
62 years, female, white, stage:Stage I, dead, 34 days
0.7
TCGA-DD-AADO-01A
55 years, male, asian, stage:Stage I, alive, 453 days
0.7
TCGA-2Y-A9HB-01A
66 years, male, stage:Stage I, alive, 260 days
0.7
TCGA-DD-A3A7-01A
67 years, male, stage:Stage IIIB, dead, 419 days
0.6
TCGA-DD-AADV-01A
50 years, male, asian, stage:Stage I, alive, 574 days
0.6
TCGA-3K-AAZ8-01A
65 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.6
TCGA-MI-A75C-01A
64 years, male, white, stage:Stage I, alive, 291 days
0.6
TCGA-2Y-A9H7-01A
81 years, female, white, stage:Stage I, alive, 1168 days
0.6
TCGA-G3-AAV0-01A
58 years, male, asian, stage:Stage I, alive, 476 days
0.6
TCGA-DD-A4NF-01A
72 years, male, white, stage:Stage I, alive, 942 days
0.6
TCGA-DD-AA3A-01A
81 years, female, white, stage:Stage I, dead, 410 days
0.5
TCGA-BC-A10R-01A
66 years, female, white, stage:'--, dead, 308 days
0.5
TCGA-BD-A2L6-01A
69 years, male, white, stage:'--, alive, 1363 days
0.5
TCGA-EP-A2KB-01A
46 years, female, white, stage:Stage I, dead, 596 days
0.5
TCGA-NI-A8LF-01A
74 years, male, white, stage:Stage I, alive, 799 days
0.5
TCGA-DD-AAD6-01A
66 years, male, asian, stage:Stage IIIA, alive, 672 days
0.5
TCGA-DD-A3A8-01A
75 years, male, white, stage:Stage II, dead, 11 days
0.5
TCGA-FV-A495-01A
51 years, female, white, stage:Stage II, alive, 1 days
0.5
TCGA-2Y-A9GU-01A
55 years, female, white, stage:Stage I, alive, 1939 days
0.4
TCGA-DD-AAEE-01A
55 years, male, asian, stage:Stage I, alive, 810 days
0.4
TCGA-EP-A12J-01A
62 years, male, black or african american, stage:Stage I, alive, 570 days
0.4
TCGA-DD-AACO-01A
40 years, male, asian, stage:Stage I, alive, 1876 days
0.4
TCGA-2Y-A9H4-01A
68 years, male, black or african american, stage:Stage I, alive, 1452 days
0.4
TCGA-G3-A3CH-01A
53 years, male, asian, stage:Stage IIIA, alive, 780 days
0.4
TCGA-CC-A7IE-01A
57 years, male, asian, stage:Stage IIIA, dead, 217 days
0.4
TCGA-MI-A75H-01A
77 years, male, white, stage:'--, alive, 747 days
0.4
TCGA-DD-AACE-01A
62 years, male, asian, stage:Stage I, alive, 2184 days
0.4
TCGA-DD-AAW1-01A
55 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.4
TCGA-UB-A7MF-01A
56 years, male, white, stage:Stage IIIA, dead, 214 days
0.4
TCGA-DD-AAD3-01A
43 years, male, asian, stage:Stage I, alive, 1295 days
0.4
TCGA-DD-AAEB-01A
60 years, male, asian, stage:Stage I, alive, 478 days
0.4
TCGA-DD-AACX-01A
66 years, male, asian, stage:Stage II, alive, 170 days
0.4
TCGA-G3-A7M6-01A
60 years, female, white, stage:Stage I, alive, 632 days
0.4
TCGA-CC-A3M9-01A
45 years, male, asian, stage:Stage IIIA, dead, 300 days
0.4
TCGA-BC-A10T-01A
76 years, male, white, stage:'--, dead, 837 days
0.4
TCGA-CC-A7IF-01A
59 years, male, asian, stage:Stage IIIA, dead, 649 days
0.3
TCGA-DD-A3A4-01A
37 years, male, white, stage:Stage IIIA, dead, 612 days
0.3
TCGA-ED-A8O5-01A
59 years, female, asian, stage:Stage IIIA, alive, 406 days
0.3
TCGA-DD-A73G-01A
73 years, female, white, stage:Stage I, alive, 3478 days
0.3
TCGA-DD-A3A9-01A
64 years, female, white, stage:Stage IVB, dead, 931 days
0.3
TCGA-DD-AADW-01A
48 years, male, asian, stage:Stage I, alive, 587 days
0.3
TCGA-DD-AAED-01A
51 years, male, asian, stage:Stage I, alive, 763 days
0.3
TCGA-2Y-A9GY-01A
64 years, female, white, stage:Stage II, dead, 757 days
0.3
TCGA-RC-A7S9-01A
47 years, female, asian, stage:Stage I, alive, 640 days
0.3
TCGA-BC-A69H-01A
64 years, male, white, stage:Stage II, alive, 444 days
0.3
TCGA-RC-A6M4-01A
74 years, female, white, stage:Stage IIIA, alive, 22 days
0.3
TCGA-FV-A3R3-01A
38 years, female, white, stage:Stage I, dead, 366 days
0.2
TCGA-CC-5263-01A
35 years, male, asian, stage:Stage IIIA, dead, 129 days
0.2
TCGA-G3-A7M9-01A
70 years, male, white, stage:Stage IIIB, dead, 56 days
0.2
TCGA-G3-AAV6-01A
53 years, female, white, stage:Stage IIIA, dead, 65 days
0.2
TCGA-RC-A6M6-01A
75 years, male, white, stage:Stage II, alive, 9 days
0.2
TCGA-ED-A5KG-01A
60 years, female, asian, stage:Stage II, alive, 854 days
0.2
TCGA-DD-AAE3-01A
50 years, male, asian, stage:Stage I, alive, 566 days
0.2
TCGA-DD-AADC-01A
53 years, male, asian, stage:Stage I, dead, 425 days
0.2
TCGA-G3-A6UC-01A
65 years, male, white, stage:Stage IIIB, alive, 671 days
0.2
TCGA-CC-A7IH-01A
58 years, male, asian, stage:Stage IIIA, alive, 365 days
0.2
TCGA-DD-AADN-01A
59 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-G3-A5SI-01A
44 years, male, asian, stage:Stage II, dead, 768 days
0.2
TCGA-XR-A8TE-01A
16 years, male, white, stage:Stage IIIA, alive, 925 days
0.2
TCGA-DD-A1EH-01A
23 years, male, white, stage:Stage III, alive, 1495 days
0.2
TCGA-G3-AAV2-01A
50 years, male, white, stage:Stage I, alive, 372 days
0.2
TCGA-BC-A112-01A
80 years, male, white, stage:'--, dead, 153 days
0.2
TCGA-FV-A3I1-01A
81 years, female, white, stage:Stage II, dead, 247 days
0.2
TCGA-CC-A3MA-01A
61 years, male, asian, stage:Stage IIIA, dead, 303 days
0.2
TCGA-G3-A25X-01A
73 years, male, asian, stage:Stage II, alive, 1779 days
0.2
TCGA-MI-A75G-01A
63 years, male, white, stage:Stage II, alive, 698 days
0.2
TCGA-CC-5258-01A
48 years, male, asian, stage:Stage II, dead, 129 days
0.2
TCGA-5C-A9VG-01A
58 years, male, white, stage:Stage II, alive, 328 days
0.2
TCGA-DD-A113-01A
55 years, female, white, stage:Stage II, alive, 2425 days
0.2
TCGA-RC-A7SH-01A
42 years, male, asian, stage:Stage II, alive, 468 days
0.1
TCGA-RC-A7SK-01A
59 years, male, asian, stage:Stage I, alive, 472 days
0.1
TCGA-CC-A7IG-01A
47 years, male, asian, stage:Stage II, dead, 299 days
0.1
TCGA-DD-A39Y-01A
67 years, male, asian, stage:Stage I, dead, 171 days
0.1
TCGA-DD-A39Z-01A
43 years, female, stage:Stage II, dead, 601 days
0.1
TCGA-EP-A2KA-01A
52 years, female, white, stage:Stage IIIA, dead, 627 days
0.1
TCGA-DD-AACA-01A
65 years, male, asian, stage:Stage I, alive, 2301 days
0.0
TCGA-DD-AACB-01A
74 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-DD-AADJ-01A
70 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-DD-A3A6-01A
72 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-A118-01A
77 years, female, white, stage:Stage II, alive, 3437 days
0.0
TCGA-DD-A73E-01A
66 years, male, white, stage:Stage I, alive, 44 days
0.0
TCGA-ED-A7PZ-01A
61 years, male, asian, stage:Stage II, alive, 6 days
0.0
TCGA-CC-5261-01A
44 years, male, asian, stage:Stage II, dead, 97 days
0.0
TCGA-CC-5260-01A
61 years, female, asian, stage:Stage IIIC, dead, 87 days
0.0
TCGA-G3-AAV4-01A
83 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-FV-A4ZP-01A
78 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-XR-A8TF-01A
74 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-CC-A123-01A
24 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-CC-A7IJ-01A
56 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-DD-AADD-01A
51 years, male, asian, stage:Stage I, alive, 1231 days
0.0
TCGA-EP-A26S-01A
70 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-ED-A7PX-01A
48 years, female, asian, stage:Stage II, alive, 6 days
0.0
TCGA-2Y-A9H3-01A
45 years, male, white, stage:Stage II, alive, 1516 days
0.0
TCGA-DD-AADY-01A
55 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-DD-AADU-01A
60 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-BC-A5W4-01A
69 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-DD-A114-01A
42 years, male, black or african american, stage:Stage II, dead, 1149 days
0.0
TCGA-CC-A7II-01A
54 years, male, asian, stage:Stage IIIA, alive, 399 days
0.0
TCGA-ED-A7PY-01A
20 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-G3-AAV1-01A
51 years, male, asian, stage:Stage IIIC, dead, 359 days
0.0
TCGA-UB-A7MA-01A
62 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-G3-AAV5-01A
67 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-DD-AAW2-01A
69 years, male, asian, stage:Stage I, alive, 1855 days
0.0
TCGA-DD-AADG-01A
70 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.0
TCGA-G3-A5SJ-01A
59 years, male, white, stage:Stage I, alive, 698 days
0.0
TCGA-BC-A10Q-01A
72 years, female, white, stage:'--, dead, 1135 days
0.0
TCGA-DD-A39W-01A
29 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-FV-A3I0-01A
76 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-ED-A66Y-01A
51 years, female, asian, stage:Stage IIIA, dead, 296 days
0.0
TCGA-CC-A5UE-01A
48 years, male, asian, stage:Stage IIIB, dead, 272 days
0.0
TCGA-CC-A7IK-01A
59 years, male, asian, stage:Stage IIIA, dead, 262 days
0.0
TCGA-DD-A1EJ-01A
71 years, female, white, stage:Stage IIIC, dead, 1005 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
327
Tumor
1.7
217
Tumor
1.6
218
Normal
1.5
145
Tumor
1.5
286
Normal
1.4
937
Tumor
1.4
396
Normal
1.3
851
Tumor
1.2
526
Normal
1.2
195
Tumor
1.2
981
Tumor
1.2
391
Tumor
1.1
422
Normal
1.1
392
Normal
1.1
857
Tumor
1.0
353
Tumor
1.0
368
Normal
1.0
395
Tumor
1.0
113
Tumor
0.9
665
Tumor
0.9
187
Tumor
0.9
557
Tumor
0.8
191
Tumor
0.8
728
Normal
0.8
713
Tumor
0.8
228
Normal
0.8
615
Tumor
0.7
863
Tumor
0.7
223
Tumor
0.7
446
Normal
0.7
642
Normal
0.7
1027
Tumor
0.7
627
Tumor
0.7
343
Tumor
0.6
686
Normal
0.6
352
Normal
0.6
672
Normal
0.6
141
Tumor
0.6
513
Tumor
0.6
558
Normal
0.5
671
Tumor
0.5
1015
Tumor
0.5
491
Tumor
0.5
536
Normal
0.5
498
Normal
0.5
1026
Normal
0.5
192
Normal
0.4
421
Tumor
0.4
523
Tumor
0.4
365
Tumor
0.4
685
Tumor
0.4
723
Tumor
0.4
877
Tumor
0.3
696
Normal
0.3
257
Tumor
0.3
663
Tumor
0.3
525
Tumor
0.3
514
Normal
0.3
467
Tumor
0.3
261
Tumor
0.2
866
Normal
0.2
488
Normal
0.2
1044
Normal
0.2
953
Tumor
0.2
344
Normal
0.2
375
Tumor
0.2
938
Normal
0.2
224
Normal
0.2
461
Tumor
0.2
862
Normal
0.2
568
Normal
0.2
221
Tumor
0.2
635
Tumor
0.2
815
Tumor
0.1
563
Tumor
0.1
1016
Normal
0.1
722
Normal
0.1
487
Tumor
0.1
755
Tumor
0.1
1043
Tumor
0.1
313
Tumor
0.1
636
Normal
0.1
222
Normal
0.1
727
Tumor
0.1
492
Normal
0.1
816
Normal
0.1
455
Tumor
0.0
957
Tumor
0.0
618
Normal
0.0
964
Normal
0.0
297
Tumor
0.0
1028
Normal
0.0
426
Normal
0.0
574
Normal
0.0
533
Tumor
0.0
818
Normal
0.0
858
Normal
0.0
968
Normal
0.0
285
Tumor
0.0
982
Normal
0.0
666
Normal
0.0
354
Normal
0.0
515
Tumor
0.0
444
Normal
0.0
351
Tumor
0.0
524
Normal
0.0
413
Tumor
0.0
376
Normal
-0.1
873
Tumor
-0.1
721
Tumor
-0.1
616
Normal
-0.1
628
Normal
-0.1
617
Tumor
-0.1
494
Normal
-0.1
535
Tumor
-0.1
214
Normal
-0.1
428
Normal
-0.1
482
Normal
-0.1
984
Normal
-0.1
414
Normal
-0.1
342
Normal
-0.1
926
Normal
-0.1
975
Tumor
-0.1
481
Tumor
-0.1
1025
Tumor
-0.1
213
Tumor
-0.2
196
Normal
-0.2
148
Normal
-0.2
232
Normal
-0.2
967
Tumor
-0.2
664
Normal
-0.2
714
Normal
-0.2
328
Normal
-0.2
262
Normal
-0.2
464
Normal
-0.2
1045
Tumor
-0.2
824
Normal
-0.2
423
Tumor
-0.2
528
Normal
-0.2
958
Normal
-0.2
125
Tumor
-0.2
868
Normal
-0.2
778
Normal
-0.2
978
Normal
-0.2
952
Normal
-0.2
554
Normal
-0.2
823
Tumor
-0.2
146
Normal
-0.2
331
Tumor
-0.2
227
Tumor
-0.2
553
Tumor
-0.2
538
Normal
-0.3
1014
Normal
-0.3
474
Normal
-0.3
386
Normal
-0.3
918
Normal
-0.3
1046
Normal
-0.3
518
Normal
-0.3
742
Normal
-0.3
915
Tumor
-0.3
852
Normal
-0.3
468
Normal
-0.3
564
Normal
-0.3
641
Tumor
-0.3
332
Normal
-0.3
744
Normal
-0.3
447
Tumor
-0.3
867
Tumor
-0.3
874
Normal
-0.3
357
Tumor
-0.3
366
Normal
-0.3
471
Tumor
-0.3
546
Normal
-0.3
466
Normal
-0.4
456
Normal
-0.4
567
Tumor
-0.4
424
Normal
-0.4
924
Normal
-0.4
966
Normal
-0.4
913
Tumor
-0.4
954
Normal
-0.4
355
Tumor
-0.4
737
Tumor
-0.4
142
Normal
-0.4
741
Tumor
-0.4
138
Normal
-0.4
358
Normal
-0.4
517
Tumor
-0.4
861
Tumor
-0.4
314
Normal
-0.4
186
Normal
-0.4
785
Tumor
-0.4
963
Tumor
-0.4
662
Normal
-0.4
976
Normal
-0.4
298
Normal
-0.4
572
Normal
-0.4
738
Normal
-0.4
364
Normal
-0.5
716
Normal
-0.5
188
Normal
-0.5
432
Normal
-0.5
545
Tumor
-0.5
258
Normal
-0.5
393
Tumor
-0.5
884
Normal
-0.5
112
Tumor
-0.5
388
Normal
-0.5
573
Tumor
-0.5
137
Tumor
-0.5
448
Normal
-0.5
956
Normal
-0.5
648
Normal
-0.5
917
Tumor
-0.5
436
Normal
-0.5
451
Tumor
-0.5
465
Tumor
-0.5
443
Tumor
-0.5
462
Normal
-0.5
977
Tumor
-0.5
111
Normal
-0.5
114
Normal
-0.5
951
Tumor
-0.5
425
Tumor
-0.5
472
Normal
-0.5
813
Tumor
-0.5
124
Normal
-0.5
416
Normal
-0.5
817
Tumor
-0.5
445
Tumor
-0.5
922
Normal
-0.5
944
Normal
-0.5
312
Normal
-0.5
341
Tumor
-0.5
267
Tumor
-0.6
537
Tumor
-0.6
647
Tumor
-0.6
916
Normal
-0.6
384
Normal
-0.6
983
Tumor
-0.6
724
Normal
-0.6
126
Normal
-0.6
433
Tumor
-0.6
147
Tumor
-0.6
943
Tumor
-0.6
697
Tumor
-0.6
883
Tumor
-0.6
136
Normal
-0.6
367
Tumor
-0.6
1022
Normal
-0.6
864
Normal
-0.6
777
Tumor
-0.6
132
Normal
-0.6
356
Normal
-0.6
363
Tumor
-0.6
955
Tumor
-0.6
212
Normal
-0.6
412
Normal
-0.6
497
Tumor
-0.6
394
Normal
-0.6
478
Normal
-0.6
911
Tumor
-0.6
452
Normal
-0.6
695
Tumor
-0.7
162
Normal
-0.7
477
Tumor
-0.7
172
Normal
-0.7
965
Tumor
-0.7
311
Tumor
-0.7
923
Tumor
-0.7
534
Normal
-0.7
387
Tumor
-0.7
435
Tumor
-0.7
411
Tumor
-0.7
284
Normal
-0.7
283
Tumor
-0.7
161
Tumor
-0.7
185
Tumor
-0.7
484
Normal
-0.7
925
Tumor
-0.8
361
Tumor
-0.8
277
Tumor
-0.8
698
Normal
-0.8
171
Tumor
-0.8
431
Tumor
-0.8
571
Tumor
-0.8
463
Tumor
-0.8
415
Tumor
-0.8
516
Normal
-0.8
527
Tumor
-0.8
385
Tumor
-0.8
1013
Tumor
-0.8
278
Normal
-0.8
786
Normal
-0.9
865
Tumor
-0.9
483
Tumor
-0.9
135
Tumor
-0.9
914
Normal
-0.9
362
Normal
-0.9
745
Tumor
-0.9
231
Tumor
-0.9
882
Normal
-0.9
434
Normal
-0.9
1042
Normal
-1.0
383
Tumor
-1.0
268
Normal
-1.0
128
Normal
-1.0
743
Tumor
-1.0
131
Tumor
-1.0
912
Normal
-1.1
715
Tumor
-1.1
473
Tumor
-1.1
272
Normal
-1.1
814
Normal
-1.1
1021
Tumor
-1.1
746
Normal
-1.1
1041
Tumor
-1.1
271
Tumor
-1.1
427
Tumor
-1.2
921
Tumor
-1.2
881
Tumor
-1.2
123
Tumor
-1.2
127
Tumor
-1.2
756
Normal
-1.2
211
Tumor
-1.3
493
Tumor
-1.3
878
Normal
-1.3
1032
Normal
-1.4
661
Tumor
-1.9
1031
Tumor
-2.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
