We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MPV17L2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
40.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
34.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
32.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
31.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
30.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
29.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
27.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
25.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
23.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
21.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
21.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
20.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
20.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
20.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
19.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
19.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
18.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
17.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
17.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
17.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
16.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MPV17L2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.3
Number of samples
231
Samples
Sample
Description
TPM
DO48725
0 years, male, NA, stage:1, alive, 780 days
77.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
55.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
43.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
34.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
30.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
28.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
27.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
26.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
26.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
21.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
19.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
18.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
17.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
16.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
5.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
231
Tumor
1.7
513
Tumor
1.4
361
Tumor
1.3
563
Tumor
1.3
967
Tumor
1.2
132
Normal
1.2
635
Tumor
1.2
627
Tumor
1.2
461
Tumor
1.1
353
Tumor
1.0
571
Tumor
1.0
665
Tumor
0.9
615
Tumor
0.9
365
Tumor
0.9
1027
Tumor
0.8
161
Tumor
0.8
567
Tumor
0.8
537
Tumor
0.7
391
Tumor
0.7
923
Tumor
0.7
227
Tumor
0.7
435
Tumor
0.6
351
Tumor
0.6
257
Tumor
0.6
138
Normal
0.6
171
Tumor
0.6
258
Normal
0.6
423
Tumor
0.5
277
Tumor
0.5
671
Tumor
0.5
515
Tumor
0.5
136
Normal
0.5
937
Tumor
0.5
436
Normal
0.5
186
Normal
0.5
463
Tumor
0.5
395
Tumor
0.4
462
Normal
0.4
267
Tumor
0.4
953
Tumor
0.4
146
Normal
0.4
172
Normal
0.4
223
Tumor
0.4
327
Tumor
0.4
375
Tumor
0.4
1032
Normal
0.4
465
Tumor
0.4
756
Normal
0.4
148
Normal
0.4
285
Tumor
0.4
314
Normal
0.4
262
Normal
0.4
666
Normal
0.4
648
Normal
0.3
123
Tumor
0.3
785
Tumor
0.3
568
Normal
0.3
387
Tumor
0.3
411
Tumor
0.3
786
Normal
0.3
232
Normal
0.3
873
Tumor
0.3
162
Normal
0.3
385
Tumor
0.3
664
Normal
0.3
443
Tumor
0.3
328
Normal
0.2
188
Normal
0.2
713
Tumor
0.2
642
Normal
0.2
145
Tumor
0.2
913
Tumor
0.2
218
Normal
0.2
618
Normal
0.2
755
Tumor
0.2
137
Tumor
0.2
858
Normal
0.2
383
Tumor
0.2
777
Tumor
0.2
925
Tumor
0.2
356
Normal
0.2
557
Tumor
0.2
393
Tumor
0.2
814
Normal
0.2
672
Normal
0.2
297
Tumor
0.2
965
Tumor
0.2
452
Normal
0.1
647
Tumor
0.1
217
Tumor
0.1
358
Normal
0.1
213
Tumor
0.1
272
Normal
0.1
574
Normal
0.1
911
Tumor
0.1
222
Normal
0.1
636
Normal
0.1
663
Tumor
0.1
368
Normal
0.1
432
Normal
0.1
367
Tumor
0.1
445
Tumor
0.1
214
Normal
0.1
392
Normal
0.1
352
Normal
0.1
394
Normal
0.1
778
Normal
0.1
446
Normal
0.1
286
Normal
0.1
922
Normal
0.1
714
Normal
0.1
564
Normal
0.1
191
Tumor
0.1
862
Normal
0.1
525
Tumor
0.1
482
Normal
0.1
662
Normal
0.1
427
Tumor
0.1
865
Tumor
0.1
414
Normal
0.1
883
Tumor
0.1
192
Normal
0.1
185
Tumor
0.1
746
Normal
0.0
127
Tumor
0.0
868
Normal
0.0
481
Tumor
0.0
874
Normal
0.0
553
Tumor
0.0
661
Tumor
0.0
526
Normal
0.0
524
Normal
0.0
228
Normal
0.0
357
Tumor
0.0
195
Tumor
0.0
424
Normal
0.0
141
Tumor
0.0
456
Normal
0.0
464
Normal
0.0
573
Tumor
0.0
224
Normal
0.0
422
Normal
0.0
884
Normal
0.0
534
Normal
0.0
616
Normal
0.0
722
Normal
0.0
518
Normal
0.0
451
Tumor
0.0
915
Tumor
0.0
212
Normal
0.0
527
Tumor
0.0
724
Normal
0.0
468
Normal
0.0
863
Tumor
0.0
142
Normal
0.0
341
Tumor
0.0
824
Normal
0.0
813
Tumor
0.0
428
Normal
0.0
538
Normal
0.0
528
Normal
0.0
617
Tumor
0.0
366
Normal
0.0
388
Normal
0.0
964
Normal
0.0
466
Normal
0.0
955
Tumor
-0.1
376
Normal
-0.1
818
Normal
-0.1
431
Tumor
-0.1
628
Normal
-0.1
474
Normal
-0.1
187
Tumor
-0.1
147
Tumor
-0.1
926
Normal
-0.1
416
Normal
-0.1
196
Normal
-0.1
421
Tumor
-0.1
558
Normal
-0.1
221
Tumor
-0.1
867
Tumor
-0.1
467
Tumor
-0.1
278
Normal
-0.1
434
Normal
-0.1
745
Tumor
-0.1
271
Tumor
-0.1
112
Tumor
-0.1
864
Normal
-0.1
444
Normal
-0.1
113
Tumor
-0.1
572
Normal
-0.1
413
Tumor
-0.1
126
Normal
-0.1
472
Normal
-0.1
384
Normal
-0.1
313
Tumor
-0.1
344
Normal
-0.1
916
Normal
-0.1
261
Tumor
-0.1
852
Normal
-0.1
426
Normal
-0.2
362
Normal
-0.2
298
Normal
-0.2
958
Normal
-0.2
268
Normal
-0.2
546
Normal
-0.2
918
Normal
-0.2
861
Tumor
-0.2
386
Normal
-0.2
882
Normal
-0.2
976
Normal
-0.2
433
Tumor
-0.2
396
Normal
-0.2
641
Tumor
-0.2
741
Tumor
-0.2
114
Normal
-0.2
135
Tumor
-0.2
284
Normal
-0.2
514
Normal
-0.3
554
Normal
-0.3
533
Tumor
-0.3
943
Tumor
-0.3
912
Normal
-0.3
354
Normal
-0.3
412
Normal
-0.3
477
Tumor
-0.3
921
Tumor
-0.3
956
Normal
-0.3
924
Normal
-0.3
823
Tumor
-0.3
415
Tumor
-0.3
364
Normal
-0.3
966
Normal
-0.3
816
Normal
-0.3
124
Normal
-0.3
721
Tumor
-0.3
716
Normal
-0.3
917
Tumor
-0.4
1022
Normal
-0.4
111
Normal
-0.4
968
Normal
-0.4
342
Normal
-0.4
866
Normal
-0.4
355
Tumor
-0.4
957
Tumor
-0.4
696
Normal
-0.4
914
Normal
-0.4
131
Tumor
-0.4
742
Normal
-0.4
728
Normal
-0.4
283
Tumor
-0.4
517
Tumor
-0.4
128
Normal
-0.5
1028
Normal
-0.5
723
Tumor
-0.5
455
Tumor
-0.5
963
Tumor
-0.5
125
Tumor
-0.5
363
Tumor
-0.5
343
Tumor
-0.5
311
Tumor
-0.5
478
Normal
-0.5
332
Normal
-0.5
312
Normal
-0.5
425
Tumor
-0.5
944
Normal
-0.5
523
Tumor
-0.5
545
Tumor
-0.5
331
Tumor
-0.5
881
Tumor
-0.5
851
Tumor
-0.5
815
Tumor
-0.5
695
Tumor
-0.5
471
Tumor
-0.6
516
Normal
-0.6
938
Normal
-0.6
878
Normal
-0.6
211
Tumor
-0.6
951
Tumor
-0.6
877
Tumor
-0.6
686
Normal
-0.6
473
Tumor
-0.6
857
Tumor
-0.7
952
Normal
-0.7
954
Normal
-0.7
1025
Tumor
-0.7
1042
Normal
-0.8
738
Normal
-0.8
1026
Normal
-0.8
737
Tumor
-0.9
715
Tumor
-0.9
727
Tumor
-0.9
817
Tumor
-1.0
975
Tumor
-1.0
744
Normal
-1.0
685
Tumor
-1.3
1031
Tumor
-1.3
743
Tumor
-1.5
1041
Tumor
-4.3
1021
Tumor
-6.9
483
Tumor
N/A
484
Normal
N/A
487
Tumor
N/A
488
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
494
Normal
N/A
497
Tumor
N/A
498
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
1044
Normal
N/A
1043
Tumor
N/A
977
Tumor
N/A
978
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
1045
Tumor
N/A
535
Tumor
N/A
536
Normal
N/A
447
Tumor
N/A
448
Normal
N/A
697
Tumor
N/A
698
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
