We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LYN is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
19.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
13.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
3.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LYN is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.2
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
60.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
56.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
49.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
46.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
40.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
40.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
40.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
37.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
36.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
33.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
33.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
33.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
32.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
32.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
31.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
30.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
29.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
29.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
29.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
28.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
26.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
25.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
25.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
25.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
24.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
24.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
23.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
23.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
23.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
22.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
22.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
22.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
14.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
2.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
557
Tumor
1.3
715
Tumor
1.1
211
Tumor
0.9
661
Tumor
0.8
434
Normal
0.7
724
Normal
0.7
917
Tumor
0.7
125
Tumor
0.7
823
Tumor
0.6
685
Tumor
0.6
451
Tumor
0.5
966
Normal
0.5
427
Tumor
0.5
213
Tumor
0.5
861
Tumor
0.5
191
Tumor
0.5
367
Tumor
0.5
937
Tumor
0.5
467
Tumor
0.5
283
Tumor
0.4
537
Tumor
0.4
113
Tumor
0.4
217
Tumor
0.4
851
Tumor
0.4
375
Tumor
0.4
721
Tumor
0.4
343
Tumor
0.4
311
Tumor
0.4
262
Normal
0.4
978
Normal
0.4
697
Tumor
0.4
867
Tumor
0.4
385
Tumor
0.4
536
Normal
0.3
195
Tumor
0.3
524
Normal
0.3
478
Normal
0.3
231
Tumor
0.3
126
Normal
0.3
963
Tumor
0.3
525
Tumor
0.3
686
Normal
0.3
914
Normal
0.3
498
Normal
0.3
915
Tumor
0.3
421
Tumor
0.3
778
Normal
0.3
185
Tumor
0.3
187
Tumor
0.3
573
Tumor
0.3
192
Normal
0.3
814
Normal
0.3
432
Normal
0.2
124
Normal
0.2
271
Tumor
0.2
975
Tumor
0.2
368
Normal
0.2
492
Normal
0.2
218
Normal
0.2
911
Tumor
0.2
1044
Normal
0.2
952
Normal
0.2
567
Tumor
0.2
444
Normal
0.2
877
Tumor
0.2
1015
Tumor
0.2
553
Tumor
0.2
491
Tumor
0.2
114
Normal
0.2
212
Normal
0.2
984
Normal
0.2
696
Normal
0.2
538
Normal
0.2
332
Normal
0.2
344
Normal
0.2
713
Tumor
0.1
223
Tumor
0.1
224
Normal
0.1
528
Normal
0.1
284
Normal
0.1
954
Normal
0.1
353
Tumor
0.1
852
Normal
0.1
728
Normal
0.1
494
Normal
0.1
968
Normal
0.1
111
Normal
0.1
916
Normal
0.1
362
Normal
0.1
558
Normal
0.1
738
Normal
0.1
926
Normal
0.1
468
Normal
0.1
312
Normal
0.1
138
Normal
0.1
188
Normal
0.1
1014
Normal
0.1
146
Normal
0.1
366
Normal
0.1
142
Normal
0.1
716
Normal
0.1
956
Normal
0.1
221
Tumor
0.1
943
Tumor
0.1
446
Normal
0.1
527
Tumor
0.1
447
Tumor
0.1
493
Tumor
0.1
816
Normal
0.1
383
Tumor
0.1
526
Normal
0.1
471
Tumor
0.1
535
Tumor
0.1
881
Tumor
0.1
214
Normal
0.1
145
Tumor
0.1
976
Normal
0.1
391
Tumor
0.1
352
Normal
0.1
272
Normal
0.1
883
Tumor
0.1
1028
Normal
0.0
136
Normal
0.0
387
Tumor
0.0
964
Normal
0.0
958
Normal
0.0
436
Normal
0.0
448
Normal
0.0
268
Normal
0.0
554
Normal
0.0
723
Tumor
0.0
415
Tumor
0.0
232
Normal
0.0
857
Tumor
0.0
474
Normal
0.0
386
Normal
0.0
813
Tumor
0.0
481
Tumor
0.0
384
Normal
0.0
1026
Normal
0.0
918
Normal
0.0
1021
Tumor
0.0
1016
Normal
0.0
744
Normal
0.0
516
Normal
0.0
112
Tumor
0.0
722
Normal
0.0
1031
Tumor
0.0
574
Normal
0.0
392
Normal
0.0
364
Normal
0.0
874
Normal
0.0
396
Normal
0.0
328
Normal
0.0
546
Normal
0.0
924
Normal
0.0
866
Normal
0.0
742
Normal
0.0
376
Normal
0.0
456
Normal
0.0
461
Tumor
0.0
944
Normal
0.0
884
Normal
0.0
518
Normal
0.0
955
Tumor
0.0
628
Normal
0.0
286
Normal
0.0
1025
Tumor
0.0
424
Normal
0.0
131
Tumor
0.0
433
Tumor
0.0
228
Normal
0.0
698
Normal
0.0
443
Tumor
0.0
925
Tumor
0.0
196
Normal
0.0
662
Normal
-0.1
128
Normal
-0.1
533
Tumor
-0.1
416
Normal
-0.1
981
Tumor
-0.1
462
Normal
-0.1
482
Normal
-0.1
472
Normal
-0.1
714
Normal
-0.1
278
Normal
-0.1
488
Normal
-0.1
358
Normal
-0.1
261
Tumor
-0.1
815
Tumor
-0.1
534
Normal
-0.1
824
Normal
-0.1
412
Normal
-0.1
127
Tumor
-0.1
672
Normal
-0.1
938
Normal
-0.1
568
Normal
-0.1
395
Tumor
-0.1
1046
Normal
-0.1
327
Tumor
-0.1
922
Normal
-0.1
913
Tumor
-0.1
132
Normal
-0.1
172
Normal
-0.1
422
Normal
-0.1
1022
Normal
-0.1
858
Normal
-0.1
514
Normal
-0.1
414
Normal
-0.1
455
Tumor
-0.1
354
Normal
-0.1
298
Normal
-0.1
466
Normal
-0.1
356
Normal
-0.1
665
Tumor
-0.1
862
Normal
-0.1
1041
Tumor
-0.1
258
Normal
-0.1
967
Tumor
-0.1
756
Normal
-0.1
285
Tumor
-0.1
314
Normal
-0.1
868
Normal
-0.1
818
Normal
-0.1
977
Tumor
-0.1
445
Tumor
-0.1
1042
Normal
-0.1
636
Normal
-0.2
222
Normal
-0.2
864
Normal
-0.2
882
Normal
-0.2
664
Normal
-0.2
671
Tumor
-0.2
953
Tumor
-0.2
572
Normal
-0.2
162
Normal
-0.2
616
Normal
-0.2
331
Tumor
-0.2
564
Normal
-0.2
135
Tumor
-0.2
873
Tumor
-0.2
983
Tumor
-0.2
642
Normal
-0.2
755
Tumor
-0.2
982
Normal
-0.2
394
Normal
-0.2
786
Normal
-0.2
428
Normal
-0.2
342
Normal
-0.2
464
Normal
-0.2
1043
Tumor
-0.2
1032
Normal
-0.2
426
Normal
-0.2
865
Tumor
-0.2
817
Tumor
-0.2
878
Normal
-0.2
666
Normal
-0.2
746
Normal
-0.2
388
Normal
-0.2
297
Tumor
-0.2
186
Normal
-0.2
365
Tumor
-0.2
484
Normal
-0.2
617
Tumor
-0.2
912
Normal
-0.2
363
Tumor
-0.3
957
Tumor
-0.3
951
Tumor
-0.3
141
Tumor
-0.3
341
Tumor
-0.3
648
Normal
-0.3
515
Tumor
-0.3
641
Tumor
-0.3
452
Normal
-0.3
563
Tumor
-0.3
137
Tumor
-0.3
148
Normal
-0.3
147
Tumor
-0.3
413
Tumor
-0.3
257
Tumor
-0.3
463
Tumor
-0.3
618
Normal
-0.3
267
Tumor
-0.3
361
Tumor
-0.3
393
Tumor
-0.3
745
Tumor
-0.3
277
Tumor
-0.4
497
Tumor
-0.4
1045
Tumor
-0.4
921
Tumor
-0.4
351
Tumor
-0.4
523
Tumor
-0.4
313
Tumor
-0.4
431
Tumor
-0.4
477
Tumor
-0.4
473
Tumor
-0.4
741
Tumor
-0.4
965
Tumor
-0.4
227
Tumor
-0.4
737
Tumor
-0.5
483
Tumor
-0.5
513
Tumor
-0.5
545
Tumor
-0.5
423
Tumor
-0.5
1027
Tumor
-0.5
355
Tumor
-0.5
727
Tumor
-0.5
627
Tumor
-0.5
123
Tumor
-0.5
161
Tumor
-0.5
923
Tumor
-0.5
517
Tumor
-0.5
743
Tumor
-0.5
571
Tumor
-0.5
615
Tumor
-0.5
411
Tumor
-0.6
863
Tumor
-0.6
663
Tumor
-0.7
425
Tumor
-0.7
171
Tumor
-0.7
777
Tumor
-0.8
1013
Tumor
-0.8
785
Tumor
-0.9
435
Tumor
-0.9
635
Tumor
-1.0
357
Tumor
-1.0
647
Tumor
-1.0
465
Tumor
-1.2
487
Tumor
-1.2
695
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
