HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:4.1 nTPM
HPA Brain:9.9 nTPM
GTEx:4.1 nTPM
FANTOM5:17.5 Scaled Tags Per Million
Pig:20.0 nTPM
Mouse:46.7 nTPM
Allen mouse:1.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells05101520253035nCPM

HIPPOCAMPUS - Antibody stainingi
Antibody HPA028806
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 9.9
Sample id Sample description nTPM
Hippocampus
nTPM: 9.3
1911 Female, age 85, right hemisphere 11.0
1898 Male, age 80, left hemisphere 9.4
1855 Male, age 76, left hemisphere 9.3
2529 Female, age 94, left hemisphere 9.3
2148 Female, age 91, left hemisphere 8.4
2621 Female, age 67, right hemisphere 8.1
Dentate gyrus
nTPM: 8.8
2010 Male, age 76, both hemispheres 10.0
1927 Female, age 91, both hemispheres 9.4
2246 Female, age 85, both hemispheres 9.1
2530 Female, age 94, left hemisphere 8.9
2528 Male, age 74, both hemispheres 8.4
2531 Female, age 67, both hemispheres 6.9
Entorhinal gyrus
nTPM: 8.4
2117 Female, age 91, right hemisphere 10.0
1938 Female, age 85, left hemisphere 9.2
1787 Male, age 76, left hemisphere 8.0
2686 Male, age 75, right hemisphere 7.9
2613 Female, age 94, left hemisphere 7.6
2764 Male, age 80, right hemisphere 7.3
Hippocampus, CA1
nTPM: 9.9
2749 Male, age 80, left hemisphere 11.6
1873 Female, age 85, both hemispheres 10.2
2045 Male, age 76, both hemispheres 9.5
2527 Male, age 74, both hemispheres 9.5
2082 Female, age 91, right hemisphere 8.7
Hippocampus, CA2
nTPM: 9.3
1892 Male, age 76, both hemispheres 10.9
2113 Female, age 91, right hemisphere 9.3
2249 Male, age 74, both hemispheres 9.3
1940 Female, age 85, left hemisphere 8.9
1963 Male, age 80, left hemisphere 8.9
2437 Female, age 94, left hemisphere 8.4
Hippocampus, CA3
nTPM: 9.5
2137 Male, age 80, left hemisphere 11.8
1867 Male, age 76, both hemispheres 11.7
1891 Female, age 85, both hemispheres 10.7
2436 Male, age 74, both hemispheres 8.6
2861 Female, age 67, both hemispheres 7.6
2620 Female, age 94, left hemisphere 6.6
Parahippocampal cortex
nTPM: 9.0
1933 Female, age 85, both hemispheres 9.9
1850 Male, age 80, both hemispheres 9.3
2692 Male, age 74, both hemispheres 9.3
2693 Female, age 94, both hemispheres 9.3
2018 Male, age 76, both hemispheres 9.2
2250 Female, age 67, right hemisphere 9.1
2245 Female, age 91, both hemispheres 8.8
1990 Female, age 91, right hemisphere 8.7
2532 Female, age 72, left hemisphere 8.1
2622 Female, age 67, right hemisphere 7.9
Perirhinal gyrus
nTPM: 8.7
1841 Female, age 85, right hemisphere 9.9
2521 Female, age 94, right hemisphere 9.2
1847 Female, age 91, left hemisphere 8.2
1794 Male, age 80, right hemisphere 8.0
2848 Male, age 76, right hemisphere 8.0
Subiculum
nTPM: 9.8
2438 Female, age 94, left hemisphere 11.4
1901 Male, age 80, both hemispheres 10.8
2042 Male, age 76, both hemispheres 9.8
2729 Female, age 91, right hemisphere 9.5
1977 Female, age 85, both hemispheres 9.0
2619 Male, age 74, both hemispheres 8.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 4.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 4.1
Samples: 255

Max nTPM: 7.1
Min nTPM: 2.5
Std nTPM: 0.9
Median nTPM: 3.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 7.1
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 7.1
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 6.9
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 6.7
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 6.7
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 6.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 6.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 6.4
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 6.3
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 6.2
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 6.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 17.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 17.5
FF:10153-102I9 76 years, female 20.5
FF:10169-103B7 60 years, female 14.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 20.0
Pig sample Sample description nTPM
17.217.517.816.818.4024681012141618
 		Subiculum
nTPM: 17.5
Samples: 4

Max nTPM: 18.4
Min nTPM: 16.8
Sample A Female 18.4
Sample B Female 16.8
Sample C Male 17.3
Sample D Male 17.6
19.820.020.319.420.702468101214161820
 		Dorsal hippocampus
nTPM: 20.1
Samples: 4

Max nTPM: 20.7
Min nTPM: 19.4
Sample A Female 19.4
Sample B Female 19.9
Sample C Male 20.2
Sample D Male 20.7
18.018.118.517.718.2024681012141618
 		Entorhinal cortex
nTPM: 18.4
Samples: 4

Max nTPM: 19.4
Min nTPM: 17.7
Sample A Female 17.7
Sample B Female 19.4
Sample C Male 18.2
Sample D Male 18.1
16.618.619.418.120.202468101214161820
 		Ventral hippocampus
nTPM: 17.4
Samples: 4

Max nTPM: 20.2
Min nTPM: 12.0
Sample A Female 20.2
Sample B Female 19.2
Sample C Male 12.0
Sample D Male 18.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 46.7
Mouse sample Sample description nTPM
39.441.343.138.644.00510152025303540
 		Entorhinal cortex
nTPM: 41.3
Samples: 4

Max nTPM: 44.0
Min nTPM: 38.6
Sample A Male 38.6
Sample B Male 44.0
Sample C Female 42.8
Sample D Female 39.7
44.145.448.042.553.605101520253035404550
 		Hippocampal formation
nTPM: 46.7
Samples: 4

Max nTPM: 53.6
Min nTPM: 42.5
Sample A Male 53.6
Sample B Male 46.1
Sample C Female 42.5
Sample D Female 44.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.4
75080996 Antisense, RP_060412_04_H01, Mouse strain C57BL/6J (56 days, male) 1.7
71280676 Antisense, RP_050818_01_C12, Mouse strain C57BL/6J (56 days, male) 1.2

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