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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
2.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
2.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
2.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PCDHGB6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.2
Number of samples
231
Samples
Sample
Description
TPM
DO45305
0 years, male, NA, stage:4, alive, 300 days
83.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
59.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
32.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
28.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
27.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
21.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
17.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
4.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
2.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
2.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
2.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
2.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
2.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
1.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
1.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
1.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
1.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
1.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
1.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
1.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
1.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
446
Normal
2.0
443
Tumor
2.0
132
Normal
1.6
432
Normal
1.6
387
Tumor
1.6
388
Normal
1.6
314
Normal
1.5
445
Tumor
1.4
391
Tumor
1.4
435
Tumor
1.3
434
Normal
1.3
332
Normal
1.3
394
Normal
1.3
396
Normal
1.3
386
Normal
1.3
278
Normal
1.3
368
Normal
1.3
444
Normal
1.2
366
Normal
1.2
137
Tumor
1.2
384
Normal
1.2
331
Tumor
1.1
392
Normal
1.1
414
Normal
1.1
361
Tumor
1.1
376
Normal
1.0
136
Normal
1.0
428
Normal
1.0
298
Normal
1.0
393
Tumor
1.0
436
Normal
1.0
964
Normal
0.9
138
Normal
0.9
128
Normal
0.9
114
Normal
0.9
365
Tumor
0.9
312
Normal
0.9
424
Normal
0.8
362
Normal
0.8
433
Tumor
0.8
426
Normal
0.8
534
Normal
0.8
431
Tumor
0.8
422
Normal
0.8
413
Tumor
0.8
146
Normal
0.8
713
Tumor
0.7
1042
Normal
0.7
111
Normal
0.7
514
Normal
0.7
967
Tumor
0.7
968
Normal
0.7
126
Normal
0.7
1026
Normal
0.6
546
Normal
0.6
423
Tumor
0.6
427
Tumor
0.6
954
Normal
0.6
922
Normal
0.6
421
Tumor
0.6
425
Tumor
0.6
367
Tumor
0.5
383
Tumor
0.5
517
Tumor
0.5
817
Tumor
0.5
1044
Normal
0.5
963
Tumor
0.5
528
Normal
0.5
926
Normal
0.5
462
Normal
0.5
482
Normal
0.5
918
Normal
0.5
944
Normal
0.5
1046
Normal
0.5
958
Normal
0.5
852
Normal
0.5
526
Normal
0.5
857
Tumor
0.4
142
Normal
0.4
481
Tumor
0.4
141
Tumor
0.4
722
Normal
0.4
516
Normal
0.4
472
Normal
0.4
921
Tumor
0.3
277
Tumor
0.3
313
Tumor
0.3
124
Normal
0.3
145
Tumor
0.3
375
Tumor
0.3
523
Tumor
0.3
513
Tumor
0.3
924
Normal
0.3
385
Tumor
0.3
395
Tumor
0.3
1022
Normal
0.3
478
Normal
0.3
818
Normal
0.3
447
Tumor
0.2
938
Normal
0.2
716
Normal
0.2
186
Normal
0.2
1028
Normal
0.2
1045
Tumor
0.2
297
Tumor
0.2
696
Normal
0.2
966
Normal
0.2
524
Normal
0.2
686
Normal
0.2
473
Tumor
0.2
518
Normal
0.2
536
Normal
0.2
221
Tumor
0.2
112
Tumor
0.1
135
Tumor
0.1
527
Tumor
0.1
477
Tumor
0.1
538
Normal
0.1
196
Normal
0.1
976
Normal
0.1
816
Normal
0.1
195
Tumor
0.1
1032
Normal
0.1
956
Normal
0.1
823
Tumor
0.1
162
Normal
0.1
148
Normal
0.1
192
Normal
0.1
214
Normal
0.1
858
Normal
0.0
448
Normal
0.0
525
Tumor
0.0
474
Normal
0.0
955
Tumor
0.0
172
Normal
0.0
715
Tumor
0.0
721
Tumor
0.0
714
Normal
0.0
697
Tumor
0.0
925
Tumor
0.0
222
Normal
0.0
916
Normal
-0.1
917
Tumor
-0.1
533
Tumor
-0.1
943
Tumor
-0.1
824
Normal
-0.1
851
Tumor
-0.1
915
Tumor
-0.1
217
Tumor
-0.1
218
Normal
-0.1
191
Tumor
-0.1
461
Tumor
-0.2
113
Tumor
-0.2
545
Tumor
-0.2
471
Tumor
-0.2
515
Tumor
-0.2
125
Tumor
-0.2
213
Tumor
-0.2
975
Tumor
-0.2
188
Normal
-0.2
1025
Tumor
-0.3
698
Normal
-0.3
127
Tumor
-0.3
953
Tumor
-0.3
123
Tumor
-0.3
311
Tumor
-0.3
1041
Tumor
-0.3
951
Tumor
-0.4
187
Tumor
-0.4
965
Tumor
-0.4
161
Tumor
-0.4
937
Tumor
-0.5
1021
Tumor
-0.5
923
Tumor
-0.5
147
Tumor
-0.5
952
Normal
-0.5
537
Tumor
-0.5
1043
Tumor
-0.5
185
Tumor
-0.5
695
Tumor
-0.6
685
Tumor
-0.7
535
Tumor
-0.7
1027
Tumor
-0.7
815
Tumor
-0.7
131
Tumor
-0.7
171
Tumor
-0.8
1031
Tumor
-0.8
554
Normal
-1.0
957
Tumor
-1.4
553
Tumor
-1.8
351
Tumor
N/A
231
Tumor
N/A
352
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
355
Tumor
N/A
356
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
487
Tumor
N/A
488
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
494
Normal
N/A
497
Tumor
N/A
498
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
267
Tumor
N/A
268
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
755
Tumor
N/A
635
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
777
Tumor
N/A
415
Tumor
N/A
778
Normal
N/A
416
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
663
Tumor
N/A
664
Normal
N/A
785
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
666
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
452
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
574
Normal
N/A
212
Normal
N/A
455
Tumor
N/A
456
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
