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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SHANK3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
99.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
21.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
5.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
4.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
4.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
3.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
2.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
2.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
2.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SHANK3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.5
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
33.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
29.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
27.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
27.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
26.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
23.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
19.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
1.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
261
Tumor
0.7
572
Normal
0.7
513
Tumor
0.7
568
Normal
0.7
672
Normal
0.6
648
Normal
0.6
467
Tumor
0.5
327
Tumor
0.5
498
Normal
0.5
954
Normal
0.5
384
Normal
0.5
218
Normal
0.5
332
Normal
0.5
615
Tumor
0.5
866
Normal
0.5
627
Tumor
0.5
368
Normal
0.5
636
Normal
0.5
944
Normal
0.5
744
Normal
0.5
314
Normal
0.4
698
Normal
0.4
376
Normal
0.4
352
Normal
0.4
564
Normal
0.4
666
Normal
0.4
882
Normal
0.4
446
Normal
0.4
258
Normal
0.4
488
Normal
0.4
984
Normal
0.4
742
Normal
0.4
128
Normal
0.4
968
Normal
0.4
132
Normal
0.4
412
Normal
0.4
786
Normal
0.4
148
Normal
0.4
196
Normal
0.4
574
Normal
0.4
723
Tumor
0.4
558
Normal
0.4
111
Normal
0.4
354
Normal
0.4
1045
Tumor
0.4
394
Normal
0.4
664
Normal
0.4
914
Normal
0.4
172
Normal
0.4
383
Tumor
0.4
186
Normal
0.4
824
Normal
0.4
358
Normal
0.4
286
Normal
0.4
884
Normal
0.4
818
Normal
0.3
482
Normal
0.3
472
Normal
0.3
785
Tumor
0.3
162
Normal
0.3
363
Tumor
0.3
114
Normal
0.3
686
Normal
0.3
312
Normal
0.3
395
Tumor
0.3
127
Tumor
0.3
746
Normal
0.3
616
Normal
0.3
124
Normal
0.3
366
Normal
0.3
462
Normal
0.3
861
Tumor
0.3
298
Normal
0.3
344
Normal
0.3
386
Normal
0.3
642
Normal
0.3
142
Normal
0.3
696
Normal
0.3
126
Normal
0.3
571
Tumor
0.3
222
Normal
0.3
778
Normal
0.3
342
Normal
0.3
484
Normal
0.3
913
Tumor
0.3
362
Normal
0.3
426
Normal
0.3
432
Normal
0.3
113
Tumor
0.3
393
Tumor
0.3
868
Normal
0.3
647
Tumor
0.3
553
Tumor
0.3
227
Tumor
0.3
1014
Normal
0.3
356
Normal
0.3
926
Normal
0.3
415
Tumor
0.3
617
Tumor
0.3
1044
Normal
0.3
494
Normal
0.3
956
Normal
0.3
212
Normal
0.3
136
Normal
0.3
662
Normal
0.3
514
Normal
0.3
262
Normal
0.3
353
Tumor
0.3
278
Normal
0.3
414
Normal
0.2
272
Normal
0.2
915
Tumor
0.2
1032
Normal
0.2
456
Normal
0.2
284
Normal
0.2
451
Tumor
0.2
428
Normal
0.2
1016
Normal
0.2
777
Tumor
0.2
424
Normal
0.2
964
Normal
0.2
416
Normal
0.2
728
Normal
0.2
922
Normal
0.2
557
Tumor
0.2
112
Tumor
0.2
436
Normal
0.2
214
Normal
0.2
534
Normal
0.2
138
Normal
0.2
524
Normal
0.2
981
Tumor
0.2
433
Tumor
0.2
396
Normal
0.2
1028
Normal
0.2
1022
Normal
0.2
192
Normal
0.2
938
Normal
0.2
328
Normal
0.2
1041
Tumor
0.2
195
Tumor
0.2
232
Normal
0.2
268
Normal
0.2
141
Tumor
0.2
878
Normal
0.2
714
Normal
0.2
563
Tumor
0.2
365
Tumor
0.2
481
Tumor
0.2
191
Tumor
0.2
958
Normal
0.2
536
Normal
0.2
364
Normal
0.2
1025
Tumor
0.2
918
Normal
0.2
448
Normal
0.2
862
Normal
0.2
1046
Normal
0.2
528
Normal
0.2
618
Normal
0.2
716
Normal
0.2
455
Tumor
0.2
145
Tumor
0.2
434
Normal
0.2
864
Normal
0.2
546
Normal
0.2
816
Normal
0.2
444
Normal
0.2
1026
Normal
0.2
474
Normal
0.1
916
Normal
0.1
492
Normal
0.1
435
Tumor
0.1
912
Normal
0.1
224
Normal
0.1
516
Normal
0.1
937
Tumor
0.1
924
Normal
0.1
422
Normal
0.1
185
Tumor
0.1
452
Normal
0.1
1043
Tumor
0.1
217
Tumor
0.1
1015
Tumor
0.1
361
Tumor
0.1
874
Normal
0.1
955
Tumor
0.1
188
Normal
0.1
756
Normal
0.1
223
Tumor
0.1
665
Tumor
0.1
858
Normal
0.1
468
Normal
0.1
695
Tumor
0.1
923
Tumor
0.1
137
Tumor
0.1
965
Tumor
0.1
464
Normal
0.1
146
Normal
0.1
387
Tumor
0.1
873
Tumor
0.1
745
Tumor
0.1
493
Tumor
0.1
628
Normal
0.1
447
Tumor
0.1
228
Normal
0.1
963
Tumor
0.1
331
Tumor
0.1
713
Tumor
0.1
1042
Normal
0.1
727
Tumor
0.1
411
Tumor
0.1
477
Tumor
0.1
388
Normal
0.1
518
Normal
0.1
738
Normal
0.1
423
Tumor
0.1
982
Normal
0.1
526
Normal
0.1
814
Normal
0.1
977
Tumor
0.1
421
Tumor
0.1
863
Tumor
0.1
852
Normal
0.1
722
Normal
0.1
823
Tumor
0.1
554
Normal
0.0
976
Normal
0.0
466
Normal
0.0
851
Tumor
0.0
952
Normal
0.0
978
Normal
0.0
478
Normal
0.0
187
Tumor
0.0
857
Tumor
0.0
641
Tumor
0.0
715
Tumor
0.0
483
Tumor
0.0
943
Tumor
0.0
1031
Tumor
0.0
271
Tumor
0.0
538
Normal
0.0
213
Tumor
0.0
671
Tumor
0.0
357
Tumor
0.0
911
Tumor
0.0
431
Tumor
0.0
343
Tumor
0.0
461
Tumor
0.0
463
Tumor
0.0
413
Tumor
0.0
975
Tumor
0.0
567
Tumor
0.0
881
Tumor
0.0
221
Tumor
-0.1
515
Tumor
-0.1
925
Tumor
-0.1
231
Tumor
-0.1
517
Tumor
-0.1
867
Tumor
-0.1
525
Tumor
-0.1
341
Tumor
-0.1
267
Tumor
-0.1
966
Normal
-0.1
171
Tumor
-0.1
443
Tumor
-0.1
297
Tumor
-0.1
473
Tumor
-0.1
957
Tumor
-0.1
392
Normal
-0.1
161
Tumor
-0.1
465
Tumor
-0.1
533
Tumor
-0.2
635
Tumor
-0.2
277
Tumor
-0.2
123
Tumor
-0.2
697
Tumor
-0.2
967
Tumor
-0.2
311
Tumor
-0.2
883
Tumor
-0.2
545
Tumor
-0.2
471
Tumor
-0.2
147
Tumor
-0.2
497
Tumor
-0.2
721
Tumor
-0.2
491
Tumor
-0.2
391
Tumor
-0.2
1013
Tumor
-0.2
125
Tumor
-0.2
355
Tumor
-0.2
537
Tumor
-0.2
921
Tumor
-0.2
953
Tumor
-0.2
257
Tumor
-0.2
313
Tumor
-0.3
917
Tumor
-0.3
755
Tumor
-0.3
741
Tumor
-0.3
724
Normal
-0.3
573
Tumor
-0.3
445
Tumor
-0.3
427
Tumor
-0.3
877
Tumor
-0.3
367
Tumor
-0.3
1027
Tumor
-0.3
685
Tumor
-0.3
737
Tumor
-0.3
135
Tumor
-0.3
487
Tumor
-0.3
425
Tumor
-0.4
535
Tumor
-0.4
817
Tumor
-0.4
865
Tumor
-0.4
131
Tumor
-0.4
523
Tumor
-0.4
983
Tumor
-0.4
743
Tumor
-0.5
661
Tumor
-0.5
663
Tumor
-0.5
1021
Tumor
-0.5
813
Tumor
-0.5
211
Tumor
-0.5
815
Tumor
-0.5
285
Tumor
-0.6
527
Tumor
-0.6
283
Tumor
-0.6
385
Tumor
-0.7
951
Tumor
-0.8
351
Tumor
-0.8
375
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
