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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TWF2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
196.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
119.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
118.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
111.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
108.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
101.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
93.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
88.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
83.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
81.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
80.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
78.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
75.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
75.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
75.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
74.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
74.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
73.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
71.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
70.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
70.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
68.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
65.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
65.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
65.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
63.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
63.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
62.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
61.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
60.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
59.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
58.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
58.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
57.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
57.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
56.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
56.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
56.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
55.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
55.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
54.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
53.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
53.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
53.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
53.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
52.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
52.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
52.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
51.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
50.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
50.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
50.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
49.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
49.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
49.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
48.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
48.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
48.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
48.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
47.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
47.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
46.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
45.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
45.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
45.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
45.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
44.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
44.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
44.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
44.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
44.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
44.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
44.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
44.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
43.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
43.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
43.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
43.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
43.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
42.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
42.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
42.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
42.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
42.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
41.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
39.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
39.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
39.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
39.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
38.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
38.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
38.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
38.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
38.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
37.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
37.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
37.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
37.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
37.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
37.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
36.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
36.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
36.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
36.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
36.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
35.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
35.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
35.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
35.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
35.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
35.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
35.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
34.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
34.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
34.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
34.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
34.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
34.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
34.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
34.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
34.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
33.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
33.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
33.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
33.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
33.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
33.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
33.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
33.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
33.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
33.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
32.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
32.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
32.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
32.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
32.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
32.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
31.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
31.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
31.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
31.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
30.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
30.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
30.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
30.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
30.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
29.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
29.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
29.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
29.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
29.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
29.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
29.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
28.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
28.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
28.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
28.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
28.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
28.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
28.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
27.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
27.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
27.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
27.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
27.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
27.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
27.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
27.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
27.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
27.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
27.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
26.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
26.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
26.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
26.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
26.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
25.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
25.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
25.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
25.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
25.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
25.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
25.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
25.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
25.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
25.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
24.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
24.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
24.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
24.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
24.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
24.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
24.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
24.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
23.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
23.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
23.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
23.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
23.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
23.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
23.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
22.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
22.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
22.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
22.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
22.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
22.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
22.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
21.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
21.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
21.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
20.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
20.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
20.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
20.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
20.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
20.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
20.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
20.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
19.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
19.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
19.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
19.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
18.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
18.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
18.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
18.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
18.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
18.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
18.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
17.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
17.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
16.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
16.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
16.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
15.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
15.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
15.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
15.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
12.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TWF2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.7
Number of samples
231
Samples
Sample
Description
TPM
DO50785
0 years, male, NA, stage:4, dead, 90 days
104.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
90.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
85.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
84.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
79.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
75.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
68.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
60.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
59.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
58.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
58.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
55.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
54.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
52.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
50.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
50.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
49.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
47.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
47.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
46.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
44.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
44.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
44.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
44.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
43.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
43.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
43.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
43.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
42.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
42.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
42.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
42.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
40.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
40.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
40.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
39.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
39.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
38.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
38.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
38.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
38.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
38.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
38.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
38.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
37.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
37.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
37.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
37.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
37.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
36.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
36.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
36.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
35.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
35.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
34.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
34.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
34.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
33.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
32.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
32.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
32.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
31.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
31.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
31.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
31.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
31.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
31.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
31.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
30.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
30.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
30.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
30.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
29.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
29.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
29.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
29.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
29.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
29.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
29.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
28.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
28.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
28.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
28.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
28.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
27.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
27.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
27.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
27.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
27.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
27.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
27.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
27.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
26.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
26.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
26.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
26.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
26.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
26.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
26.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
25.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
25.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
25.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
24.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
24.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
24.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
24.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
24.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
23.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
23.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
23.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
23.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
23.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
22.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
22.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
22.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
22.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
22.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
21.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
21.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
21.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
21.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
20.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
20.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
20.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
20.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
19.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
19.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
15.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
465
Tumor
0.8
925
Tumor
0.8
161
Tumor
0.8
112
Tumor
0.7
477
Tumor
0.6
953
Tumor
0.6
423
Tumor
0.5
567
Tumor
0.5
427
Tumor
0.5
137
Tumor
0.5
411
Tumor
0.5
937
Tumor
0.5
913
Tumor
0.5
525
Tumor
0.4
851
Tumor
0.4
483
Tumor
0.4
954
Normal
0.4
311
Tumor
0.4
647
Tumor
0.4
283
Tumor
0.4
185
Tumor
0.4
951
Tumor
0.4
375
Tumor
0.4
211
Tumor
0.4
883
Tumor
0.4
227
Tumor
0.4
478
Normal
0.3
1013
Tumor
0.3
434
Normal
0.3
524
Normal
0.3
1041
Tumor
0.3
538
Normal
0.3
617
Tumor
0.3
641
Tumor
0.3
492
Normal
0.3
268
Normal
0.3
536
Normal
0.3
444
Normal
0.3
727
Tumor
0.3
188
Normal
0.3
943
Tumor
0.2
224
Normal
0.2
978
Normal
0.2
135
Tumor
0.2
817
Tumor
0.2
363
Tumor
0.2
195
Tumor
0.2
498
Normal
0.2
124
Normal
0.2
713
Tumor
0.2
421
Tumor
0.2
267
Tumor
0.2
146
Normal
0.2
127
Tumor
0.2
563
Tumor
0.2
141
Tumor
0.2
471
Tumor
0.2
126
Normal
0.2
661
Tumor
0.2
192
Normal
0.2
917
Tumor
0.2
415
Tumor
0.2
443
Tumor
0.2
145
Tumor
0.2
468
Normal
0.2
355
Tumor
0.2
724
Normal
0.2
487
Tumor
0.2
213
Tumor
0.2
262
Normal
0.2
537
Tumor
0.2
533
Tumor
0.1
467
Tumor
0.1
1028
Normal
0.1
916
Normal
0.1
284
Normal
0.1
114
Normal
0.1
1015
Tumor
0.1
123
Tumor
0.1
128
Normal
0.1
425
Tumor
0.1
367
Tumor
0.1
343
Tumor
0.1
686
Normal
0.1
744
Normal
0.1
392
Normal
0.1
966
Normal
0.1
755
Tumor
0.1
1014
Normal
0.1
662
Normal
0.1
365
Tumor
0.1
571
Tumor
0.1
221
Tumor
0.1
212
Normal
0.1
716
Normal
0.1
384
Normal
0.1
383
Tumor
0.1
976
Normal
0.1
857
Tumor
0.1
874
Normal
0.1
445
Tumor
0.1
395
Tumor
0.1
387
Tumor
0.1
924
Normal
0.1
1031
Tumor
0.1
516
Normal
0.0
926
Normal
0.0
191
Tumor
0.0
528
Normal
0.0
852
Normal
0.0
413
Tumor
0.0
223
Tumor
0.0
814
Normal
0.0
914
Normal
0.0
138
Normal
0.0
391
Tumor
0.0
957
Tumor
0.0
915
Tumor
0.0
823
Tumor
0.0
558
Normal
0.0
451
Tumor
0.0
728
Normal
0.0
878
Normal
0.0
452
Normal
0.0
461
Tumor
0.0
142
Normal
0.0
344
Normal
0.0
738
Normal
0.0
778
Normal
0.0
867
Tumor
0.0
455
Tumor
0.0
952
Normal
0.0
125
Tumor
0.0
172
Normal
0.0
756
Normal
0.0
432
Normal
0.0
1044
Normal
0.0
187
Tumor
0.0
723
Tumor
0.0
963
Tumor
0.0
944
Normal
0.0
721
Tumor
0.0
341
Tumor
0.0
228
Normal
0.0
272
Normal
0.0
217
Tumor
0.0
214
Normal
0.0
922
Normal
0.0
881
Tumor
0.0
136
Normal
0.0
918
Normal
0.0
474
Normal
0.0
447
Tumor
0.0
361
Tumor
0.0
113
Tumor
0.0
535
Tumor
0.0
394
Normal
0.0
494
Normal
0.0
416
Normal
0.0
984
Normal
0.0
424
Normal
0.0
742
Normal
0.0
388
Normal
0.0
362
Normal
0.0
975
Tumor
0.0
232
Normal
0.0
873
Tumor
0.0
816
Normal
0.0
513
Tumor
0.0
162
Normal
0.0
958
Normal
0.0
386
Normal
0.0
1043
Tumor
0.0
628
Normal
0.0
554
Normal
0.0
286
Normal
-0.1
111
Normal
-0.1
1046
Normal
-0.1
938
Normal
-0.1
672
Normal
-0.1
412
Normal
-0.1
526
Normal
-0.1
616
Normal
-0.1
448
Normal
-0.1
911
Tumor
-0.1
148
Normal
-0.1
366
Normal
-0.1
921
Tumor
-0.1
858
Normal
-0.1
695
Tumor
-0.1
573
Tumor
-0.1
865
Tumor
-0.1
546
Normal
-0.1
493
Tumor
-0.1
514
Normal
-0.1
422
Normal
-0.1
1026
Normal
-0.1
618
Normal
-0.1
1032
Normal
-0.1
332
Normal
-0.1
714
Normal
-0.1
312
Normal
-0.1
463
Tumor
-0.1
983
Tumor
-0.1
1016
Normal
-0.1
472
Normal
-0.1
464
Normal
-0.1
518
Normal
-0.1
1022
Normal
-0.1
923
Tumor
-0.1
466
Normal
-0.1
696
Normal
-0.1
488
Normal
-0.1
297
Tumor
-0.1
642
Normal
-0.1
615
Tumor
-0.1
258
Normal
-0.1
868
Normal
-0.1
278
Normal
-0.1
313
Tumor
-0.1
462
Normal
-0.1
572
Normal
-0.1
956
Normal
-0.1
186
Normal
-0.1
376
Normal
-0.1
864
Normal
-0.1
1042
Normal
-0.1
648
Normal
-0.1
385
Tumor
-0.1
491
Tumor
-0.1
218
Normal
-0.1
666
Normal
-0.1
636
Normal
-0.1
861
Tumor
-0.1
786
Normal
-0.1
364
Normal
-0.1
261
Tumor
-0.1
982
Normal
-0.2
328
Normal
-0.2
368
Normal
-0.2
746
Normal
-0.2
664
Normal
-0.2
352
Normal
-0.2
147
Tumor
-0.2
517
Tumor
-0.2
824
Normal
-0.2
866
Normal
-0.2
722
Normal
-0.2
271
Tumor
-0.2
964
Normal
-0.2
698
Normal
-0.2
196
Normal
-0.2
356
Normal
-0.2
981
Tumor
-0.2
818
Normal
-0.2
568
Normal
-0.2
564
Normal
-0.2
813
Tumor
-0.2
414
Normal
-0.2
968
Normal
-0.2
298
Normal
-0.2
446
Normal
-0.2
222
Normal
-0.2
882
Normal
-0.2
396
Normal
-0.2
456
Normal
-0.2
277
Tumor
-0.2
671
Tumor
-0.2
431
Tumor
-0.2
327
Tumor
-0.2
534
Normal
-0.2
884
Normal
-0.2
484
Normal
-0.2
285
Tumor
-0.2
697
Tumor
-0.2
553
Tumor
-0.2
545
Tumor
-0.2
862
Normal
-0.2
574
Normal
-0.2
482
Normal
-0.2
231
Tumor
-0.2
433
Tumor
-0.2
912
Normal
-0.2
426
Normal
-0.2
132
Normal
-0.2
354
Normal
-0.2
428
Normal
-0.2
435
Tumor
-0.2
436
Normal
-0.3
358
Normal
-0.3
557
Tumor
-0.3
473
Tumor
-0.3
955
Tumor
-0.3
257
Tumor
-0.3
785
Tumor
-0.3
663
Tumor
-0.3
1025
Tumor
-0.3
715
Tumor
-0.3
815
Tumor
-0.3
342
Normal
-0.3
977
Tumor
-0.3
1045
Tumor
-0.3
357
Tumor
-0.3
331
Tumor
-0.4
351
Tumor
-0.4
627
Tumor
-0.4
314
Normal
-0.4
685
Tumor
-0.4
171
Tumor
-0.4
737
Tumor
-0.4
965
Tumor
-0.4
877
Tumor
-0.4
1021
Tumor
-0.4
967
Tumor
-0.4
741
Tumor
-0.4
497
Tumor
-0.5
515
Tumor
-0.5
481
Tumor
-0.5
1027
Tumor
-0.5
393
Tumor
-0.5
665
Tumor
-0.6
635
Tumor
-0.6
353
Tumor
-0.6
131
Tumor
-0.6
745
Tumor
-0.6
743
Tumor
-0.7
527
Tumor
-0.7
863
Tumor
-0.7
523
Tumor
-0.8
777
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
