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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CFHR1 is validated prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
781.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3471.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3404.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2706.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2610.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2522.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2458.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2456.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2368.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2367.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2357.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2318.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2272.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2144.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2113.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1997.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1969.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1967.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1918.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1918.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1907.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1896.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1849.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1844.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1799.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1766.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1741.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1730.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1724.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1695.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1692.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1681.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1672.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1649.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1643.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1629.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1619.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1613.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1607.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1574.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1562.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1543.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1521.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1520.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1517.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1514.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1498.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1472.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
1471.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1459.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1443.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1441.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1440.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1434.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1429.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1424.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1418.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1397.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1397.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1395.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1373.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1354.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1353.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1339.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1312.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1292.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1290.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1278.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1277.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1239.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1237.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1235.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1231.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1225.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1217.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1214.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
1210.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1201.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1200.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1180.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1179.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1179.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1155.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1151.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1144.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1141.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1139.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1138.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1129.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1125.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1122.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1121.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1108.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1094.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1084.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1084.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1081.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1063.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1058.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1052.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1051.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1050.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1049.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1049.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1043.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
1037.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1029.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1015.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1011.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
997.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
994.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
992.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
992.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
990.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
989.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
981.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
958.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
956.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
947.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
947.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
946.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
936.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
917.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
912.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
911.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
911.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
907.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
897.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
894.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
894.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
893.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
893.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
891.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
879.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
875.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
866.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
863.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
847.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
841.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
841.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
841.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
839.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
834.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
833.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
829.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
828.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
822.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
820.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
807.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
800.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
799.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
797.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
794.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
786.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
786.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
779.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
779.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
775.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
773.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
763.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
752.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
752.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
738.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
737.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
735.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
734.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
733.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
727.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
720.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
713.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
708.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
704.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
696.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
692.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
684.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
683.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
674.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
672.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
669.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
668.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
659.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
658.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
657.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
657.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
654.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
653.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
653.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
653.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
645.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
634.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
630.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
628.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
626.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
625.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
621.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
619.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
617.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
616.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
615.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
611.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
611.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
604.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
597.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
591.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
591.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
584.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
584.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
577.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
571.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
568.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
551.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
551.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
549.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
543.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
543.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
537.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
528.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
528.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
527.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
517.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
516.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
514.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
511.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
500.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
500.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
484.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
484.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
480.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
477.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
477.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
472.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
470.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
468.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
463.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
458.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
457.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
453.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
448.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
448.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
447.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
446.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
443.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
440.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
430.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
429.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
428.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
425.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
425.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
420.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
414.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
408.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
405.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
399.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
395.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
386.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
379.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
373.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
371.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
360.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
352.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
346.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
346.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
344.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
341.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
341.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
340.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
340.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
337.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
336.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
335.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
326.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
325.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
316.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
315.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
313.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
311.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
308.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
305.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
303.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
299.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
299.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
296.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
295.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
294.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
291.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
291.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
289.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
288.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
283.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
282.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
281.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
269.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
266.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
264.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
260.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
258.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
257.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
245.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
244.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
241.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
233.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
226.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
225.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
223.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
194.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
183.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
176.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
171.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
168.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
165.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
165.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
146.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
137.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
135.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
134.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
131.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
129.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
125.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
110.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
109.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
108.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
82.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
81.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
80.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
73.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
64.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
62.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
53.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
51.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
50.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
49.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
44.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
38.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
29.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
26.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
4.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CFHR1 is validated prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
561.2
Number of samples
231
Samples
Sample
Description
TPM
DO23543
0 years, male, NA, stage:2, alive, 1020 days
1828.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1704.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
1649.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
1609.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
1520.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
1478.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
1471.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1457.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
1436.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
1428.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
1404.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1358.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1219.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
1201.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1196.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
1191.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
1178.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
1156.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
1156.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
1147.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1143.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1134.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
1086.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1083.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
1072.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1072.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
1068.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1049.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
1048.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
1039.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
1020.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
1014.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1010.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
1003.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1000.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
974.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
967.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
952.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
946.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
931.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
910.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
909.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
903.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
898.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
891.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
865.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
864.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
863.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
856.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
848.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
847.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
824.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
820.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
816.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
788.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
786.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
783.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
779.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
778.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
776.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
774.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
763.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
763.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
752.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
750.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
749.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
746.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
742.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
741.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
735.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
732.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
727.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
719.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
718.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
710.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
702.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
700.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
695.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
690.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
689.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
689.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
684.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
682.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
679.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
677.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
673.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
669.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
669.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
655.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
653.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
652.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
648.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
641.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
636.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
632.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
628.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
614.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
613.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
610.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
608.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
608.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
602.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
600.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
590.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
586.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
582.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
577.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
577.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
577.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
572.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
571.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
563.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
556.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
552.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
552.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
546.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
545.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
542.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
541.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
538.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
534.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
534.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
518.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
512.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
491.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
489.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
482.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
482.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
469.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
466.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
450.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
448.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
448.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
447.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
442.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
441.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
439.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
438.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
427.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
426.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
424.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
423.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
423.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
410.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
404.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
385.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
381.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
368.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
366.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
356.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
356.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
356.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
355.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
351.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
349.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
349.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
347.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
346.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
346.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
343.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
341.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
327.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
324.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
319.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
317.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
299.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
285.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
283.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
279.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
253.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
250.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
249.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
238.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
233.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
232.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
228.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
225.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
223.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
215.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
210.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
201.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
200.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
198.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
187.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
184.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
173.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
167.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
151.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
150.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
145.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
140.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
140.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
128.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
95.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
91.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
91.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
81.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
73.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
57.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
56.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
55.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
54.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
40.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
40.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
36.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
32.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
32.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
27.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
27.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
27.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
23.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
1.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
2.0
823
Tumor
1.9
343
Tumor
1.6
527
Tumor
1.3
865
Tumor
1.2
277
Tumor
1.1
877
Tumor
1.0
355
Tumor
1.0
975
Tumor
1.0
977
Tumor
1.0
471
Tumor
0.9
515
Tumor
0.8
192
Normal
0.7
223
Tumor
0.7
455
Tumor
0.7
697
Tumor
0.7
635
Tumor
0.7
863
Tumor
0.6
147
Tumor
0.6
883
Tumor
0.6
881
Tumor
0.6
857
Tumor
0.6
1025
Tumor
0.6
1041
Tumor
0.6
573
Tumor
0.6
135
Tumor
0.6
443
Tumor
0.6
817
Tumor
0.6
777
Tumor
0.6
375
Tumor
0.6
517
Tumor
0.5
141
Tumor
0.5
937
Tumor
0.5
461
Tumor
0.5
744
Normal
0.5
963
Tumor
0.5
647
Tumor
0.4
483
Tumor
0.4
557
Tumor
0.4
525
Tumor
0.4
915
Tumor
0.4
516
Normal
0.3
813
Tumor
0.3
131
Tumor
0.3
921
Tumor
0.3
392
Normal
0.3
755
Tumor
0.3
431
Tumor
0.3
185
Tumor
0.3
957
Tumor
0.3
124
Normal
0.3
445
Tumor
0.3
492
Normal
0.2
922
Normal
0.2
745
Tumor
0.2
545
Tumor
0.2
878
Normal
0.2
981
Tumor
0.2
395
Tumor
0.2
487
Tumor
0.2
112
Tumor
0.2
538
Normal
0.2
943
Tumor
0.2
1015
Tumor
0.1
741
Tumor
0.1
491
Tumor
0.1
938
Normal
0.1
421
Tumor
0.1
716
Normal
0.1
536
Normal
0.1
221
Tumor
0.1
816
Normal
0.1
474
Normal
0.1
785
Tumor
0.0
737
Tumor
0.0
574
Normal
0.0
696
Normal
0.0
227
Tumor
0.0
412
Normal
0.0
342
Normal
0.0
951
Tumor
0.0
257
Tumor
0.0
778
Normal
0.0
452
Normal
0.0
444
Normal
0.0
862
Normal
0.0
1045
Tumor
0.0
484
Normal
0.0
746
Normal
0.0
742
Normal
0.0
111
Normal
0.0
393
Tumor
-0.1
952
Normal
-0.1
953
Tumor
-0.1
497
Tumor
-0.1
695
Tumor
-0.1
911
Tumor
-0.1
914
Normal
-0.1
861
Tumor
-0.1
142
Normal
-0.1
1021
Tumor
-0.1
267
Tumor
-0.1
186
Normal
-0.1
344
Normal
-0.1
866
Normal
-0.1
1026
Normal
-0.1
415
Tumor
-0.1
494
Normal
-0.1
526
Normal
-0.1
434
Normal
-0.2
563
Tumor
-0.2
814
Normal
-0.2
272
Normal
-0.2
955
Tumor
-0.2
394
Normal
-0.2
698
Normal
-0.2
913
Tumor
-0.2
268
Normal
-0.2
523
Tumor
-0.2
924
Normal
-0.2
433
Tumor
-0.2
546
Normal
-0.2
923
Tumor
-0.2
917
Tumor
-0.2
727
Tumor
-0.2
518
Normal
-0.2
396
Normal
-0.2
671
Tumor
-0.2
171
Tumor
-0.2
956
Normal
-0.2
137
Tumor
-0.2
715
Tumor
-0.2
114
Normal
-0.2
662
Normal
-0.2
313
Tumor
-0.2
976
Normal
-0.2
426
Normal
-0.2
352
Normal
-0.2
685
Tumor
-0.2
488
Normal
-0.2
448
Normal
-0.3
663
Tumor
-0.3
874
Normal
-0.3
217
Tumor
-0.3
918
Normal
-0.3
368
Normal
-0.3
738
Normal
-0.3
493
Tumor
-0.3
365
Tumor
-0.3
278
Normal
-0.3
297
Tumor
-0.3
214
Normal
-0.3
213
Tumor
-0.3
195
Tumor
-0.3
1043
Tumor
-0.3
123
Tumor
-0.3
145
Tumor
-0.3
366
Normal
-0.3
436
Normal
-0.3
113
Tumor
-0.3
1031
Tumor
-0.3
224
Normal
-0.3
138
Normal
-0.3
218
Normal
-0.3
473
Tumor
-0.3
383
Tumor
-0.3
1028
Normal
-0.3
391
Tumor
-0.3
422
Normal
-0.3
558
Normal
-0.3
423
Tumor
-0.3
363
Tumor
-0.3
713
Tumor
-0.3
146
Normal
-0.4
427
Tumor
-0.4
191
Tumor
-0.4
882
Normal
-0.4
568
Normal
-0.4
618
Normal
-0.4
615
Tumor
-0.4
554
Normal
-0.4
411
Tumor
-0.4
867
Tumor
-0.4
341
Tumor
-0.4
966
Normal
-0.4
468
Normal
-0.4
1044
Normal
-0.4
451
Tumor
-0.4
533
Tumor
-0.4
686
Normal
-0.4
187
Tumor
-0.4
196
Normal
-0.4
388
Normal
-0.4
572
Normal
-0.4
721
Tumor
-0.4
283
Tumor
-0.4
864
Normal
-0.4
314
Normal
-0.4
535
Tumor
-0.4
361
Tumor
-0.4
136
Normal
-0.4
376
Normal
-0.4
477
Tumor
-0.4
466
Normal
-0.4
564
Normal
-0.4
271
Tumor
-0.4
567
Tumor
-0.5
873
Tumor
-0.5
916
Normal
-0.5
462
Normal
-0.5
432
Normal
-0.5
884
Normal
-0.5
498
Normal
-0.5
222
Normal
-0.5
982
Normal
-0.5
1042
Normal
-0.5
232
Normal
-0.5
858
Normal
-0.5
642
Normal
-0.5
553
Tumor
-0.5
571
Tumor
-0.5
456
Normal
-0.5
958
Normal
-0.5
472
Normal
-0.5
285
Tumor
-0.5
1016
Normal
-0.5
327
Tumor
-0.5
824
Normal
-0.5
636
Normal
-0.5
125
Tumor
-0.5
728
Normal
-0.5
447
Tumor
-0.5
756
Normal
-0.5
128
Normal
-0.5
172
Normal
-0.6
481
Tumor
-0.6
384
Normal
-0.6
132
Normal
-0.6
162
Normal
-0.6
228
Normal
-0.6
852
Normal
-0.6
311
Tumor
-0.6
815
Tumor
-0.6
188
Normal
-0.6
428
Normal
-0.6
482
Normal
-0.6
148
Normal
-0.6
386
Normal
-0.6
534
Normal
-0.6
465
Tumor
-0.6
312
Normal
-0.6
467
Tumor
-0.6
954
Normal
-0.6
944
Normal
-0.7
414
Normal
-0.7
1013
Tumor
-0.7
286
Normal
-0.7
261
Tumor
-0.7
528
Normal
-0.7
851
Tumor
-0.7
1022
Normal
-0.7
513
Tumor
-0.7
786
Normal
-0.7
965
Tumor
-0.7
524
Normal
-0.7
925
Tumor
-0.7
298
Normal
-0.7
435
Tumor
-0.7
258
Normal
-0.7
362
Normal
-0.7
964
Normal
-0.7
514
Normal
-0.7
416
Normal
-0.7
665
Tumor
-0.7
926
Normal
-0.7
353
Tumor
-0.7
284
Normal
-0.7
1032
Normal
-0.7
387
Tumor
-0.7
356
Normal
-0.8
818
Normal
-0.8
424
Normal
-0.8
364
Normal
-0.8
912
Normal
-0.8
328
Normal
-0.8
446
Normal
-0.8
672
Normal
-0.8
161
Tumor
-0.8
868
Normal
-0.8
722
Normal
-0.8
332
Normal
-0.8
1027
Tumor
-0.8
968
Normal
-0.9
1046
Normal
-0.9
367
Tumor
-0.9
212
Normal
-0.9
1014
Normal
-0.9
354
Normal
-0.9
262
Normal
-0.9
628
Normal
-0.9
967
Tumor
-0.9
983
Tumor
-0.9
724
Normal
-0.9
641
Tumor
-0.9
351
Tumor
-0.9
984
Normal
-1.0
714
Normal
-1.0
478
Normal
-1.0
627
Tumor
-1.0
723
Tumor
-1.0
664
Normal
-1.0
978
Normal
-1.0
617
Tumor
-1.0
537
Tumor
-1.0
413
Tumor
-1.1
126
Normal
-1.1
743
Tumor
-1.1
331
Tumor
-1.1
616
Normal
-1.1
231
Tumor
-1.2
211
Tumor
-1.2
358
Normal
-1.2
666
Normal
-1.2
385
Tumor
-1.3
648
Normal
-1.3
463
Tumor
-1.3
127
Tumor
-1.3
357
Tumor
-1.4
464
Normal
-1.4
661
Tumor
-1.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.