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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NFS1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
57.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
44.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
42.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
37.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
36.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
36.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
36.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
35.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
35.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
34.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
34.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
34.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
34.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
34.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
33.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
32.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
32.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
31.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
30.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
29.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
29.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
29.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
29.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
29.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
28.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
27.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
27.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
27.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
26.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
26.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
26.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
25.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
25.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
25.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
25.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
25.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
25.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
24.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
24.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
24.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
24.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
24.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
24.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
24.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
24.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
23.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
23.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
23.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
22.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
22.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
22.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
22.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
22.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
22.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
22.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
22.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
22.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
21.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
21.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
21.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
21.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
20.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
20.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
20.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
20.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
19.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
19.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
19.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
19.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
18.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
18.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
17.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
17.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
17.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
16.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
16.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NFS1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.4
Number of samples
231
Samples
Sample
Description
TPM
DO23552
0 years, female, NA, stage:1, alive, 810 days
54.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
46.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
37.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
36.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
34.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
30.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
30.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
30.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
29.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
29.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
28.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
27.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
27.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
26.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
26.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
26.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
25.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
25.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
25.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
25.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
24.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
24.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
24.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
24.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
23.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
23.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
23.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
22.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
22.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
22.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
22.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
22.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
22.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
22.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
21.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
21.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
21.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
21.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
19.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
19.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
18.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
17.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
16.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
16.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1041
Tumor
1.2
571
Tumor
1.1
465
Tumor
1.0
915
Tumor
1.0
925
Tumor
0.9
435
Tumor
0.9
967
Tumor
0.9
513
Tumor
0.9
171
Tumor
0.8
123
Tumor
0.7
477
Tumor
0.7
487
Tumor
0.7
473
Tumor
0.7
227
Tumor
0.7
695
Tumor
0.7
537
Tumor
0.6
785
Tumor
0.6
483
Tumor
0.6
741
Tumor
0.6
755
Tumor
0.6
1013
Tumor
0.6
937
Tumor
0.5
231
Tumor
0.5
883
Tumor
0.4
865
Tumor
0.4
491
Tumor
0.4
981
Tumor
0.4
557
Tumor
0.4
851
Tumor
0.4
745
Tumor
0.4
877
Tumor
0.4
127
Tumor
0.4
867
Tumor
0.4
267
Tumor
0.4
671
Tumor
0.3
861
Tumor
0.3
367
Tumor
0.3
535
Tumor
0.3
361
Tumor
0.3
1045
Tumor
0.3
493
Tumor
0.3
145
Tumor
0.3
1032
Normal
0.3
172
Normal
0.3
355
Tumor
0.3
911
Tumor
0.3
921
Tumor
0.3
452
Normal
0.3
526
Normal
0.3
553
Tumor
0.3
525
Tumor
0.3
128
Normal
0.3
221
Tumor
0.3
391
Tumor
0.3
517
Tumor
0.3
534
Normal
0.3
515
Tumor
0.2
742
Normal
0.2
635
Tumor
0.2
944
Normal
0.2
1046
Normal
0.2
466
Normal
0.2
685
Tumor
0.2
568
Normal
0.2
363
Tumor
0.2
261
Tumor
0.2
484
Normal
0.2
425
Tumor
0.2
647
Tumor
0.2
786
Normal
0.2
341
Tumor
0.2
864
Normal
0.2
1022
Normal
0.2
112
Tumor
0.2
135
Tumor
0.2
558
Normal
0.2
564
Normal
0.2
1043
Tumor
0.2
868
Normal
0.2
494
Normal
0.2
862
Normal
0.2
451
Tumor
0.2
648
Normal
0.2
663
Tumor
0.2
514
Normal
0.2
727
Tumor
0.2
462
Normal
0.2
474
Normal
0.2
715
Tumor
0.2
328
Normal
0.2
728
Normal
0.2
924
Normal
0.2
356
Normal
0.2
777
Tumor
0.2
686
Normal
0.2
113
Tumor
0.2
1025
Tumor
0.2
922
Normal
0.2
746
Normal
0.2
436
Normal
0.2
563
Tumor
0.2
964
Normal
0.2
464
Normal
0.2
573
Tumor
0.1
572
Normal
0.1
756
Normal
0.1
232
Normal
0.1
1042
Normal
0.1
723
Tumor
0.1
546
Normal
0.1
414
Normal
0.1
965
Tumor
0.1
918
Normal
0.1
567
Tumor
0.1
618
Normal
0.1
191
Tumor
0.1
743
Tumor
0.1
258
Normal
0.1
214
Normal
0.1
698
Normal
0.1
1015
Tumor
0.1
977
Tumor
0.1
866
Normal
0.1
636
Normal
0.1
1016
Normal
0.1
257
Tumor
0.1
738
Normal
0.1
396
Normal
0.1
376
Normal
0.1
953
Tumor
0.1
365
Tumor
0.1
212
Normal
0.1
162
Normal
0.1
554
Normal
0.1
132
Normal
0.1
222
Normal
0.1
497
Tumor
0.1
448
Normal
0.1
432
Normal
0.1
114
Normal
0.1
147
Tumor
0.1
468
Normal
0.1
628
Normal
0.1
284
Normal
0.1
351
Tumor
0.1
412
Normal
0.1
286
Normal
0.1
722
Normal
0.1
1027
Tumor
0.1
196
Normal
0.1
528
Normal
0.1
433
Tumor
0.1
976
Normal
0.1
394
Normal
0.1
666
Normal
0.1
186
Normal
0.1
195
Tumor
0.1
228
Normal
0.1
516
Normal
0.1
518
Normal
0.0
428
Normal
0.0
488
Normal
0.0
368
Normal
0.0
874
Normal
0.0
627
Tumor
0.0
615
Tumor
0.0
716
Normal
0.0
963
Tumor
0.0
952
Normal
0.0
142
Normal
0.0
665
Tumor
0.0
818
Normal
0.0
978
Normal
0.0
185
Tumor
0.0
218
Normal
0.0
388
Normal
0.0
392
Normal
0.0
1014
Normal
0.0
362
Normal
0.0
161
Tumor
0.0
136
Normal
0.0
217
Tumor
0.0
696
Normal
0.0
574
Normal
0.0
912
Normal
0.0
884
Normal
0.0
616
Normal
0.0
538
Normal
0.0
272
Normal
0.0
422
Normal
0.0
858
Normal
0.0
278
Normal
0.0
926
Normal
0.0
954
Normal
0.0
916
Normal
0.0
664
Normal
0.0
873
Tumor
0.0
882
Normal
0.0
472
Normal
0.0
951
Tumor
0.0
426
Normal
0.0
957
Tumor
0.0
148
Normal
0.0
662
Normal
0.0
617
Tumor
0.0
342
Normal
0.0
423
Tumor
0.0
285
Tumor
0.0
982
Normal
0.0
395
Tumor
0.0
463
Tumor
0.0
914
Normal
0.0
482
Normal
0.0
955
Tumor
0.0
387
Tumor
0.0
984
Normal
0.0
1044
Normal
0.0
327
Tumor
0.0
641
Tumor
0.0
968
Normal
0.0
714
Normal
0.0
492
Normal
0.0
913
Tumor
0.0
314
Normal
0.0
817
Tumor
0.0
958
Normal
0.0
446
Normal
-0.1
938
Normal
-0.1
364
Normal
-0.1
724
Normal
-0.1
524
Normal
-0.1
358
Normal
-0.1
213
Tumor
-0.1
672
Normal
-0.1
138
Normal
-0.1
416
Normal
-0.1
824
Normal
-0.1
141
Tumor
-0.1
421
Tumor
-0.1
126
Normal
-0.1
852
Normal
-0.1
262
Normal
-0.1
111
Normal
-0.1
424
Normal
-0.1
1028
Normal
-0.1
415
Tumor
-0.1
545
Tumor
-0.1
386
Normal
-0.1
124
Normal
-0.1
188
Normal
-0.1
313
Tumor
-0.1
366
Normal
-0.1
268
Normal
-0.1
481
Tumor
-0.1
444
Normal
-0.1
778
Normal
-0.1
456
Normal
-0.1
434
Normal
-0.1
187
Tumor
-0.1
298
Normal
-0.1
411
Tumor
-0.1
384
Normal
-0.1
1026
Normal
-0.1
224
Normal
-0.1
713
Tumor
-0.1
744
Normal
-0.1
642
Normal
-0.1
878
Normal
-0.2
332
Normal
-0.2
1021
Tumor
-0.2
352
Normal
-0.2
312
Normal
-0.2
413
Tumor
-0.2
956
Normal
-0.2
277
Tumor
-0.2
137
Tumor
-0.2
271
Tumor
-0.2
223
Tumor
-0.2
383
Tumor
-0.2
881
Tumor
-0.2
445
Tumor
-0.2
536
Normal
-0.2
923
Tumor
-0.2
697
Tumor
-0.2
385
Tumor
-0.2
375
Tumor
-0.2
125
Tumor
-0.2
393
Tumor
-0.2
816
Normal
-0.2
498
Normal
-0.2
353
Tumor
-0.2
131
Tumor
-0.3
354
Normal
-0.3
478
Normal
-0.3
344
Normal
-0.3
983
Tumor
-0.3
823
Tumor
-0.3
357
Tumor
-0.3
146
Normal
-0.3
966
Normal
-0.3
523
Tumor
-0.3
283
Tumor
-0.3
815
Tumor
-0.3
1031
Tumor
-0.3
431
Tumor
-0.3
211
Tumor
-0.3
943
Tumor
-0.3
467
Tumor
-0.3
297
Tumor
-0.3
192
Normal
-0.4
661
Tumor
-0.4
455
Tumor
-0.4
447
Tumor
-0.4
461
Tumor
-0.4
427
Tumor
-0.4
471
Tumor
-0.4
331
Tumor
-0.4
527
Tumor
-0.4
311
Tumor
-0.4
814
Normal
-0.4
975
Tumor
-0.4
533
Tumor
-0.4
813
Tumor
-0.5
737
Tumor
-0.5
857
Tumor
-0.5
917
Tumor
-0.5
863
Tumor
-0.6
443
Tumor
-0.6
721
Tumor
-0.6
343
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
