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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRAF2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
60.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
55.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
46.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
45.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
41.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
37.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
35.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
33.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
33.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
32.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
31.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
30.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
30.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
28.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
25.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
24.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
23.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
23.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
23.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
21.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
20.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
20.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
20.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
19.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
19.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
19.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
18.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
17.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
17.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
17.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
17.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
17.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
16.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
16.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRAF2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.1
Number of samples
231
Samples
Sample
Description
TPM
DO48747
0 years, male, NA, stage:3, alive, 540 days
50.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
30.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
28.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
25.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
24.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
23.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
23.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
21.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
21.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
21.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
18.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
18.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1046
Normal
3.5
535
Tumor
2.4
536
Normal
1.7
1027
Tumor
1.5
311
Tumor
1.1
1043
Tumor
0.9
257
Tumor
0.9
727
Tumor
0.8
313
Tumor
0.8
351
Tumor
0.7
697
Tumor
0.7
863
Tumor
0.7
525
Tumor
0.7
1032
Normal
0.7
357
Tumor
0.6
283
Tumor
0.6
343
Tumor
0.6
647
Tumor
0.6
813
Tumor
0.6
785
Tumor
0.6
261
Tumor
0.6
685
Tumor
0.5
777
Tumor
0.5
571
Tumor
0.5
1041
Tumor
0.5
537
Tumor
0.5
192
Normal
0.5
365
Tumor
0.5
745
Tumor
0.5
171
Tumor
0.5
125
Tumor
0.5
814
Normal
0.5
1026
Normal
0.5
642
Normal
0.5
965
Tumor
0.4
953
Tumor
0.4
915
Tumor
0.4
1013
Tumor
0.4
421
Tumor
0.4
185
Tumor
0.4
877
Tumor
0.4
491
Tumor
0.4
1045
Tumor
0.4
857
Tumor
0.4
513
Tumor
0.4
1028
Normal
0.4
444
Normal
0.4
297
Tumor
0.4
187
Tumor
0.4
137
Tumor
0.4
466
Normal
0.3
384
Normal
0.3
463
Tumor
0.3
188
Normal
0.3
433
Tumor
0.3
545
Tumor
0.3
557
Tumor
0.3
1022
Normal
0.3
161
Tumor
0.3
448
Normal
0.3
977
Tumor
0.3
722
Normal
0.3
615
Tumor
0.3
434
Normal
0.3
414
Normal
0.3
456
Normal
0.3
375
Tumor
0.3
868
Normal
0.3
145
Tumor
0.3
567
Tumor
0.3
191
Tumor
0.3
914
Normal
0.3
696
Normal
0.2
362
Normal
0.2
342
Normal
0.2
376
Normal
0.2
383
Tumor
0.2
672
Normal
0.2
451
Tumor
0.2
268
Normal
0.2
627
Tumor
0.2
636
Normal
0.2
618
Normal
0.2
616
Normal
0.2
756
Normal
0.2
445
Tumor
0.2
883
Tumor
0.2
218
Normal
0.2
663
Tumor
0.2
963
Tumor
0.2
312
Normal
0.2
862
Normal
0.2
435
Tumor
0.2
195
Tumor
0.2
1042
Normal
0.2
223
Tumor
0.2
881
Tumor
0.2
874
Normal
0.2
786
Normal
0.2
746
Normal
0.2
851
Tumor
0.2
671
Tumor
0.2
424
Normal
0.2
361
Tumor
0.2
524
Normal
0.2
728
Normal
0.2
527
Tumor
0.2
573
Tumor
0.2
713
Tumor
0.2
462
Normal
0.2
755
Tumor
0.2
815
Tumor
0.2
884
Normal
0.2
211
Tumor
0.2
873
Tumor
0.2
368
Normal
0.1
1044
Normal
0.1
467
Tumor
0.1
468
Normal
0.1
494
Normal
0.1
554
Normal
0.1
533
Tumor
0.1
366
Normal
0.1
956
Normal
0.1
344
Normal
0.1
482
Normal
0.1
516
Normal
0.1
271
Tumor
0.1
723
Tumor
0.1
478
Normal
0.1
913
Tumor
0.1
1025
Tumor
0.1
427
Tumor
0.1
975
Tumor
0.1
465
Tumor
0.1
648
Normal
0.1
455
Tumor
0.1
686
Normal
0.1
272
Normal
0.1
778
Normal
0.1
388
Normal
0.1
413
Tumor
0.1
464
Normal
0.1
394
Normal
0.1
422
Normal
0.1
214
Normal
0.1
738
Normal
0.1
141
Tumor
0.1
354
Normal
0.1
124
Normal
0.1
514
Normal
0.1
721
Tumor
0.1
262
Normal
0.1
355
Tumor
0.1
923
Tumor
0.1
186
Normal
0.1
976
Normal
0.1
213
Tumor
0.1
396
Normal
0.1
958
Normal
0.1
331
Tumor
0.1
385
Tumor
0.1
823
Tumor
0.1
452
Normal
0.0
428
Normal
0.0
386
Normal
0.0
922
Normal
0.0
327
Tumor
0.0
864
Normal
0.0
852
Normal
0.0
955
Tumor
0.0
432
Normal
0.0
277
Tumor
0.0
924
Normal
0.0
423
Tumor
0.0
564
Normal
0.0
641
Tumor
0.0
228
Normal
0.0
172
Normal
0.0
436
Normal
0.0
926
Normal
0.0
488
Normal
0.0
162
Normal
0.0
135
Tumor
0.0
446
Normal
0.0
393
Tumor
0.0
917
Tumor
0.0
878
Normal
0.0
628
Normal
0.0
284
Normal
0.0
352
Normal
0.0
224
Normal
0.0
938
Normal
0.0
472
Normal
0.0
744
Normal
0.0
148
Normal
0.0
742
Normal
0.0
498
Normal
0.0
492
Normal
0.0
918
Normal
0.0
415
Tumor
0.0
447
Tumor
0.0
866
Normal
0.0
426
Normal
0.0
147
Tumor
0.0
258
Normal
0.0
943
Tumor
0.0
474
Normal
0.0
285
Tumor
0.0
741
Tumor
0.0
1031
Tumor
-0.1
518
Normal
-0.1
617
Tumor
-0.1
353
Tumor
-0.1
716
Normal
-0.1
968
Normal
-0.1
954
Normal
-0.1
364
Normal
-0.1
816
Normal
-0.1
227
Tumor
-0.1
395
Tumor
-0.1
983
Tumor
-0.1
212
Normal
-0.1
328
Normal
-0.1
392
Normal
-0.1
865
Tumor
-0.1
217
Tumor
-0.1
912
Normal
-0.1
662
Normal
-0.1
523
Tumor
-0.1
483
Tumor
-0.1
944
Normal
-0.1
966
Normal
-0.1
574
Normal
-0.1
558
Normal
-0.1
356
Normal
-0.1
126
Normal
-0.1
957
Tumor
-0.1
817
Tumor
-0.1
196
Normal
-0.1
231
Tumor
-0.1
387
Tumor
-0.1
138
Normal
-0.1
127
Tumor
-0.1
715
Tumor
-0.1
937
Tumor
-0.1
443
Tumor
-0.1
132
Normal
-0.1
341
Tumor
-0.1
114
Normal
-0.1
952
Normal
-0.1
416
Normal
-0.1
568
Normal
-0.1
425
Tumor
-0.2
286
Normal
-0.2
487
Tumor
-0.2
332
Normal
-0.2
818
Normal
-0.2
314
Normal
-0.2
142
Normal
-0.2
232
Normal
-0.2
363
Tumor
-0.2
861
Tumor
-0.2
984
Normal
-0.2
538
Normal
-0.2
916
Normal
-0.2
221
Tumor
-0.2
146
Normal
-0.2
278
Normal
-0.2
431
Tumor
-0.2
867
Tumor
-0.2
128
Normal
-0.2
517
Tumor
-0.2
412
Normal
-0.2
882
Normal
-0.2
484
Normal
-0.2
925
Tumor
-0.2
572
Normal
-0.2
411
Tumor
-0.2
515
Tumor
-0.2
1015
Tumor
-0.2
911
Tumor
-0.2
367
Tumor
-0.2
546
Normal
-0.2
714
Normal
-0.3
661
Tumor
-0.3
358
Normal
-0.3
724
Normal
-0.3
298
Normal
-0.3
526
Normal
-0.3
481
Tumor
-0.3
695
Tumor
-0.3
563
Tumor
-0.3
635
Tumor
-0.3
981
Tumor
-0.3
978
Normal
-0.3
553
Tumor
-0.3
664
Normal
-0.3
534
Normal
-0.3
112
Tumor
-0.3
666
Normal
-0.3
698
Normal
-0.3
967
Tumor
-0.3
858
Normal
-0.3
136
Normal
-0.3
1021
Tumor
-0.3
113
Tumor
-0.3
1014
Normal
-0.3
964
Normal
-0.3
461
Tumor
-0.3
391
Tumor
-0.4
982
Normal
-0.4
267
Tumor
-0.4
222
Normal
-0.4
921
Tumor
-0.4
131
Tumor
-0.4
471
Tumor
-0.5
493
Tumor
-0.5
111
Normal
-0.5
737
Tumor
-0.5
528
Normal
-0.5
951
Tumor
-0.5
123
Tumor
-0.5
477
Tumor
-0.6
743
Tumor
-0.6
824
Normal
-0.6
1016
Normal
-0.6
497
Tumor
-0.7
665
Tumor
-0.8
473
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
