MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.9 nTPM
HPA Brain:0.6 nTPM
GTEx:17.9 nTPM
FANTOM5:40.6 Scaled Tags Per Million
Pig:15.5 nTPM
Mouse:0.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 0.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 0.2
1830 Male, age 51, unknown 0.4
1827 Male, age 72, unknown 0.3
1833 Male, age 53, unknown 0.3
1870 Female, age 42, unknown 0.2
2019 Male, age 18, unknown 0.2
2828 Female, age 72, unknown 0.2
2219 Male, age 76, both hemispheres 0.1
2411 Female, age 72, unknown 0.1
2586 Male, age 75, left hemisphere 0.1
2666 Male, age 74, left hemisphere 0.1
Dorsal raphe nucleus
nTPM: 0.6
2298 Female, age 72, unknown 2.2
1828 Male, age 53, unknown 0.3
2047 Male, age 72, unknown 0.3
2016 Female, age 72, unknown 0.2
2750 Male, age 76, both hemispheres 0.1
Inferior colliculus
nTPM: 0.3
2097 Female, age 72, unknown 0.6
1890 Male, age 53, unknown 0.3
2849 Male, age 72, unknown 0.3
1848 Female, age 42, unknown 0.2
Median raphe nucleus
nTPM: 0.1
2220 Male, age 76, midline 0.1
Periaquaductal grey, anterior
nTPM: 0.1
1947 Male, age 18, unknown 0.2
2502 Female, age 75, unknown 0.2
1795 Male, age 51, unknown 0.0
Periaquaductal grey, dorsal
nTPM: 0.2
1831 Male, age 72, unknown 0.3
1840 Male, age 53, unknown 0.3
2850 Male, age 76, both hemispheres 0.1
2464 Female, age 72, unknown 0.0
Periaquaductal grey, lateral
nTPM: 0.1
2053 Male, age 18, unknown 0.2
2140 Male, age 76, both hemispheres 0.1
2272 Male, age 74, both hemispheres 0.1
Pretectal area
nTPM: 0.3
2224 Female, age 72, unknown 0.7
2407 Male, age 75, both hemispheres 0.6
1815 Male, age 53, unknown 0.3
2007 Male, age 72, unknown 0.3
1817 Female, age 42, unknown 0.2
1944 Female, age 72, unknown 0.2
2667 Female, age 75, unknown 0.2
2825 Male, age 18, unknown 0.2
2273 Male, age 74, both hemispheres 0.1
2316 Male, age 76, right hemisphere 0.1
1816 Male, age 51, unknown 0.0
Red nucleus
nTPM: 0.2
2503 Female, age 72, unknown 0.8
1865 Male, age 51, unknown 0.3
1904 Male, age 53, unknown 0.3
2227 Male, age 72, unknown 0.3
2769 Male, age 72, unknown 0.3
1821 Female, age 72, unknown 0.2
1954 Female, age 42, unknown 0.2
2725 Female, age 75, unknown 0.2
2785 Male, age 18, unknown 0.2
2584 Male, age 75, left hemisphere 0.1
2588 Male, age 74, left hemisphere 0.1
2823 Male, age 76, right hemisphere 0.1
Substantia nigra
nTPM: 0.4
2409 Female, age 72, unknown 2.2
1851 Male, age 51, unknown 0.7
1941 Male, age 53, unknown 0.3
2241 Male, age 72, unknown 0.3
1889 Female, age 72, unknown 0.2
1916 Female, age 42, unknown 0.2
2590 Female, age 75, unknown 0.2
2699 Male, age 18, unknown 0.2
2583 Male, age 75, right hemisphere 0.1
2665 Male, age 74, both hemispheres 0.1
Superior colliculus
nTPM: 0.2
1796 Male, age 53, unknown 0.3
1839 Male, age 51, unknown 0.3
1995 Male, age 72, unknown 0.3
1913 Female, age 42, unknown 0.2
2087 Female, age 72, unknown 0.2
2261 Male, age 18, unknown 0.2
2668 Female, age 75, unknown 0.2
1895 Male, age 76, right hemisphere 0.1
2587 Male, age 74, left hemisphere 0.1
2664 Male, age 75, both hemispheres 0.1
Ventral tegmental area
nTPM: 0.4
2410 Female, age 72, unknown 1.1
1942 Male, age 51, unknown 0.4
2021 Male, age 53, unknown 0.3
1915 Female, age 42, unknown 0.2
2223 Female, age 72, unknown 0.2
2218 Male, age 76, both hemispheres 0.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.9
Samples: 139

Max nTPM: 83.2
Min nTPM: 1.0
Std nTPM: 14.7
Median nTPM: 12.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 83.2
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 77.7
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 65.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 64.8
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 49.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 46.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 46.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 46.3
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 44.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 42.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 40.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 40.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 40.6
FF:10158-103A5 76 years, female 40.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 15.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.5
Samples: 4

Max nTPM: 17.5
Min nTPM: 13.4
Sample A Female 13.4
Sample B Female 17.5
Sample C Male 13.6
Sample D Male 17.5
Midbrain
nTPM: 12.4
Samples: 4

Max nTPM: 15.5
Min nTPM: 8.3
Sample A Female 15.5
Sample B Female 15.3
Sample C Male 8.3
Sample D Male 10.4
Periaqueductal gray
nTPM: 15.3
Samples: 3

Max nTPM: 15.7
Min nTPM: 14.7
Sample B Female 15.7
Sample C Male 15.5
Sample D Male 14.7
Superior colliculi
nTPM: 11.2
Samples: 4

Max nTPM: 12.0
Min nTPM: 10.3
Sample A Female 11.1
Sample B Female 10.3
Sample C Male 11.3
Sample D Male 12.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.1
Sample A Male 0.2
Sample B Male 0.1
Sample C Female 0.3
Sample D Female 0.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68076897 Antisense, RP_040923_02_H11, Mouse strain C57BL/6J (56 days, male) 0.1
71764691 Antisense, RP_050926_01_F06, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 0.1
68076897 Antisense, RP_040923_02_H11, Mouse strain C57BL/6J (56 days, male) 0.1
71764691 Antisense, RP_050926_01_F06, Mouse strain C57BL/6J (56 days, male) 0.0

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