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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PEG10 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
671.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
575.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
526.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
452.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
340.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
331.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
327.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
227.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
211.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
205.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
204.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
193.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
184.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
178.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
175.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
170.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
168.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
154.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
151.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
147.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
130.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
119.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
118.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
108.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
103.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
91.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
87.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
85.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
82.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
79.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
75.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
75.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
74.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
71.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
70.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
70.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
64.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
63.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
63.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
59.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
58.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
55.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
55.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
50.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
47.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
47.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
46.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
46.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
45.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
45.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
44.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
44.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
41.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
41.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
40.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
39.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
36.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
36.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
36.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
36.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
35.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
35.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
31.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
28.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
28.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
28.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
27.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
26.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
25.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
22.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
22.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
21.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
19.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
18.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
17.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
14.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
3.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
2.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
2.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PEG10 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
48.9
Number of samples
231
Samples
Sample
Description
TPM
DO50820
0 years, female, NA, stage:3, alive, 510 days
1408.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
710.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
624.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
469.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
452.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
386.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
335.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
332.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
330.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
324.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
314.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
307.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
291.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
250.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
221.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
199.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
181.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
167.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
149.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
146.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
140.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
121.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
116.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
114.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
112.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
108.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
106.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
97.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
93.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
92.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
84.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
82.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
80.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
76.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
74.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
71.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
69.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
67.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
64.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
62.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
62.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
60.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
60.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
57.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
54.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
54.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
47.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
46.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
45.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
45.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
41.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
41.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
41.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
40.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
40.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
40.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
38.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
38.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
36.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
36.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
33.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
31.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
31.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
25.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
25.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
23.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
23.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
22.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
21.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
20.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
20.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
19.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
18.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
3.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
2.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
1.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
1.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
1.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
1.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
147
Tumor
2.8
473
Tumor
2.7
641
Tumor
2.7
865
Tumor
2.6
221
Tumor
2.6
285
Tumor
2.5
967
Tumor
2.2
921
Tumor
2.1
463
Tumor
2.1
737
Tumor
2.0
1031
Tumor
1.9
517
Tumor
1.9
965
Tumor
1.9
271
Tumor
1.9
951
Tumor
1.9
745
Tumor
1.8
877
Tumor
1.7
363
Tumor
1.7
1025
Tumor
1.6
1027
Tumor
1.5
425
Tumor
1.5
131
Tumor
1.5
727
Tumor
1.4
257
Tumor
1.4
365
Tumor
1.3
112
Tumor
1.3
863
Tumor
1.1
537
Tumor
1.1
277
Tumor
1.1
391
Tumor
1.1
1021
Tumor
1.1
553
Tumor
1.1
471
Tumor
1.0
943
Tumor
1.0
515
Tumor
1.0
123
Tumor
0.9
881
Tumor
0.9
413
Tumor
0.8
663
Tumor
0.8
283
Tumor
0.8
483
Tumor
0.7
351
Tumor
0.7
671
Tumor
0.7
435
Tumor
0.7
213
Tumor
0.7
443
Tumor
0.6
661
Tumor
0.6
617
Tumor
0.6
387
Tumor
0.5
415
Tumor
0.5
217
Tumor
0.5
341
Tumor
0.4
331
Tumor
0.4
983
Tumor
0.4
1043
Tumor
0.4
227
Tumor
0.4
975
Tumor
0.4
171
Tumor
0.3
815
Tumor
0.3
477
Tumor
0.3
433
Tumor
0.3
977
Tumor
0.3
222
Normal
0.2
497
Tumor
0.1
421
Tumor
0.0
533
Tumor
0.0
455
Tumor
0.0
125
Tumor
0.0
647
Tumor
0.0
724
Normal
-0.1
272
Normal
-0.1
445
Tumor
-0.1
286
Normal
-0.1
161
Tumor
-0.1
357
Tumor
-0.1
964
Normal
-0.2
642
Normal
-0.2
968
Normal
-0.2
923
Tumor
-0.2
866
Normal
-0.2
148
Normal
-0.2
464
Normal
-0.2
461
Tumor
-0.2
192
Normal
-0.3
963
Tumor
-0.3
185
Tumor
-0.3
186
Normal
-0.3
481
Tumor
-0.3
332
Normal
-0.3
431
Tumor
-0.3
738
Normal
-0.3
424
Normal
-0.3
1042
Normal
-0.3
232
Normal
-0.3
864
Normal
-0.3
976
Normal
-0.4
223
Tumor
-0.4
258
Normal
-0.4
188
Normal
-0.4
172
Normal
-0.4
313
Tumor
-0.4
393
Tumor
-0.4
162
Normal
-0.4
493
Tumor
-0.4
966
Normal
-0.4
214
Normal
-0.4
1032
Normal
-0.4
873
Tumor
-0.4
224
Normal
-0.4
262
Normal
-0.4
728
Normal
-0.4
958
Normal
-0.4
375
Tumor
-0.4
196
Normal
-0.4
416
Normal
-0.5
635
Tumor
-0.5
187
Tumor
-0.5
867
Tumor
-0.5
361
Tumor
-0.5
428
Normal
-0.5
312
Normal
-0.5
742
Normal
-0.5
723
Tumor
-0.5
952
Normal
-0.5
535
Tumor
-0.5
777
Tumor
-0.5
218
Normal
-0.5
472
Normal
-0.5
743
Tumor
-0.5
124
Normal
-0.5
284
Normal
-0.5
744
Normal
-0.6
314
Normal
-0.6
534
Normal
-0.6
352
Normal
-0.6
297
Tumor
-0.6
426
Normal
-0.6
672
Normal
-0.6
456
Normal
-0.6
268
Normal
-0.6
414
Normal
-0.6
944
Normal
-0.6
911
Tumor
-0.6
528
Normal
-0.6
868
Normal
-0.6
228
Normal
-0.6
883
Tumor
-0.6
554
Normal
-0.6
1022
Normal
-0.6
1016
Normal
-0.6
1026
Normal
-0.6
546
Normal
-0.6
545
Tumor
-0.6
482
Normal
-0.6
212
Normal
-0.7
474
Normal
-0.7
422
Normal
-0.7
362
Normal
-0.7
862
Normal
-0.7
874
Normal
-0.7
618
Normal
-0.7
491
Tumor
-0.7
527
Tumor
-0.7
662
Normal
-0.7
366
Normal
-0.7
195
Tumor
-0.7
538
Normal
-0.7
423
Tumor
-0.7
956
Normal
-0.7
746
Normal
-0.7
191
Tumor
-0.7
494
Normal
-0.7
741
Tumor
-0.7
267
Tumor
-0.7
664
Normal
-0.7
111
Normal
-0.8
518
Normal
-0.8
938
Normal
-0.8
1028
Normal
-0.8
137
Tumor
-0.8
488
Normal
-0.8
311
Tumor
-0.8
127
Tumor
-0.8
298
Normal
-0.8
563
Tumor
-0.8
484
Normal
-0.8
444
Normal
-0.8
136
Normal
-0.8
884
Normal
-0.8
957
Tumor
-0.8
954
Normal
-0.8
278
Normal
-0.8
882
Normal
-0.8
132
Normal
-0.8
516
Normal
-0.8
665
Tumor
-0.9
468
Normal
-0.9
261
Tumor
-0.9
368
Normal
-0.9
487
Tumor
-0.9
648
Normal
-0.9
427
Tumor
-0.9
914
Normal
-0.9
384
Normal
-0.9
982
Normal
-0.9
1041
Tumor
-0.9
231
Tumor
-0.9
666
Normal
-0.9
636
Normal
-0.9
1014
Normal
-0.9
126
Normal
-0.9
436
Normal
-0.9
514
Normal
-0.9
367
Tumor
-0.9
526
Normal
-0.9
912
Normal
-0.9
386
Normal
-0.9
984
Normal
-0.9
114
Normal
-0.9
452
Normal
-0.9
492
Normal
-0.9
376
Normal
-0.9
113
Tumor
-0.9
498
Normal
-0.9
451
Tumor
-0.9
922
Normal
-0.9
128
Normal
-0.9
466
Normal
-1.0
478
Normal
-1.0
135
Tumor
-1.0
396
Normal
-1.0
146
Normal
-1.0
955
Tumor
-1.0
978
Normal
-1.0
385
Tumor
-1.0
813
Tumor
-1.0
394
Normal
-1.0
462
Normal
-1.0
388
Normal
-1.0
446
Normal
-1.0
343
Tumor
-1.0
513
Tumor
-1.0
432
Normal
-1.0
616
Normal
-1.1
953
Tumor
-1.1
628
Normal
-1.1
823
Tumor
-1.1
145
Tumor
-1.1
524
Normal
-1.1
627
Tumor
-1.1
465
Tumor
-1.1
353
Tumor
-1.1
142
Normal
-1.1
138
Normal
-1.1
615
Tumor
-1.1
342
Normal
-1.2
755
Tumor
-1.2
915
Tumor
-1.2
392
Normal
-1.2
878
Normal
-1.2
358
Normal
-1.2
756
Normal
-1.2
523
Tumor
-1.3
981
Tumor
-1.3
354
Normal
-1.3
786
Normal
-1.3
937
Tumor
-1.3
1015
Tumor
-1.3
364
Normal
-1.3
917
Tumor
-1.3
434
Normal
-1.3
383
Tumor
-1.3
467
Tumor
-1.3
918
Normal
-1.4
211
Tumor
-1.4
926
Normal
-1.4
1013
Tumor
-1.4
913
Tumor
-1.4
861
Tumor
-1.4
356
Normal
-1.4
525
Tumor
-1.4
924
Normal
-1.4
778
Normal
-1.4
698
Normal
-1.4
818
Normal
-1.4
1046
Normal
-1.4
344
Normal
-1.4
814
Normal
-1.5
328
Normal
-1.5
395
Tumor
-1.5
412
Normal
-1.5
1045
Tumor
-1.5
141
Tumor
-1.5
817
Tumor
-1.6
447
Tumor
-1.7
852
Normal
-1.7
574
Normal
-1.7
564
Normal
-1.7
355
Tumor
-1.7
411
Tumor
-1.8
824
Normal
-1.8
785
Tumor
-1.8
571
Tumor
-1.8
327
Tumor
-1.9
568
Normal
-1.9
572
Normal
-1.9
916
Normal
-2.0
448
Normal
-2.1
1044
Normal
-2.1
721
Tumor
-2.1
714
Normal
-2.1
536
Normal
-2.2
858
Normal
-2.2
558
Normal
-2.2
573
Tumor
-2.2
697
Tumor
-2.3
557
Tumor
-2.4
567
Tumor
-2.4
816
Normal
-2.5
715
Tumor
-2.5
925
Tumor
-2.6
851
Tumor
-2.7
857
Tumor
-2.7
722
Normal
-2.7
713
Tumor
-2.9
716
Normal
-3.3
685
Tumor
-3.5
696
Normal
-3.6
695
Tumor
-3.6
686
Normal
-4.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
