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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HOGA1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
69.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
47.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
42.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
39.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
39.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
36.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
36.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
35.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
35.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
34.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
34.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
34.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
33.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
33.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
32.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
32.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
32.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
31.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
31.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
31.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
30.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
30.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
29.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
29.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
29.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
28.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
28.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
28.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
28.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
28.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
28.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
28.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
27.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
26.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
26.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
26.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
25.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
25.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
24.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
24.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
24.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
24.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
24.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
23.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
23.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
22.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
22.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
22.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
21.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
21.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
21.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
20.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
20.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
20.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
19.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
19.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
18.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
17.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
17.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
16.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
14.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
14.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
14.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
13.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
7.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
4.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
2.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HOGA1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.9
Number of samples
231
Samples
Sample
Description
TPM
DO48719
0 years, male, NA, stage:2, alive, 690 days
62.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
56.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
39.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
34.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
33.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
29.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
28.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
26.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
25.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
23.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
22.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
19.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
18.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
16.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
4.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
3.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
3.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
3.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
3.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
2.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
2.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
2.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
2.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
2.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
2.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
2.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
2.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
2.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
2.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
2.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
1.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
1.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
1.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
1.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
1.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
1.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
128
Normal
1.7
862
Normal
1.6
342
Normal
1.5
698
Normal
1.4
636
Normal
1.3
484
Normal
1.3
915
Tumor
1.3
436
Normal
1.2
981
Tumor
1.2
1046
Normal
1.2
648
Normal
1.2
232
Normal
1.2
756
Normal
1.1
462
Normal
1.1
944
Normal
1.1
1045
Tumor
1.1
222
Normal
1.1
744
Normal
1.1
742
Normal
1.1
186
Normal
1.1
878
Normal
1.1
818
Normal
1.1
356
Normal
1.0
914
Normal
1.0
723
Tumor
1.0
332
Normal
1.0
227
Tumor
1.0
394
Normal
1.0
912
Normal
1.0
786
Normal
1.0
428
Normal
1.0
824
Normal
1.0
924
Normal
1.0
488
Normal
1.0
618
Normal
1.0
938
Normal
1.0
172
Normal
1.0
298
Normal
0.9
964
Normal
0.9
568
Normal
0.9
132
Normal
0.9
448
Normal
0.9
162
Normal
0.9
1016
Normal
0.9
922
Normal
0.9
858
Normal
0.8
616
Normal
0.8
432
Normal
0.8
414
Normal
0.8
278
Normal
0.8
376
Normal
0.8
866
Normal
0.8
1022
Normal
0.8
666
Normal
0.8
884
Normal
0.8
452
Normal
0.8
358
Normal
0.8
482
Normal
0.8
426
Normal
0.8
1014
Normal
0.8
746
Normal
0.8
572
Normal
0.8
142
Normal
0.8
388
Normal
0.8
696
Normal
0.8
148
Normal
0.8
366
Normal
0.8
1032
Normal
0.7
911
Tumor
0.7
864
Normal
0.7
664
Normal
0.7
344
Normal
0.7
816
Normal
0.7
714
Normal
0.7
196
Normal
0.7
954
Normal
0.7
314
Normal
0.7
526
Normal
0.7
354
Normal
0.7
138
Normal
0.7
1026
Normal
0.7
466
Normal
0.7
716
Normal
0.7
424
Normal
0.7
364
Normal
0.7
396
Normal
0.6
722
Normal
0.6
494
Normal
0.6
1044
Normal
0.6
882
Normal
0.6
1028
Normal
0.6
546
Normal
0.6
113
Tumor
0.6
642
Normal
0.6
464
Normal
0.6
628
Normal
0.6
111
Normal
0.6
392
Normal
0.6
228
Normal
0.6
976
Normal
0.6
978
Normal
0.6
728
Normal
0.6
534
Normal
0.5
564
Normal
0.5
574
Normal
0.5
738
Normal
0.5
352
Normal
0.5
662
Normal
0.5
468
Normal
0.5
686
Normal
0.5
214
Normal
0.5
514
Normal
0.5
1041
Tumor
0.5
982
Normal
0.5
272
Normal
0.4
284
Normal
0.4
537
Tumor
0.4
412
Normal
0.4
851
Tumor
0.4
528
Normal
0.4
672
Normal
0.4
258
Normal
0.4
472
Normal
0.4
984
Normal
0.4
554
Normal
0.4
127
Tumor
0.4
1042
Normal
0.4
146
Normal
0.4
422
Normal
0.4
874
Normal
0.4
114
Normal
0.4
218
Normal
0.4
362
Normal
0.4
286
Normal
0.3
328
Normal
0.3
384
Normal
0.3
778
Normal
0.3
416
Normal
0.3
516
Normal
0.3
958
Normal
0.3
456
Normal
0.3
518
Normal
0.3
852
Normal
0.3
627
Tumor
0.3
124
Normal
0.3
558
Normal
0.3
918
Normal
0.3
481
Tumor
0.3
465
Tumor
0.3
434
Normal
0.3
212
Normal
0.2
137
Tumor
0.2
538
Normal
0.2
224
Normal
0.2
968
Normal
0.2
916
Normal
0.2
262
Normal
0.2
966
Normal
0.2
956
Normal
0.2
868
Normal
0.2
136
Normal
0.2
474
Normal
0.2
312
Normal
0.1
368
Normal
0.1
492
Normal
0.1
386
Normal
0.1
413
Tumor
0.1
952
Normal
0.0
953
Tumor
0.0
926
Normal
0.0
361
Tumor
0.0
967
Tumor
0.0
524
Normal
0.0
126
Normal
0.0
498
Normal
-0.1
261
Tumor
-0.1
444
Normal
-0.1
513
Tumor
-0.1
268
Normal
-0.1
192
Normal
-0.2
1043
Tumor
-0.2
857
Tumor
-0.2
451
Tumor
-0.2
188
Normal
-0.2
145
Tumor
-0.3
571
Tumor
-0.3
867
Tumor
-0.3
327
Tumor
-0.4
785
Tumor
-0.4
536
Normal
-0.4
363
Tumor
-0.4
446
Normal
-0.4
217
Tumor
-0.5
755
Tumor
-0.5
943
Tumor
-0.5
447
Tumor
-0.6
741
Tumor
-0.6
415
Tumor
-0.6
1025
Tumor
-0.6
393
Tumor
-0.6
743
Tumor
-0.6
713
Tumor
-0.6
873
Tumor
-0.6
685
Tumor
-0.6
823
Tumor
-0.6
955
Tumor
-0.7
695
Tumor
-0.7
1027
Tumor
-0.7
937
Tumor
-0.7
341
Tumor
-0.7
131
Tumor
-0.7
411
Tumor
-0.7
478
Normal
-0.8
715
Tumor
-0.8
391
Tumor
-0.8
185
Tumor
-0.8
461
Tumor
-0.9
367
Tumor
-0.9
665
Tumor
-0.9
615
Tumor
-0.9
491
Tumor
-0.9
814
Normal
-0.9
1031
Tumor
-1.0
483
Tumor
-1.0
297
Tumor
-1.0
721
Tumor
-1.0
881
Tumor
-1.1
195
Tumor
-1.1
1015
Tumor
-1.1
423
Tumor
-1.1
365
Tumor
-1.1
187
Tumor
-1.1
357
Tumor
-1.1
421
Tumor
-1.1
383
Tumor
-1.1
161
Tumor
-1.1
353
Tumor
-1.2
963
Tumor
-1.2
267
Tumor
-1.2
641
Tumor
-1.2
487
Tumor
-1.3
617
Tumor
-1.3
563
Tumor
-1.3
141
Tumor
-1.3
727
Tumor
-1.3
567
Tumor
-1.3
983
Tumor
-1.3
977
Tumor
-1.3
921
Tumor
-1.4
355
Tumor
-1.4
883
Tumor
-1.4
112
Tumor
-1.4
861
Tumor
-1.4
923
Tumor
-1.4
343
Tumor
-1.4
877
Tumor
-1.4
553
Tumor
-1.4
171
Tumor
-1.4
917
Tumor
-1.4
815
Tumor
-1.4
517
Tumor
-1.4
975
Tumor
-1.4
1013
Tumor
-1.4
557
Tumor
-1.5
435
Tumor
-1.5
477
Tumor
-1.5
913
Tumor
-1.5
331
Tumor
-1.5
471
Tumor
-1.5
191
Tumor
-1.5
515
Tumor
-1.5
671
Tumor
-1.5
223
Tumor
-1.5
147
Tumor
-1.5
697
Tumor
-1.5
635
Tumor
-1.5
135
Tumor
-1.6
427
Tumor
-1.6
431
Tumor
-1.6
271
Tumor
-1.6
125
Tumor
-1.7
965
Tumor
-1.7
813
Tumor
-1.7
375
Tumor
-1.7
527
Tumor
-1.7
425
Tumor
-1.7
525
Tumor
-1.7
523
Tumor
-1.7
213
Tumor
-1.7
745
Tumor
-1.7
493
Tumor
-1.7
535
Tumor
-1.7
231
Tumor
-1.7
211
Tumor
-1.7
497
Tumor
-1.7
647
Tumor
-1.7
221
Tumor
-1.7
863
Tumor
-1.8
311
Tumor
-1.8
433
Tumor
-1.8
285
Tumor
-1.8
463
Tumor
-1.8
663
Tumor
-1.8
123
Tumor
-1.8
473
Tumor
-1.8
467
Tumor
-1.8
925
Tumor
-1.8
277
Tumor
-1.8
573
Tumor
-1.8
777
Tumor
-1.8
387
Tumor
-1.8
533
Tumor
-1.8
313
Tumor
-1.8
351
Tumor
-1.8
817
Tumor
-1.8
395
Tumor
-1.9
957
Tumor
-1.9
257
Tumor
-1.9
455
Tumor
-1.9
445
Tumor
-2.0
283
Tumor
-2.0
1021
Tumor
-2.0
545
Tumor
-2.0
443
Tumor
-2.0
661
Tumor
-2.1
385
Tumor
-2.1
865
Tumor
-2.1
724
Normal
-2.2
737
Tumor
-2.2
951
Tumor
-2.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
