We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PISD is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
22.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
5.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
3.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
3.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
3.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
3.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
3.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
3.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
2.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
2.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
2.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
2.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
2.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
2.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
2.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
2.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
2.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
2.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
2.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
2.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
2.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PISD is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.7
Number of samples
231
Samples
Sample
Description
TPM
DO45249
0 years, male, NA, stage:1, alive, 630 days
80.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
36.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
34.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
32.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
31.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
31.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
28.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
28.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
26.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
25.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
25.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
25.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
25.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
25.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
25.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
24.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
24.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
19.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
19.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
19.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.6
341
Tumor
1.2
1045
Tumor
1.1
925
Tumor
1.1
443
Tumor
0.9
477
Tumor
0.9
513
Tumor
0.9
937
Tumor
0.8
873
Tumor
0.8
745
Tumor
0.8
1027
Tumor
0.7
615
Tumor
0.7
571
Tumor
0.6
231
Tumor
0.6
465
Tumor
0.6
921
Tumor
0.5
112
Tumor
0.5
641
Tumor
0.5
727
Tumor
0.5
436
Normal
0.5
127
Tumor
0.4
695
Tumor
0.4
737
Tumor
0.4
421
Tumor
0.4
533
Tumor
0.4
331
Tumor
0.4
487
Tumor
0.4
818
Normal
0.4
257
Tumor
0.4
537
Tumor
0.4
367
Tumor
0.4
967
Tumor
0.4
452
Normal
0.4
535
Tumor
0.4
186
Normal
0.4
955
Tumor
0.4
1015
Tumor
0.4
1031
Tumor
0.3
981
Tumor
0.3
515
Tumor
0.3
858
Normal
0.3
628
Normal
0.3
446
Normal
0.3
851
Tumor
0.3
862
Normal
0.3
884
Normal
0.3
883
Tumor
0.3
824
Normal
0.3
915
Tumor
0.3
223
Tumor
0.3
618
Normal
0.3
473
Tumor
0.3
922
Normal
0.3
852
Normal
0.3
426
Normal
0.3
171
Tumor
0.3
685
Tumor
0.3
517
Tumor
0.3
462
Normal
0.3
342
Normal
0.3
472
Normal
0.3
435
Tumor
0.3
145
Tumor
0.3
218
Normal
0.3
147
Tumor
0.3
874
Normal
0.3
868
Normal
0.3
137
Tumor
0.3
448
Normal
0.2
258
Normal
0.2
482
Normal
0.2
432
Normal
0.2
425
Tumor
0.2
481
Tumor
0.2
642
Normal
0.2
185
Tumor
0.2
785
Tumor
0.2
866
Normal
0.2
563
Tumor
0.2
123
Tumor
0.2
388
Normal
0.2
172
Normal
0.2
221
Tumor
0.2
196
Normal
0.2
461
Tumor
0.2
464
Normal
0.2
222
Normal
0.2
395
Tumor
0.2
358
Normal
0.2
616
Normal
0.2
392
Normal
0.2
363
Tumor
0.2
723
Tumor
0.2
433
Tumor
0.2
534
Normal
0.2
636
Normal
0.2
648
Normal
0.2
368
Normal
0.2
953
Tumor
0.2
124
Normal
0.2
148
Normal
0.2
635
Tumor
0.2
911
Tumor
0.2
944
Normal
0.2
451
Tumor
0.2
952
Normal
0.2
423
Tumor
0.2
344
Normal
0.2
912
Normal
0.2
445
Tumor
0.2
786
Normal
0.2
141
Tumor
0.1
297
Tumor
0.1
755
Tumor
0.1
365
Tumor
0.1
394
Normal
0.1
514
Normal
0.1
1046
Normal
0.1
528
Normal
0.1
278
Normal
0.1
113
Tumor
0.1
414
Normal
0.1
857
Tumor
0.1
424
Normal
0.1
361
Tumor
0.1
525
Tumor
0.1
396
Normal
0.1
1022
Normal
0.1
376
Normal
0.1
882
Normal
0.1
716
Normal
0.1
738
Normal
0.1
354
Normal
0.1
698
Normal
0.1
298
Normal
0.1
714
Normal
0.1
232
Normal
0.1
573
Tumor
0.1
128
Normal
0.1
466
Normal
0.1
744
Normal
0.1
391
Tumor
0.1
416
Normal
0.1
328
Normal
0.1
428
Normal
0.1
864
Normal
0.1
722
Normal
0.1
214
Normal
0.1
456
Normal
0.1
261
Tumor
0.1
951
Tumor
0.1
914
Normal
0.1
434
Normal
0.1
494
Normal
0.1
926
Normal
0.1
285
Tumor
0.1
982
Normal
0.1
387
Tumor
0.1
746
Normal
0.1
1026
Normal
0.1
564
Normal
0.1
1032
Normal
0.1
696
Normal
0.1
422
Normal
0.1
558
Normal
0.1
1014
Normal
0.1
956
Normal
0.1
913
Tumor
0.1
686
Normal
0.1
352
Normal
0.1
924
Normal
0.1
286
Normal
0.0
918
Normal
0.0
715
Tumor
0.0
964
Normal
0.0
815
Tumor
0.0
364
Normal
0.0
665
Tumor
0.0
1043
Tumor
0.0
483
Tumor
0.0
271
Tumor
0.0
756
Normal
0.0
146
Normal
0.0
546
Normal
0.0
647
Tumor
0.0
332
Normal
0.0
664
Normal
0.0
1044
Normal
0.0
742
Normal
0.0
666
Normal
0.0
386
Normal
0.0
816
Normal
0.0
572
Normal
0.0
132
Normal
0.0
938
Normal
0.0
916
Normal
0.0
111
Normal
0.0
672
Normal
0.0
545
Tumor
0.0
1016
Normal
0.0
474
Normal
0.0
978
Normal
0.0
478
Normal
0.0
554
Normal
0.0
277
Tumor
0.0
468
Normal
0.0
142
Normal
0.0
878
Normal
0.0
568
Normal
0.0
262
Normal
0.0
965
Tumor
0.0
135
Tumor
0.0
455
Tumor
0.0
162
Normal
0.0
954
Normal
0.0
362
Normal
0.0
463
Tumor
0.0
366
Normal
0.0
314
Normal
0.0
195
Tumor
0.0
114
Normal
0.0
1042
Normal
0.0
778
Normal
0.0
488
Normal
0.0
976
Normal
0.0
1025
Tumor
0.0
526
Normal
0.0
574
Normal
0.0
1021
Tumor
0.0
136
Normal
0.0
662
Normal
-0.1
823
Tumor
-0.1
984
Normal
-0.1
538
Normal
-0.1
1028
Normal
-0.1
516
Normal
-0.1
518
Normal
-0.1
188
Normal
-0.1
267
Tumor
-0.1
968
Normal
-0.1
567
Tumor
-0.1
865
Tumor
-0.1
312
Normal
-0.1
867
Tumor
-0.1
217
Tumor
-0.1
284
Normal
-0.1
471
Tumor
-0.1
1041
Tumor
-0.1
493
Tumor
-0.1
384
Normal
-0.1
728
Normal
-0.1
484
Normal
-0.1
268
Normal
-0.1
524
Normal
-0.1
383
Tumor
-0.1
228
Normal
-0.1
958
Normal
-0.1
966
Normal
-0.1
313
Tumor
-0.1
721
Tumor
-0.1
444
Normal
-0.1
412
Normal
-0.1
272
Normal
-0.1
492
Normal
-0.2
224
Normal
-0.2
191
Tumor
-0.2
356
Normal
-0.2
126
Normal
-0.2
138
Normal
-0.2
353
Tumor
-0.2
977
Tumor
-0.2
212
Normal
-0.2
393
Tumor
-0.2
357
Tumor
-0.2
957
Tumor
-0.2
724
Normal
-0.2
192
Normal
-0.2
447
Tumor
-0.2
671
Tumor
-0.2
553
Tumor
-0.2
327
Tumor
-0.3
131
Tumor
-0.3
427
Tumor
-0.3
187
Tumor
-0.3
743
Tumor
-0.3
536
Normal
-0.3
385
Tumor
-0.3
431
Tumor
-0.3
617
Tumor
-0.3
663
Tumor
-0.3
863
Tumor
-0.3
467
Tumor
-0.3
491
Tumor
-0.3
817
Tumor
-0.3
777
Tumor
-0.3
498
Normal
-0.3
497
Tumor
-0.3
227
Tumor
-0.3
741
Tumor
-0.3
943
Tumor
-0.3
975
Tumor
-0.3
413
Tumor
-0.4
983
Tumor
-0.4
161
Tumor
-0.4
923
Tumor
-0.4
211
Tumor
-0.4
814
Normal
-0.4
813
Tumor
-0.4
877
Tumor
-0.4
213
Tumor
-0.4
351
Tumor
-0.4
713
Tumor
-0.5
527
Tumor
-0.5
355
Tumor
-0.5
661
Tumor
-0.5
917
Tumor
-0.5
343
Tumor
-0.5
415
Tumor
-0.5
557
Tumor
-0.5
411
Tumor
-0.5
861
Tumor
-0.6
125
Tumor
-0.6
283
Tumor
-0.6
375
Tumor
-0.6
1013
Tumor
-0.6
963
Tumor
-0.7
697
Tumor
-0.8
881
Tumor
-0.8
523
Tumor
-0.8
311
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
