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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLEKHO2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
55.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
35.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
34.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
25.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
25.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
18.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
5.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLEKHO2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.3
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
87.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
57.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
36.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
36.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
29.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
29.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
27.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
26.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
26.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
23.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
20.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
6.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
661
Tumor
1.3
311
Tumor
1.0
724
Normal
1.0
492
Normal
0.9
536
Normal
0.8
535
Tumor
0.8
524
Normal
0.7
343
Tumor
0.7
211
Tumor
0.7
467
Tumor
0.7
434
Normal
0.7
498
Normal
0.7
851
Tumor
0.7
213
Tumor
0.6
375
Tumor
0.6
966
Normal
0.6
283
Tumor
0.6
538
Normal
0.6
917
Tumor
0.5
1031
Tumor
0.5
444
Normal
0.5
383
Tumor
0.5
478
Normal
0.5
146
Normal
0.5
861
Tumor
0.5
823
Tumor
0.5
385
Tumor
0.4
978
Normal
0.4
195
Tumor
0.4
141
Tumor
0.4
344
Normal
0.4
491
Tumor
0.4
686
Normal
0.4
262
Normal
0.4
721
Tumor
0.4
916
Normal
0.4
914
Normal
0.4
672
Normal
0.4
713
Tumor
0.4
125
Tumor
0.4
778
Normal
0.4
984
Normal
0.4
943
Tumor
0.4
573
Tumor
0.4
217
Tumor
0.4
455
Tumor
0.3
124
Normal
0.3
224
Normal
0.3
192
Normal
0.3
1015
Tumor
0.3
516
Normal
0.3
421
Tumor
0.3
126
Normal
0.3
223
Tumor
0.3
975
Tumor
0.3
913
Tumor
0.3
744
Normal
0.3
857
Tumor
0.3
447
Tumor
0.3
814
Normal
0.3
852
Normal
0.3
697
Tumor
0.3
363
Tumor
0.3
268
Normal
0.3
352
Normal
0.3
188
Normal
0.3
493
Tumor
0.3
145
Tumor
0.3
461
Tumor
0.3
952
Normal
0.3
963
Tumor
0.2
368
Normal
0.2
716
Normal
0.2
563
Tumor
0.2
817
Tumor
0.2
138
Normal
0.2
525
Tumor
0.2
391
Tumor
0.2
386
Normal
0.2
362
Normal
0.2
312
Normal
0.2
954
Normal
0.2
142
Normal
0.2
976
Normal
0.2
415
Tumor
0.2
396
Normal
0.2
365
Tumor
0.2
1028
Normal
0.2
384
Normal
0.2
272
Normal
0.2
114
Normal
0.2
185
Tumor
0.2
284
Normal
0.2
212
Normal
0.2
471
Tumor
0.2
218
Normal
0.2
881
Tumor
0.1
297
Tumor
0.1
367
Tumor
0.1
968
Normal
0.1
468
Normal
0.1
355
Tumor
0.1
366
Normal
0.1
191
Tumor
0.1
1045
Tumor
0.1
696
Normal
0.1
574
Normal
0.1
662
Normal
0.1
518
Normal
0.1
926
Normal
0.1
286
Normal
0.1
1042
Normal
0.1
494
Normal
0.1
666
Normal
0.1
392
Normal
0.1
395
Tumor
0.1
298
Normal
0.1
878
Normal
0.1
816
Normal
0.1
925
Tumor
0.1
526
Normal
0.1
136
Normal
0.1
818
Normal
0.1
956
Normal
0.1
332
Normal
0.1
922
Normal
0.1
1016
Normal
0.1
617
Tumor
0.1
1014
Normal
0.1
187
Tumor
0.0
883
Tumor
0.0
514
Normal
0.0
111
Normal
0.0
528
Normal
0.0
376
Normal
0.0
858
Normal
0.0
738
Normal
0.0
671
Tumor
0.0
628
Normal
0.0
456
Normal
0.0
488
Normal
0.0
1043
Tumor
0.0
664
Normal
0.0
937
Tumor
0.0
557
Tumor
0.0
137
Tumor
0.0
483
Tumor
0.0
214
Normal
0.0
412
Normal
0.0
1044
Normal
0.0
958
Normal
0.0
558
Normal
0.0
135
Tumor
0.0
715
Tumor
0.0
387
Tumor
0.0
874
Normal
0.0
278
Normal
0.0
728
Normal
0.0
786
Normal
0.0
161
Tumor
0.0
918
Normal
0.0
955
Tumor
0.0
824
Normal
0.0
1026
Normal
0.0
813
Tumor
0.0
537
Tumor
0.0
867
Tumor
0.0
938
Normal
0.0
331
Tumor
-0.1
261
Tumor
-0.1
983
Tumor
-0.1
714
Normal
-0.1
258
Normal
-0.1
451
Tumor
-0.1
554
Normal
-0.1
446
Normal
-0.1
354
Normal
-0.1
1032
Normal
-0.1
882
Normal
-0.1
727
Tumor
-0.1
432
Normal
-0.1
466
Normal
-0.1
756
Normal
-0.1
394
Normal
-0.1
746
Normal
-0.1
356
Normal
-0.1
231
Tumor
-0.1
364
Normal
-0.1
884
Normal
-0.1
222
Normal
-0.1
665
Tumor
-0.1
924
Normal
-0.1
815
Tumor
-0.1
722
Normal
-0.1
474
Normal
-0.1
196
Normal
-0.1
132
Normal
-0.1
464
Normal
-0.1
472
Normal
-0.1
232
Normal
-0.1
427
Tumor
-0.1
423
Tumor
-0.1
785
Tumor
-0.1
162
Normal
-0.1
641
Tumor
-0.1
228
Normal
-0.1
172
Normal
-0.1
128
Normal
-0.1
572
Normal
-0.1
953
Tumor
-0.1
698
Normal
-0.1
534
Normal
-0.1
915
Tumor
-0.1
413
Tumor
-0.1
484
Normal
-0.2
1022
Normal
-0.2
723
Tumor
-0.2
553
Tumor
-0.2
436
Normal
-0.2
944
Normal
-0.2
545
Tumor
-0.2
877
Tumor
-0.2
648
Normal
-0.2
742
Normal
-0.2
388
Normal
-0.2
433
Tumor
-0.2
424
Normal
-0.2
463
Tumor
-0.2
957
Tumor
-0.2
546
Normal
-0.2
113
Tumor
-0.2
328
Normal
-0.2
568
Normal
-0.2
416
Normal
-0.2
951
Tumor
-0.2
564
Normal
-0.2
452
Normal
-0.2
755
Tumor
-0.2
422
Normal
-0.2
642
Normal
-0.2
636
Normal
-0.2
462
Normal
-0.2
982
Normal
-0.2
148
Normal
-0.3
663
Tumor
-0.3
353
Tumor
-0.3
277
Tumor
-0.3
618
Normal
-0.3
448
Normal
-0.3
967
Tumor
-0.3
964
Normal
-0.3
314
Normal
-0.3
482
Normal
-0.3
414
Normal
-0.3
616
Normal
-0.3
428
Normal
-0.3
965
Tumor
-0.3
921
Tumor
-0.3
481
Tumor
-0.3
327
Tumor
-0.3
862
Normal
-0.3
864
Normal
-0.3
342
Normal
-0.3
1046
Normal
-0.3
866
Normal
-0.3
923
Tumor
-0.3
627
Tumor
-0.3
358
Normal
-0.3
567
Tumor
-0.3
912
Normal
-0.4
615
Tumor
-0.4
267
Tumor
-0.4
868
Normal
-0.4
685
Tumor
-0.4
873
Tumor
-0.4
271
Tumor
-0.4
186
Normal
-0.4
361
Tumor
-0.4
426
Normal
-0.4
443
Tumor
-0.4
341
Tumor
-0.4
477
Tumor
-0.4
487
Tumor
-0.4
147
Tumor
-0.4
513
Tumor
-0.4
497
Tumor
-0.4
977
Tumor
-0.4
571
Tumor
-0.5
257
Tumor
-0.5
533
Tumor
-0.5
515
Tumor
-0.5
127
Tumor
-0.5
517
Tumor
-0.5
865
Tumor
-0.5
1025
Tumor
-0.5
227
Tumor
-0.5
112
Tumor
-0.5
411
Tumor
-0.6
285
Tumor
-0.6
221
Tumor
-0.6
527
Tumor
-0.6
473
Tumor
-0.6
431
Tumor
-0.6
1027
Tumor
-0.6
737
Tumor
-0.6
647
Tumor
-0.6
1041
Tumor
-0.6
523
Tumor
-0.6
1021
Tumor
-0.6
981
Tumor
-0.7
445
Tumor
-0.7
745
Tumor
-0.7
435
Tumor
-0.7
911
Tumor
-0.7
393
Tumor
-0.7
123
Tumor
-0.7
1013
Tumor
-0.7
313
Tumor
-0.7
171
Tumor
-0.8
465
Tumor
-0.8
695
Tumor
-0.8
741
Tumor
-0.8
863
Tumor
-0.8
777
Tumor
-0.8
351
Tumor
-0.9
635
Tumor
-0.9
425
Tumor
-0.9
357
Tumor
-0.9
131
Tumor
-1.0
743
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
