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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CD302 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
115.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
111.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
77.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
76.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
75.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
71.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
71.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
70.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
69.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
66.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
66.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
66.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
65.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
61.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
60.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
59.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
59.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
59.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
58.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
57.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
57.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
56.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
56.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
56.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
55.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
55.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
55.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
54.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
53.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
53.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
53.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
52.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
51.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
51.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
50.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
50.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
49.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
49.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
48.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
48.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
46.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
46.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
45.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
45.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
45.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
44.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
43.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
43.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
42.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
42.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
41.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
41.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
41.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
41.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
41.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
41.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
41.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
40.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
40.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
40.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
39.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
38.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
38.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
38.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
38.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
38.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
37.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
37.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
37.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
36.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
36.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
36.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
36.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
36.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
36.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
35.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
35.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
35.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
35.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
35.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
35.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
35.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
34.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
34.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
34.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
34.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
34.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
33.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
33.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
33.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
33.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
33.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
33.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
33.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
33.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
33.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
32.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
32.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
32.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
32.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
32.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
32.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
32.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
32.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
32.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
32.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
31.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
31.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
31.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
31.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
31.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
31.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
31.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
30.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
30.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
30.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
30.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
30.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
30.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
30.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
30.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
30.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
29.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
29.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
29.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
29.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
29.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
29.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
28.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
28.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
28.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
28.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
27.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
27.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
27.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
27.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
27.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
27.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
27.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
27.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
27.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
27.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
26.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
26.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
25.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
25.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
25.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
25.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
25.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
25.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
24.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
24.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
24.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
24.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
24.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
24.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
24.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
24.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
24.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
24.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
23.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
23.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
23.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
23.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
23.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
23.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
23.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
23.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
23.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
23.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
22.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
22.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
22.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
22.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
22.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
22.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
22.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
22.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
22.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
21.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
21.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
21.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
21.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
21.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
21.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
21.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
21.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
20.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
19.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
19.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
19.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
19.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
19.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
19.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
19.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
19.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
18.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
18.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
18.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
18.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
18.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
17.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
17.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
16.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
13.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
10.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
3.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CD302 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.7
Number of samples
231
Samples
Sample
Description
TPM
DO50844
0 years, male, NA, stage:4, alive, 300 days
175.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
106.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
105.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
99.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
87.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
87.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
87.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
84.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
80.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
80.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
78.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
76.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
72.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
72.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
71.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
68.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
65.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
65.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
63.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
63.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
61.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
60.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
60.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
59.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
59.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
59.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
59.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
59.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
59.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
59.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
57.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
57.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
57.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
57.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
57.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
57.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
57.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
56.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
56.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
56.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
55.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
55.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
54.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
54.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
53.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
53.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
52.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
52.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
52.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
52.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
51.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
51.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
51.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
50.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
50.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
50.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
50.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
50.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
50.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
48.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
47.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
47.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
47.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
46.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
46.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
46.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
46.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
46.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
45.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
45.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
45.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
45.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
45.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
44.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
44.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
44.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
44.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
43.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
43.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
43.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
43.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
43.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
42.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
42.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
41.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
41.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
41.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
41.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
41.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
41.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
41.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
41.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
40.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
40.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
40.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
40.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
40.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
39.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
39.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
39.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
39.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
39.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
39.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
38.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
38.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
38.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
37.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
37.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
37.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
36.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
36.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
36.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
36.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
35.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
34.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
34.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
34.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
33.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
33.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
33.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
33.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
33.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
33.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
33.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
33.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
32.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
32.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
32.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
32.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
32.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
32.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
32.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
32.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
31.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
31.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
31.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
31.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
31.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
31.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
30.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
30.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
30.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
30.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
30.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
29.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
29.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
29.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
29.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
28.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
28.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
28.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
27.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
27.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
27.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
27.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
26.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
26.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
26.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
26.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
26.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
26.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
25.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
25.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
25.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
25.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
24.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
24.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
24.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
24.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
24.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
23.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
23.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
22.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
21.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
20.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
20.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
17.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
16.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
3.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
527
Tumor
N/A
648
Normal
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
545
Tumor
N/A
666
Normal
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
312
Normal
N/A
433
Tumor
N/A
554
Normal
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.