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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDXP is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
310.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
139.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
111.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
95.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
83.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
74.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
74.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
72.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
70.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
70.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
69.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
67.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
66.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
65.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
64.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
63.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
62.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
61.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
60.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
60.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
60.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
59.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
59.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
59.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
58.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
57.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
57.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
56.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
55.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
54.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
54.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
54.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
53.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
52.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
52.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
51.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
51.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
51.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
51.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
50.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
50.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
50.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
49.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
49.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
49.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
49.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
49.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
48.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
48.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
48.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
48.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
48.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
47.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
47.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
47.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
46.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
46.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
46.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
46.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
46.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
46.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
46.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
46.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
45.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
45.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
45.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
45.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
45.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
45.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
44.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
44.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
44.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
43.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
43.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
43.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
43.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
43.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
42.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
42.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
42.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
42.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
41.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
41.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
41.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
41.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
41.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
41.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
40.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
40.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
40.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
40.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
39.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
39.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
39.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
39.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
39.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
39.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
39.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
39.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
39.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
39.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
39.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
39.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
39.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
39.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
38.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
38.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
38.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
38.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
38.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
38.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
38.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
38.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
38.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
38.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
37.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
37.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
37.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
37.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
37.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
36.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
36.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
36.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
36.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
36.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
36.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
36.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
36.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
35.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
35.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
35.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
35.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
35.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
35.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
35.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
34.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
34.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
34.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
34.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
34.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
34.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
34.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
34.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
34.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
33.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
33.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
33.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
33.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
33.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
33.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
33.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
33.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
33.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
33.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
33.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
33.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
32.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
32.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
32.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
32.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
32.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
32.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
32.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
31.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
31.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
31.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
31.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
31.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
31.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
31.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
31.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
31.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
31.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
31.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
31.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
31.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
31.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
30.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
30.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
30.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
30.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
30.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
30.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
30.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
30.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
29.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
29.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
29.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
29.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
29.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
28.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
28.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
28.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
28.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
28.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
28.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
28.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
28.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
28.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
28.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
28.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
28.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
28.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
28.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
28.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
28.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
28.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
27.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
27.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
27.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
27.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
27.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
27.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
26.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
26.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
26.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
26.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
26.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
26.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
26.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
26.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
25.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
25.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
25.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
25.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
25.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
25.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
25.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
25.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
25.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
25.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
24.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
24.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
24.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
24.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
24.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
24.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
24.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
24.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
23.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
23.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
23.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
23.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
23.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
23.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
23.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
23.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
22.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
22.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
22.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
22.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
21.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
21.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
21.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
21.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
21.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
20.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
20.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
20.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
20.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
19.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
19.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
19.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
19.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
19.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
19.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
18.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
18.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
18.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
17.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
17.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
17.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
17.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
16.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
15.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
14.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
14.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
13.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
8.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDXP is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.0
Number of samples
231
Samples
Sample
Description
TPM
DO45201
0 years, male, NA, stage:1, alive, 900 days
72.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
64.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
60.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
58.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
57.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
56.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
55.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
55.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
54.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
54.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
53.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
52.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
52.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
49.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
49.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
48.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
47.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
46.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
45.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
44.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
44.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
43.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
43.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
42.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
41.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
41.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
39.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
39.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
39.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
37.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
37.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
36.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
36.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
35.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
35.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
34.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
34.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
34.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
33.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
33.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
33.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
33.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
32.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
32.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
32.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
32.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
32.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
32.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
32.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
31.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
31.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
30.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
30.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
29.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
29.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
29.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
29.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
29.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
29.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
28.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
28.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
28.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
28.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
28.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
27.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
27.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
27.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
26.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
26.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
26.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
26.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
26.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
26.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
26.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
25.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
25.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
25.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
25.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
25.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
24.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
24.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
23.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
23.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
23.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
23.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
23.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
23.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
23.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
23.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
22.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
22.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
22.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
22.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
21.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
21.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
21.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
20.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
20.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
20.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
20.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
19.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
19.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
19.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
19.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
19.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
19.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
18.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
18.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
17.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
17.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
6.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
3.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.0
123
Tumor
0.7
341
Tumor
0.7
785
Tumor
0.6
615
Tumor
0.6
435
Tumor
0.6
777
Tumor
0.5
695
Tumor
0.5
361
Tumor
0.5
147
Tumor
0.5
477
Tumor
0.5
387
Tumor
0.5
445
Tumor
0.5
746
Normal
0.5
357
Tumor
0.5
342
Normal
0.5
742
Normal
0.4
952
Normal
0.4
452
Normal
0.4
635
Tumor
0.4
436
Normal
0.4
186
Normal
0.4
483
Tumor
0.4
698
Normal
0.4
331
Tumor
0.4
465
Tumor
0.4
218
Normal
0.4
484
Normal
0.4
513
Tumor
0.4
981
Tumor
0.4
481
Tumor
0.3
924
Normal
0.3
685
Tumor
0.3
546
Normal
0.3
517
Tumor
0.3
738
Normal
0.3
1022
Normal
0.3
723
Tumor
0.3
627
Tumor
0.3
456
Normal
0.3
393
Tumor
0.3
127
Tumor
0.3
862
Normal
0.3
1026
Normal
0.3
728
Normal
0.3
1045
Tumor
0.3
518
Normal
0.3
482
Normal
0.3
464
Normal
0.3
162
Normal
0.3
222
Normal
0.3
818
Normal
0.3
111
Normal
0.2
944
Normal
0.2
534
Normal
0.2
1046
Normal
0.2
967
Tumor
0.2
448
Normal
0.2
618
Normal
0.2
911
Tumor
0.2
756
Normal
0.2
472
Normal
0.2
394
Normal
0.2
925
Tumor
0.2
388
Normal
0.2
327
Tumor
0.2
298
Normal
0.2
778
Normal
0.2
1016
Normal
0.2
882
Normal
0.2
368
Normal
0.2
358
Normal
0.2
462
Normal
0.2
356
Normal
0.2
965
Tumor
0.2
858
Normal
0.2
344
Normal
0.2
426
Normal
0.2
938
Normal
0.2
922
Normal
0.2
1043
Tumor
0.2
172
Normal
0.2
955
Tumor
0.2
128
Normal
0.2
488
Normal
0.2
642
Normal
0.2
926
Normal
0.2
966
Normal
0.2
744
Normal
0.2
878
Normal
0.2
915
Tumor
0.2
554
Normal
0.2
148
Normal
0.2
737
Tumor
0.2
666
Normal
0.2
285
Tumor
0.2
568
Normal
0.2
271
Tumor
0.2
921
Tumor
0.2
258
Normal
0.2
515
Tumor
0.2
648
Normal
0.2
786
Normal
0.2
867
Tumor
0.2
365
Tumor
0.2
714
Normal
0.2
376
Normal
0.2
696
Normal
0.2
523
Tumor
0.2
1032
Normal
0.2
392
Normal
0.2
1042
Normal
0.1
286
Normal
0.1
914
Normal
0.1
824
Normal
0.1
214
Normal
0.1
571
Tumor
0.1
953
Tumor
0.1
114
Normal
0.1
912
Normal
0.1
984
Normal
0.1
636
Normal
0.1
616
Normal
0.1
432
Normal
0.1
526
Normal
0.1
171
Tumor
0.1
131
Tumor
0.1
664
Normal
0.1
874
Normal
0.1
722
Normal
0.1
354
Normal
0.1
366
Normal
0.1
964
Normal
0.1
328
Normal
0.1
277
Tumor
0.1
468
Normal
0.1
727
Tumor
0.1
132
Normal
0.1
124
Normal
0.1
956
Normal
0.1
918
Normal
0.1
1044
Normal
0.1
982
Normal
0.1
196
Normal
0.1
367
Tumor
0.1
866
Normal
0.1
386
Normal
0.1
232
Normal
0.1
968
Normal
0.1
884
Normal
0.1
466
Normal
0.1
314
Normal
0.1
364
Normal
0.1
474
Normal
0.1
142
Normal
0.1
954
Normal
0.1
112
Tumor
0.1
868
Normal
0.1
1014
Normal
0.1
745
Tumor
0.1
231
Tumor
0.1
446
Normal
0.1
261
Tumor
0.1
312
Normal
0.1
412
Normal
0.1
278
Normal
0.1
146
Normal
0.0
494
Normal
0.0
686
Normal
0.0
716
Normal
0.0
422
Normal
0.0
332
Normal
0.0
528
Normal
0.0
662
Normal
0.0
958
Normal
0.0
443
Tumor
0.0
672
Normal
0.0
816
Normal
0.0
352
Normal
0.0
416
Normal
0.0
228
Normal
0.0
272
Normal
0.0
628
Normal
0.0
1028
Normal
0.0
433
Tumor
0.0
362
Normal
0.0
396
Normal
0.0
136
Normal
0.0
864
Normal
0.0
212
Normal
0.0
514
Normal
0.0
313
Tumor
0.0
138
Normal
0.0
976
Normal
0.0
516
Normal
0.0
428
Normal
0.0
414
Normal
0.0
815
Tumor
0.0
1021
Tumor
0.0
721
Tumor
0.0
185
Tumor
0.0
873
Tumor
0.0
424
Normal
0.0
1041
Tumor
0.0
574
Normal
0.0
257
Tumor
0.0
1025
Tumor
0.0
558
Normal
0.0
916
Normal
-0.1
863
Tumor
-0.1
262
Normal
-0.1
538
Normal
-0.1
391
Tumor
-0.1
852
Normal
-0.1
137
Tumor
-0.1
434
Normal
-0.1
755
Tumor
-0.1
564
Normal
-0.1
977
Tumor
-0.1
498
Normal
-0.1
141
Tumor
-0.1
217
Tumor
-0.1
363
Tumor
-0.1
527
Tumor
-0.1
923
Tumor
-0.1
978
Normal
-0.1
423
Tumor
-0.1
223
Tumor
-0.1
267
Tumor
-0.1
741
Tumor
-0.1
937
Tumor
-0.1
431
Tumor
-0.1
463
Tumor
-0.1
268
Normal
-0.1
617
Tumor
-0.1
353
Tumor
-0.1
572
Normal
-0.1
553
Tumor
-0.1
647
Tumor
-0.2
188
Normal
-0.2
537
Tumor
-0.2
478
Normal
-0.2
1015
Tumor
-0.2
415
Tumor
-0.2
493
Tumor
-0.2
461
Tumor
-0.2
524
Normal
-0.2
384
Normal
-0.2
284
Normal
-0.2
665
Tumor
-0.2
451
Tumor
-0.2
126
Normal
-0.2
471
Tumor
-0.2
492
Normal
-0.2
425
Tumor
-0.3
195
Tumor
-0.3
883
Tumor
-0.3
715
Tumor
-0.3
224
Normal
-0.3
192
Normal
-0.3
536
Normal
-0.3
877
Tumor
-0.3
851
Tumor
-0.3
1031
Tumor
-0.3
533
Tumor
-0.3
161
Tumor
-0.3
297
Tumor
-0.3
957
Tumor
-0.3
413
Tumor
-0.3
641
Tumor
-0.3
221
Tumor
-0.3
473
Tumor
-0.3
355
Tumor
-0.3
951
Tumor
-0.3
567
Tumor
-0.4
411
Tumor
-0.4
983
Tumor
-0.4
857
Tumor
-0.4
563
Tumor
-0.4
145
Tumor
-0.4
444
Normal
-0.4
724
Normal
-0.4
113
Tumor
-0.4
421
Tumor
-0.4
865
Tumor
-0.4
1013
Tumor
-0.4
913
Tumor
-0.4
557
Tumor
-0.4
545
Tumor
-0.4
963
Tumor
-0.5
823
Tumor
-0.5
455
Tumor
-0.5
697
Tumor
-0.5
447
Tumor
-0.5
383
Tumor
-0.5
213
Tumor
-0.5
861
Tumor
-0.5
671
Tumor
-0.5
395
Tumor
-0.5
497
Tumor
-0.6
975
Tumor
-0.6
814
Normal
-0.6
427
Tumor
-0.6
813
Tumor
-0.6
917
Tumor
-0.6
467
Tumor
-0.6
881
Tumor
-0.6
525
Tumor
-0.6
343
Tumor
-0.6
187
Tumor
-0.6
713
Tumor
-0.6
663
Tumor
-0.6
375
Tumor
-0.6
487
Tumor
-0.7
351
Tumor
-0.7
661
Tumor
-0.7
191
Tumor
-0.7
943
Tumor
-0.7
573
Tumor
-0.7
535
Tumor
-0.8
311
Tumor
-0.8
385
Tumor
-0.8
125
Tumor
-0.8
491
Tumor
-0.8
135
Tumor
-0.9
227
Tumor
-0.9
283
Tumor
-0.9
817
Tumor
-1.1
743
Tumor
-1.2
211
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
