We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NSUN6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
45.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
36.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
34.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
32.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
27.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
26.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
24.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
23.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
22.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
22.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
21.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
21.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
20.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
20.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
20.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
20.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
19.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
19.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
19.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
19.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
18.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
18.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
18.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
15.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
14.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
8.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
5.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NSUN6 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.5
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
88.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
64.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
59.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
55.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
52.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
51.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
50.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
46.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
44.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
43.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
41.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
41.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
40.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
40.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
40.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
39.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
37.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
37.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
36.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
35.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
34.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
34.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
33.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
33.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
32.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
32.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
32.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
31.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
30.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
28.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
28.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
28.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
28.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
28.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
27.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
27.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
27.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
26.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
26.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
26.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
25.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
25.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
25.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
25.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
25.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
25.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
24.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
24.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
24.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
24.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
24.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
23.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
23.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
22.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
22.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
21.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
21.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
21.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
21.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
21.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
20.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
20.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
20.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
20.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
19.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
19.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
19.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
19.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
18.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
18.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
18.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
16.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
4.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
3.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
515
Tumor
1.5
617
Tumor
1.1
636
Normal
0.9
376
Normal
0.8
864
Normal
0.8
527
Tumor
0.7
468
Normal
0.7
984
Normal
0.7
912
Normal
0.7
878
Normal
0.7
128
Normal
0.7
431
Tumor
0.7
618
Normal
0.7
528
Normal
0.7
862
Normal
0.7
456
Normal
0.7
865
Tumor
0.7
148
Normal
0.6
186
Normal
0.6
958
Normal
0.6
756
Normal
0.6
196
Normal
0.6
484
Normal
0.6
466
Normal
0.6
918
Normal
0.6
572
Normal
0.6
628
Normal
0.6
1046
Normal
0.6
114
Normal
0.6
172
Normal
0.6
813
Tumor
0.6
327
Tumor
0.5
574
Normal
0.5
436
Normal
0.5
924
Normal
0.5
368
Normal
0.5
494
Normal
0.5
944
Normal
0.5
778
Normal
0.5
516
Normal
0.5
356
Normal
0.5
558
Normal
0.5
538
Normal
0.5
722
Normal
0.5
742
Normal
0.5
416
Normal
0.5
188
Normal
0.5
672
Normal
0.5
737
Tumor
0.5
284
Normal
0.5
358
Normal
0.5
648
Normal
0.5
228
Normal
0.5
136
Normal
0.5
426
Normal
0.5
786
Normal
0.4
465
Tumor
0.4
882
Normal
0.4
642
Normal
0.4
524
Normal
0.4
696
Normal
0.4
483
Tumor
0.4
464
Normal
0.4
384
Normal
0.4
546
Normal
0.4
383
Tumor
0.4
738
Normal
0.4
518
Normal
0.4
858
Normal
0.4
422
Normal
0.4
332
Normal
0.4
132
Normal
0.4
824
Normal
0.4
448
Normal
0.4
616
Normal
0.4
746
Normal
0.4
135
Tumor
0.4
1032
Normal
0.4
866
Normal
0.4
446
Normal
0.4
818
Normal
0.4
482
Normal
0.4
728
Normal
0.4
428
Normal
0.4
514
Normal
0.4
364
Normal
0.4
873
Tumor
0.4
298
Normal
0.4
662
Normal
0.4
412
Normal
0.4
534
Normal
0.4
1022
Normal
0.4
554
Normal
0.4
414
Normal
0.4
113
Tumor
0.3
432
Normal
0.3
424
Normal
0.3
523
Tumor
0.3
1014
Normal
0.3
723
Tumor
0.3
262
Normal
0.3
716
Normal
0.3
954
Normal
0.3
392
Normal
0.3
714
Normal
0.3
462
Normal
0.3
1031
Tumor
0.3
1042
Normal
0.3
926
Normal
0.3
913
Tumor
0.3
443
Tumor
0.3
1026
Normal
0.3
137
Tumor
0.3
127
Tumor
0.3
976
Normal
0.3
342
Normal
0.3
664
Normal
0.3
698
Normal
0.3
126
Normal
0.3
162
Normal
0.3
916
Normal
0.3
744
Normal
0.3
938
Normal
0.3
312
Normal
0.3
111
Normal
0.3
214
Normal
0.2
526
Normal
0.2
352
Normal
0.2
952
Normal
0.2
863
Tumor
0.2
258
Normal
0.2
232
Normal
0.2
272
Normal
0.2
964
Normal
0.2
222
Normal
0.2
874
Normal
0.2
138
Normal
0.2
488
Normal
0.2
884
Normal
0.2
983
Tumor
0.2
955
Tumor
0.2
686
Normal
0.2
147
Tumor
0.2
146
Normal
0.2
124
Normal
0.2
474
Normal
0.2
914
Normal
0.2
568
Normal
0.2
478
Normal
0.2
278
Normal
0.2
472
Normal
0.2
816
Normal
0.2
344
Normal
0.2
452
Normal
0.2
966
Normal
0.2
852
Normal
0.2
328
Normal
0.2
445
Tumor
0.2
536
Normal
0.2
354
Normal
0.2
425
Tumor
0.2
721
Tumor
0.2
943
Tumor
0.1
366
Normal
0.1
922
Normal
0.1
444
Normal
0.1
388
Normal
0.1
223
Tumor
0.1
777
Tumor
0.1
564
Normal
0.1
314
Normal
0.1
666
Normal
0.1
362
Normal
0.1
415
Tumor
0.1
517
Tumor
0.1
212
Normal
0.1
815
Tumor
0.1
224
Normal
0.1
1044
Normal
0.1
413
Tumor
0.1
471
Tumor
0.1
513
Tumor
0.1
142
Normal
0.1
817
Tumor
0.1
481
Tumor
0.1
1025
Tumor
0.1
187
Tumor
0.1
191
Tumor
0.1
814
Normal
0.1
1016
Normal
0.1
663
Tumor
0.1
467
Tumor
0.1
915
Tumor
0.1
956
Normal
0.0
968
Normal
0.0
857
Tumor
0.0
367
Tumor
0.0
563
Tumor
0.0
497
Tumor
0.0
627
Tumor
0.0
1028
Normal
0.0
498
Normal
0.0
923
Tumor
0.0
978
Normal
0.0
353
Tumor
0.0
755
Tumor
0.0
386
Normal
0.0
868
Normal
0.0
421
Tumor
0.0
145
Tumor
0.0
434
Normal
0.0
477
Tumor
0.0
553
Tumor
-0.1
394
Normal
-0.1
396
Normal
-0.1
195
Tumor
-0.1
925
Tumor
-0.1
268
Normal
-0.1
461
Tumor
-0.1
715
Tumor
-0.1
937
Tumor
-0.1
341
Tumor
-0.1
695
Tumor
-0.1
1013
Tumor
-0.1
492
Normal
-0.1
635
Tumor
-0.1
455
Tumor
-0.2
823
Tumor
-0.2
1043
Tumor
-0.2
641
Tumor
-0.2
911
Tumor
-0.2
218
Normal
-0.2
917
Tumor
-0.2
921
Tumor
-0.2
361
Tumor
-0.2
535
Tumor
-0.2
357
Tumor
-0.2
112
Tumor
-0.2
1021
Tumor
-0.2
615
Tumor
-0.2
221
Tumor
-0.3
261
Tumor
-0.3
665
Tumor
-0.3
393
Tumor
-0.3
545
Tumor
-0.3
851
Tumor
-0.3
1045
Tumor
-0.3
785
Tumor
-0.3
423
Tumor
-0.3
286
Normal
-0.3
161
Tumor
-0.3
977
Tumor
-0.3
365
Tumor
-0.3
861
Tumor
-0.3
982
Normal
-0.4
297
Tumor
-0.4
661
Tumor
-0.4
267
Tumor
-0.4
447
Tumor
-0.4
487
Tumor
-0.4
881
Tumor
-0.4
473
Tumor
-0.4
185
Tumor
-0.4
493
Tumor
-0.4
533
Tumor
-0.4
331
Tumor
-0.4
951
Tumor
-0.5
1041
Tumor
-0.5
685
Tumor
-0.5
343
Tumor
-0.5
192
Normal
-0.5
967
Tumor
-0.5
141
Tumor
-0.5
427
Tumor
-0.5
1027
Tumor
-0.5
351
Tumor
-0.5
123
Tumor
-0.6
451
Tumor
-0.6
975
Tumor
-0.6
713
Tumor
-0.6
355
Tumor
-0.6
883
Tumor
-0.6
957
Tumor
-0.6
463
Tumor
-0.6
433
Tumor
-0.7
283
Tumor
-0.7
697
Tumor
-0.7
1015
Tumor
-0.7
867
Tumor
-0.7
213
Tumor
-0.7
217
Tumor
-0.7
125
Tumor
-0.7
981
Tumor
-0.7
647
Tumor
-0.7
724
Normal
-0.7
435
Tumor
-0.7
257
Tumor
-0.8
557
Tumor
-0.8
953
Tumor
-0.8
171
Tumor
-0.8
311
Tumor
-0.8
491
Tumor
-0.8
395
Tumor
-0.8
741
Tumor
-0.8
537
Tumor
-0.8
131
Tumor
-0.8
271
Tumor
-0.9
963
Tumor
-0.9
745
Tumor
-0.9
411
Tumor
-0.9
277
Tumor
-0.9
671
Tumor
-0.9
313
Tumor
-0.9
727
Tumor
-0.9
363
Tumor
-0.9
387
Tumor
-0.9
525
Tumor
-0.9
877
Tumor
-0.9
571
Tumor
-1.0
391
Tumor
-1.0
285
Tumor
-1.0
743
Tumor
-1.1
385
Tumor
-1.1
375
Tumor
-1.1
231
Tumor
-1.2
227
Tumor
-1.2
567
Tumor
-1.2
211
Tumor
-1.3
573
Tumor
-1.5
965
Tumor
-1.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
