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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
35.1
nTPM
HPA Brain:
121.2
nTPM
GTEx:
35.1
nTPM
FANTOM5:
23.6
Scaled Tags Per Million
Pig:
42.9
nTPM
Mouse:
22.5
nTPM
Allen mouse:
0.3
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
121.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 81.9
1827
Male, age 72, unknown
111.0
2411
Female, age 72, unknown
92.7
1870
Female, age 42, unknown
91.1
2586
Male, age 75, left hemisphere
86.3
1833
Male, age 53, unknown
80.1
2666
Male, age 74, left hemisphere
79.2
2219
Male, age 76, both hemispheres
74.2
1830
Male, age 51, unknown
72.5
2828
Female, age 72, unknown
70.7
2019
Male, age 18, unknown
60.8
Dorsal raphe nucleus nTPM: 95.3
2298
Female, age 72, unknown
126.3
2047
Male, age 72, unknown
96.4
1828
Male, age 53, unknown
90.5
2016
Female, age 72, unknown
86.2
2750
Male, age 76, both hemispheres
77.2
Inferior colliculus nTPM: 115.5
2097
Female, age 72, unknown
136.0
2849
Male, age 72, unknown
124.9
1848
Female, age 42, unknown
117.4
1890
Male, age 53, unknown
83.8
Median raphe nucleus nTPM: 117.6
2220
Male, age 76, midline
117.6
Periaquaductal grey, anterior nTPM: 121.2
2502
Female, age 75, unknown
142.0
1947
Male, age 18, unknown
115.5
1795
Male, age 51, unknown
106.1
Periaquaductal grey, dorsal nTPM: 114.1
1840
Male, age 53, unknown
147.6
2850
Male, age 76, both hemispheres
110.8
1831
Male, age 72, unknown
100.4
2464
Female, age 72, unknown
97.7
Periaquaductal grey, lateral nTPM: 107.8
2140
Male, age 76, both hemispheres
114.4
2053
Male, age 18, unknown
107.5
2272
Male, age 74, both hemispheres
101.7
Pretectal area nTPM: 100.9
2224
Female, age 72, unknown
133.3
1816
Male, age 51, unknown
114.6
2825
Male, age 18, unknown
114.4
2273
Male, age 74, both hemispheres
110.5
1944
Female, age 72, unknown
104.2
2316
Male, age 76, right hemisphere
97.7
2407
Male, age 75, both hemispheres
97.6
2007
Male, age 72, unknown
94.5
1815
Male, age 53, unknown
84.3
1817
Female, age 42, unknown
84.2
2667
Female, age 75, unknown
74.5
Red nucleus nTPM: 51.8
2584
Male, age 75, left hemisphere
72.9
2725
Female, age 75, unknown
64.8
2785
Male, age 18, unknown
58.1
1821
Female, age 72, unknown
56.2
2769
Male, age 72, unknown
54.3
2227
Male, age 72, unknown
54.1
1954
Female, age 42, unknown
50.3
2503
Female, age 72, unknown
46.1
2588
Male, age 74, left hemisphere
43.4
2823
Male, age 76, right hemisphere
42.1
1865
Male, age 51, unknown
39.6
1904
Male, age 53, unknown
39.2
Substantia nigra nTPM: 85.1
1941
Male, age 53, unknown
114.4
2241
Male, age 72, unknown
100.5
1916
Female, age 42, unknown
94.7
2590
Female, age 75, unknown
89.8
2665
Male, age 74, both hemispheres
89.5
1889
Female, age 72, unknown
89.4
1851
Male, age 51, unknown
79.8
2699
Male, age 18, unknown
68.7
2583
Male, age 75, right hemisphere
66.3
2409
Female, age 72, unknown
57.8
Superior colliculus nTPM: 90.9
2664
Male, age 75, both hemispheres
125.6
1839
Male, age 51, unknown
112.9
2261
Male, age 18, unknown
112.0
1796
Male, age 53, unknown
104.3
1895
Male, age 76, right hemisphere
104.3
2087
Female, age 72, unknown
94.5
2587
Male, age 74, left hemisphere
81.6
2668
Female, age 75, unknown
72.1
1913
Female, age 42, unknown
53.5
1995
Male, age 72, unknown
48.6
Ventral tegmental area nTPM: 91.9
2218
Male, age 76, both hemispheres
104.5
1942
Male, age 51, unknown
103.6
1915
Female, age 42, unknown
94.7
2021
Male, age 53, unknown
92.2
2223
Female, age 72, unknown
80.8
2410
Female, age 72, unknown
75.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
35.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 35.1
Samples: 139
Max nTPM: 140.1
Min nTPM: 3.8
Std nTPM: 20.8
Median nTPM: 30.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
140.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
120.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
88.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
88.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
83.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
81.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
80.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
73.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
71.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
71.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
70.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
66.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
64.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
64.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
62.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
57.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
54.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
54.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
53.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
51.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
50.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
49.1
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
48.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
48.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
47.8
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
47.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
46.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
45.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
45.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
45.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
45.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
44.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
44.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
44.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
42.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
42.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
42.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
42.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
42.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
42.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
41.6
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
41.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
40.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
40.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
38.9
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
38.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
38.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
38.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
37.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
37.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
37.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
36.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
36.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
35.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
34.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
34.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
34.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
34.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
33.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
33.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
32.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
32.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
32.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
31.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
31.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
31.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
30.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
30.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
30.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
30.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
29.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
29.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
28.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
28.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
27.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
27.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
27.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
27.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
26.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
26.6
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
26.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
26.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
25.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
25.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
25.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
24.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
24.8
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
24.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
24.6
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
24.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
24.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
24.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
23.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
23.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
23.4
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
23.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
23.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
23.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
22.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
22.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
22.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
22.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
22.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
22.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
22.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
22.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
21.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
20.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
19.8
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
19.8
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
19.4
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
19.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
19.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
19.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
19.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
18.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
18.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
18.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
17.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
17.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
17.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
17.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
17.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
16.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
16.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
15.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
15.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
15.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
14.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
14.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
13.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
13.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
13.4
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
11.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
11.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
8.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
7.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
6.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
3.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
22.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 22.5
Samples: 4
Max nTPM: 23.5
Min nTPM: 21.3
Sample A
Male
21.3
Sample B
Male
23.3
Sample C
Female
21.7
Sample D
Female
23.5
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.