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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
54.7
nTPM
HPA Brain:
176.6
nTPM
GTEx:
54.7
nTPM
FANTOM5:
153.4
Scaled Tags Per Million
Pig:
44.6
nTPM
Mouse:
27.4
nTPM
Allen mouse:
1.7
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA001936
Glial cells
Not detected
Neuronal cells
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
176.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 101.1
1898
Male, age 80, left hemisphere
135.4
2621
Female, age 67, right hemisphere
104.8
2148
Female, age 91, left hemisphere
102.7
1855
Male, age 76, left hemisphere
91.2
1911
Female, age 85, right hemisphere
88.3
2529
Female, age 94, left hemisphere
83.8
Dentate gyrus nTPM: 115.5
1927
Female, age 91, both hemispheres
147.8
2531
Female, age 67, both hemispheres
122.7
2246
Female, age 85, both hemispheres
120.3
2528
Male, age 74, both hemispheres
112.6
2010
Male, age 76, both hemispheres
97.2
2530
Female, age 94, left hemisphere
92.6
Entorhinal gyrus nTPM: 130.4
2764
Male, age 80, right hemisphere
164.8
1938
Female, age 85, left hemisphere
160.4
2613
Female, age 94, left hemisphere
143.2
1787
Male, age 76, left hemisphere
129.3
2686
Male, age 75, right hemisphere
101.5
2117
Female, age 91, right hemisphere
83.4
Hippocampus, CA1 nTPM: 124.5
2749
Male, age 80, left hemisphere
170.9
1873
Female, age 85, both hemispheres
124.5
2527
Male, age 74, both hemispheres
111.5
2045
Male, age 76, both hemispheres
109.8
2082
Female, age 91, right hemisphere
105.9
Hippocampus, CA2 nTPM: 108.8
1892
Male, age 76, both hemispheres
134.9
1963
Male, age 80, left hemisphere
113.8
2437
Female, age 94, left hemisphere
108.4
2249
Male, age 74, both hemispheres
104.8
2113
Female, age 91, right hemisphere
97.0
1940
Female, age 85, left hemisphere
94.1
Hippocampus, CA3 nTPM: 118.4
2620
Female, age 94, left hemisphere
150.3
2137
Male, age 80, left hemisphere
145.5
1867
Male, age 76, both hemispheres
114.6
1891
Female, age 85, both hemispheres
103.4
2861
Female, age 67, both hemispheres
99.0
2436
Male, age 74, both hemispheres
97.5
Parahippocampal cortex nTPM: 132.1
1850
Male, age 80, both hemispheres
168.9
2250
Female, age 67, right hemisphere
152.9
1990
Female, age 91, right hemisphere
151.1
2245
Female, age 91, both hemispheres
144.2
2693
Female, age 94, both hemispheres
140.6
1933
Female, age 85, both hemispheres
139.7
2532
Female, age 72, left hemisphere
132.0
2622
Female, age 67, right hemisphere
101.6
2692
Male, age 74, both hemispheres
97.2
2018
Male, age 76, both hemispheres
92.7
Perirhinal gyrus nTPM: 176.6
1847
Female, age 91, left hemisphere
202.1
1794
Male, age 80, right hemisphere
180.3
1841
Female, age 85, right hemisphere
176.8
2848
Male, age 76, right hemisphere
164.8
2521
Female, age 94, right hemisphere
159.0
Subiculum nTPM: 100.5
1977
Female, age 85, both hemispheres
154.4
1901
Male, age 80, both hemispheres
102.7
2619
Male, age 74, both hemispheres
100.2
2438
Female, age 94, left hemisphere
93.6
2729
Female, age 91, right hemisphere
82.5
2042
Male, age 76, both hemispheres
69.5
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
54.7
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 54.7
Samples: 197
Max nTPM: 151.7
Min nTPM: 7.6
Std nTPM: 31.4
Median nTPM: 49.9
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
151.7
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
148.9
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
131.0
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
129.0
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
127.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
126.9
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
125.0
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
124.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
122.2
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
120.6
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
112.9
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
109.0
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
107.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
106.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
103.8
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
102.2
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
100.8
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
98.9
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
98.7
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
96.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
95.2
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
94.9
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
93.0
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
91.0
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
90.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
90.3
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
90.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
88.2
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
88.0
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
87.7
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
87.5
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
86.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
85.6
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
85.5
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
85.0
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
84.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
84.3
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
83.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
83.7
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
82.7
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
81.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
80.8
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
80.8
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
80.4
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
80.1
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
79.5
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
79.1
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
77.7
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
77.1
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
76.7
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
76.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
76.3
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
73.2
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
73.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
72.9
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
71.5
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
70.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
70.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
69.8
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
68.8
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
68.1
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
67.9
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
67.1
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
66.5
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
66.4
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
65.8
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
65.1
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
62.8
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
62.7
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
62.7
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
61.9
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
61.0
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
60.8
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
60.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
60.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
60.3
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
60.1
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
59.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
59.5
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
59.2
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
58.8
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
57.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
57.5
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
57.1
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
56.6
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
55.7
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
55.5
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
55.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
55.4
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
54.9
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
54.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
53.9
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
52.2
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
52.1
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
51.8
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
50.4
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
50.2
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
50.2
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
49.9
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
49.2
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
49.2
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
49.1
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
49.0
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
48.2
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
47.8
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
47.7
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
47.5
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
47.5
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
46.8
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
46.6
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
46.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
45.5
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
45.4
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
45.3
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
45.0
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
44.7
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
43.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
43.8
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
42.2
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
41.9
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
41.5
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
41.0
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
40.5
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
40.4
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
39.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
39.8
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
39.6
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
39.1
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
39.0
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
39.0
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
36.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
35.9
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
35.7
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
35.3
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
34.8
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
34.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
33.9
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
33.7
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
33.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
32.9
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
31.1
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
30.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
29.7
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
29.1
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
29.0
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
28.9
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
28.4
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
28.3
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
28.2
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
28.2
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
27.1
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
27.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
25.7
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
25.6
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
25.4
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
24.6
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
24.5
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
23.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
23.4
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
22.9
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
22.8
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
22.7
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
22.4
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
22.4
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
22.1
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
22.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
20.7
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
20.7
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
19.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
19.5
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
19.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
19.2
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
19.0
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
18.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
18.9
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
17.7
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
17.1
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
16.6
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
16.6
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
16.5
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
16.2
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
16.2
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
16.1
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
16.1
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
15.1
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
14.7
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
14.4
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
13.3
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
12.8
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
12.0
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
11.7
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
10.5
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
10.4
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
10.1
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
8.5
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
8.2
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
7.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
27.4
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 27.4
Samples: 4
Max nTPM: 31.9
Min nTPM: 23.4
Sample A
Male
23.4
Sample B
Male
27.0
Sample C
Female
27.2
Sample D
Female
31.9
Hippocampal formation nTPM: 27.4
Samples: 4
Max nTPM: 31.6
Min nTPM: 24.4
Sample A
Male
31.6
Sample B
Male
28.9
Sample C
Female
24.4
Sample D
Female
24.8
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.