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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACAD11 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
68.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
63.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
63.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
55.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
54.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
54.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
49.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
46.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
45.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
44.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
43.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
42.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
41.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
41.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
40.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
40.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
40.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
39.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
38.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
37.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
37.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
37.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
36.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
36.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
35.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
35.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
35.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
34.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
33.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
33.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
33.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
33.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
32.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
32.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
32.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
32.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
31.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
30.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
30.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
30.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
29.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
29.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
29.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
28.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
27.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
27.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
27.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
27.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
27.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
26.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
26.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
26.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
26.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
26.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
25.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
25.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
25.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
25.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
25.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
25.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
25.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
24.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
24.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
24.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
23.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
22.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
22.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
22.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
22.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
21.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
21.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
21.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
21.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
20.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
20.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
20.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
19.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
19.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
19.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
18.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
18.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
18.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
18.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
17.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
17.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
14.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
8.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
5.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
5.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
4.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
4.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACAD11 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
32.7
Number of samples
231
Samples
Sample
Description
TPM
DO23534
0 years, male, NA, stage:2, alive, 840 days
251.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
229.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
147.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
137.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
131.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
117.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
103.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
71.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
68.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
67.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
67.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
66.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
65.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
64.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
62.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
61.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
61.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
60.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
60.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
59.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
58.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
58.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
58.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
57.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
56.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
55.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
52.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
50.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
50.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
50.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
49.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
48.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
48.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
48.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
47.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
46.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
46.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
46.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
46.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
46.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
45.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
44.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
44.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
44.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
44.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
43.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
42.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
42.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
42.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
42.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
42.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
41.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
41.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
41.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
39.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
39.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
38.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
38.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
38.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
37.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
37.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
37.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
37.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
37.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
37.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
36.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
36.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
35.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
35.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
35.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
35.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
35.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
34.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
34.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
34.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
34.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
33.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
33.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
32.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
32.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
32.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
32.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
31.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
31.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
30.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
30.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
30.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
30.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
30.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
30.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
30.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
30.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
29.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
29.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
29.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
29.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
29.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
29.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
29.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
28.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
28.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
28.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
27.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
27.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
27.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
27.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
27.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
26.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
26.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
26.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
25.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
25.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
25.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
25.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
25.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
25.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
25.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
25.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
25.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
25.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
24.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
24.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
24.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
24.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
23.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
23.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
23.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
23.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
23.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
22.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
22.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
21.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
20.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
20.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
20.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
20.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
18.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
17.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
16.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
9.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
981
Tumor
1.3
436
Normal
1.1
915
Tumor
1.1
742
Normal
0.9
452
Normal
0.9
314
Normal
0.9
227
Tumor
0.9
261
Tumor
0.9
448
Normal
0.9
128
Normal
0.9
258
Normal
0.9
412
Normal
0.9
228
Normal
0.9
1041
Tumor
0.8
428
Normal
0.8
232
Normal
0.8
648
Normal
0.8
426
Normal
0.8
954
Normal
0.8
494
Normal
0.8
356
Normal
0.8
616
Normal
0.8
741
Tumor
0.8
464
Normal
0.8
628
Normal
0.8
636
Normal
0.8
132
Normal
0.7
136
Normal
0.7
746
Normal
0.7
462
Normal
0.7
922
Normal
0.7
222
Normal
0.7
342
Normal
0.7
866
Normal
0.7
148
Normal
0.7
172
Normal
0.7
465
Tumor
0.7
414
Normal
0.7
466
Normal
0.7
666
Normal
0.7
564
Normal
0.7
824
Normal
0.7
568
Normal
0.7
868
Normal
0.7
852
Normal
0.7
432
Normal
0.7
642
Normal
0.7
354
Normal
0.7
358
Normal
0.7
864
Normal
0.7
257
Tumor
0.7
446
Normal
0.7
272
Normal
0.7
964
Normal
0.7
878
Normal
0.7
298
Normal
0.7
1046
Normal
0.7
111
Normal
0.7
816
Normal
0.7
514
Normal
0.7
615
Tumor
0.7
114
Normal
0.7
262
Normal
0.7
186
Normal
0.7
484
Normal
0.7
882
Normal
0.6
786
Normal
0.6
938
Normal
0.6
1022
Normal
0.6
286
Normal
0.6
278
Normal
0.6
738
Normal
0.6
914
Normal
0.6
196
Normal
0.6
332
Normal
0.6
874
Normal
0.6
1042
Normal
0.6
376
Normal
0.6
572
Normal
0.6
534
Normal
0.6
722
Normal
0.6
162
Normal
0.6
714
Normal
0.6
627
Tumor
0.6
362
Normal
0.6
662
Normal
0.6
214
Normal
0.5
384
Normal
0.5
1016
Normal
0.5
474
Normal
0.5
664
Normal
0.5
723
Tumor
0.5
396
Normal
0.5
456
Normal
0.5
538
Normal
0.5
218
Normal
0.5
477
Tumor
0.5
513
Tumor
0.5
884
Normal
0.5
546
Normal
0.5
416
Normal
0.5
944
Normal
0.5
363
Tumor
0.5
482
Normal
0.5
526
Normal
0.5
1032
Normal
0.5
1014
Normal
0.5
958
Normal
0.5
124
Normal
0.5
867
Tumor
0.5
982
Normal
0.5
518
Normal
0.5
312
Normal
0.5
138
Normal
0.4
268
Normal
0.4
926
Normal
0.4
925
Tumor
0.4
728
Normal
0.4
727
Tumor
0.4
978
Normal
0.4
744
Normal
0.4
686
Normal
0.4
528
Normal
0.4
328
Normal
0.4
284
Normal
0.4
392
Normal
0.4
481
Tumor
0.4
146
Normal
0.4
478
Normal
0.4
952
Normal
0.4
558
Normal
0.4
352
Normal
0.4
858
Normal
0.4
188
Normal
0.3
472
Normal
0.3
976
Normal
0.3
142
Normal
0.3
127
Tumor
0.3
968
Normal
0.3
716
Normal
0.3
126
Normal
0.3
966
Normal
0.3
924
Normal
0.3
386
Normal
0.3
696
Normal
0.3
145
Tumor
0.3
916
Normal
0.3
911
Tumor
0.3
756
Normal
0.3
755
Tumor
0.2
344
Normal
0.2
388
Normal
0.2
488
Normal
0.2
554
Normal
0.2
434
Normal
0.2
368
Normal
0.2
516
Normal
0.2
424
Normal
0.2
1026
Normal
0.2
745
Tumor
0.2
113
Tumor
0.2
778
Normal
0.2
862
Normal
0.2
524
Normal
0.1
984
Normal
0.1
435
Tumor
0.1
618
Normal
0.1
422
Normal
0.1
192
Normal
0.1
137
Tumor
0.1
364
Normal
0.1
195
Tumor
0.1
563
Tumor
0.1
1025
Tumor
0.1
451
Tumor
0.0
231
Tumor
0.0
1027
Tumor
0.0
366
Normal
0.0
468
Normal
0.0
353
Tumor
0.0
498
Normal
0.0
937
Tumor
0.0
685
Tumor
-0.1
851
Tumor
-0.1
857
Tumor
-0.1
361
Tumor
-0.1
217
Tumor
-0.1
713
Tumor
-0.1
698
Normal
-0.1
715
Tumor
-0.1
818
Normal
-0.1
1028
Normal
-0.1
912
Normal
-0.1
515
Tumor
-0.1
171
Tumor
-0.1
695
Tumor
-0.1
191
Tumor
-0.1
461
Tumor
-0.2
517
Tumor
-0.2
574
Normal
-0.2
873
Tumor
-0.2
394
Normal
-0.2
423
Tumor
-0.2
1044
Normal
-0.2
918
Normal
-0.2
557
Tumor
-0.2
571
Tumor
-0.3
785
Tumor
-0.3
913
Tumor
-0.3
672
Normal
-0.3
415
Tumor
-0.3
327
Tumor
-0.3
956
Normal
-0.3
411
Tumor
-0.3
533
Tumor
-0.3
187
Tumor
-0.3
393
Tumor
-0.3
267
Tumor
-0.3
537
Tumor
-0.4
212
Normal
-0.4
861
Tumor
-0.4
536
Normal
-0.4
141
Tumor
-0.4
1045
Tumor
-0.4
341
Tumor
-0.5
357
Tumor
-0.5
444
Normal
-0.5
391
Tumor
-0.5
487
Tumor
-0.5
112
Tumor
-0.5
447
Tumor
-0.5
185
Tumor
-0.5
483
Tumor
-0.5
123
Tumor
-0.5
953
Tumor
-0.6
567
Tumor
-0.6
721
Tumor
-0.6
433
Tumor
-0.6
1031
Tumor
-0.6
427
Tumor
-0.6
665
Tumor
-0.6
955
Tumor
-0.6
641
Tumor
-0.7
492
Normal
-0.7
814
Normal
-0.7
463
Tumor
-0.7
161
Tumor
-0.7
943
Tumor
-0.7
413
Tumor
-0.7
147
Tumor
-0.7
883
Tumor
-0.7
923
Tumor
-0.8
881
Tumor
-0.8
365
Tumor
-0.8
523
Tumor
-0.8
921
Tumor
-0.8
285
Tumor
-0.8
297
Tumor
-0.8
271
Tumor
-0.8
221
Tumor
-0.8
355
Tumor
-0.9
647
Tumor
-0.9
135
Tumor
-0.9
965
Tumor
-0.9
445
Tumor
-0.9
777
Tumor
-0.9
471
Tumor
-0.9
967
Tumor
-0.9
493
Tumor
-0.9
877
Tumor
-0.9
963
Tumor
-0.9
863
Tumor
-0.9
213
Tumor
-0.9
553
Tumor
-0.9
387
Tumor
-1.0
375
Tumor
-1.0
367
Tumor
-1.0
663
Tumor
-1.0
383
Tumor
-1.0
823
Tumor
-1.0
473
Tumor
-1.0
1015
Tumor
-1.0
977
Tumor
-1.0
421
Tumor
-1.0
865
Tumor
-1.1
313
Tumor
-1.1
331
Tumor
-1.1
737
Tumor
-1.1
125
Tumor
-1.1
975
Tumor
-1.2
1043
Tumor
-1.2
351
Tumor
-1.2
525
Tumor
-1.2
443
Tumor
-1.2
277
Tumor
-1.2
431
Tumor
-1.2
131
Tumor
-1.3
1013
Tumor
-1.3
983
Tumor
-1.3
467
Tumor
-1.3
425
Tumor
-1.3
617
Tumor
-1.3
535
Tumor
-1.3
815
Tumor
-1.3
635
Tumor
-1.3
1021
Tumor
-1.4
455
Tumor
-1.4
813
Tumor
-1.5
343
Tumor
-1.5
224
Normal
-1.5
311
Tumor
-1.5
491
Tumor
-1.5
497
Tumor
-1.5
917
Tumor
-1.5
743
Tumor
-1.5
527
Tumor
-1.6
573
Tumor
-1.6
957
Tumor
-1.6
545
Tumor
-1.6
724
Normal
-1.6
671
Tumor
-1.7
395
Tumor
-1.7
951
Tumor
-1.7
223
Tumor
-1.8
661
Tumor
-1.8
385
Tumor
-1.8
283
Tumor
-1.9
697
Tumor
-1.9
817
Tumor
-2.0
211
Tumor
-2.1
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.