We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PCDHGC3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
194.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
128.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
63.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
62.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
56.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
56.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
52.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
51.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
50.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
49.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
49.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
44.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
41.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
40.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
39.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
39.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
39.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
38.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
38.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
37.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
35.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
35.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
34.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
34.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
33.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
32.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
30.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
30.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
30.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
29.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
29.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
29.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
28.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
28.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
27.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
27.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
27.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
27.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
26.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
26.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
25.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
25.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
25.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
24.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
24.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
24.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
24.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
24.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
24.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
24.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
23.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
23.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
23.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
23.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
23.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
22.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
22.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
22.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
22.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
22.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
21.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
21.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
20.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
20.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
20.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
19.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
16.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
14.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
14.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
13.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
13.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
12.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
5.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
5.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
3.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
2.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PCDHGC3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.7
Number of samples
231
Samples
Sample
Description
TPM
DO45305
0 years, male, NA, stage:4, alive, 300 days
169.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
121.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
67.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
60.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
54.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
50.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
48.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
44.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
44.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
42.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
40.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
37.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
37.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
37.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
34.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
33.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
33.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
33.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
33.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
30.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
30.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
29.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
29.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
28.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
28.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
28.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
28.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
25.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
25.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
24.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
24.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
23.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
21.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
17.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
2.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
2.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
2.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
2.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
2.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
1.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
913
Tumor
1.4
488
Normal
1.1
192
Normal
1.0
981
Tumor
0.9
536
Normal
0.9
344
Normal
0.8
958
Normal
0.8
498
Normal
0.8
882
Normal
0.7
354
Normal
0.7
494
Normal
0.7
914
Normal
0.7
1044
Normal
0.7
514
Normal
0.7
352
Normal
0.7
1046
Normal
0.7
968
Normal
0.7
268
Normal
0.6
954
Normal
0.6
922
Normal
0.6
742
Normal
0.6
478
Normal
0.6
472
Normal
0.6
982
Normal
0.6
744
Normal
0.6
741
Tumor
0.6
964
Normal
0.6
311
Tumor
0.6
517
Tumor
0.5
976
Normal
0.5
926
Normal
0.5
492
Normal
0.5
918
Normal
0.5
342
Normal
0.5
146
Normal
0.5
738
Normal
0.5
1016
Normal
0.5
786
Normal
0.5
944
Normal
0.5
448
Normal
0.5
868
Normal
0.5
491
Tumor
0.5
232
Normal
0.5
526
Normal
0.5
1014
Normal
0.5
878
Normal
0.4
648
Normal
0.4
884
Normal
0.4
124
Normal
0.4
967
Tumor
0.4
1026
Normal
0.4
912
Normal
0.4
482
Normal
0.4
984
Normal
0.4
713
Tumor
0.4
447
Tumor
0.4
148
Normal
0.4
546
Normal
0.4
1045
Tumor
0.4
516
Normal
0.4
145
Tumor
0.4
814
Normal
0.4
1042
Normal
0.4
386
Normal
0.4
921
Tumor
0.3
262
Normal
0.3
214
Normal
0.3
126
Normal
0.3
188
Normal
0.3
462
Normal
0.3
553
Tumor
0.3
523
Tumor
0.3
545
Tumor
0.3
186
Normal
0.3
513
Tumor
0.3
142
Normal
0.3
191
Tumor
0.3
924
Normal
0.3
258
Normal
0.3
534
Normal
0.3
874
Normal
0.3
528
Normal
0.3
388
Normal
0.3
484
Normal
0.3
722
Normal
0.3
162
Normal
0.3
1022
Normal
0.3
343
Tumor
0.3
286
Normal
0.3
746
Normal
0.3
698
Normal
0.3
394
Normal
0.3
331
Tumor
0.2
714
Normal
0.2
963
Tumor
0.2
864
Normal
0.2
456
Normal
0.2
938
Normal
0.2
481
Tumor
0.2
393
Tumor
0.2
272
Normal
0.2
978
Normal
0.2
396
Normal
0.2
138
Normal
0.2
554
Normal
0.2
977
Tumor
0.2
666
Normal
0.2
185
Tumor
0.2
493
Tumor
0.2
664
Normal
0.2
172
Normal
0.2
778
Normal
0.2
723
Tumor
0.2
227
Tumor
0.2
195
Tumor
0.2
312
Normal
0.2
524
Normal
0.2
128
Normal
0.2
518
Normal
0.2
114
Normal
0.2
966
Normal
0.2
538
Normal
0.1
222
Normal
0.1
136
Normal
0.1
1028
Normal
0.1
196
Normal
0.1
873
Tumor
0.1
358
Normal
0.1
452
Normal
0.1
111
Normal
0.1
975
Tumor
0.1
728
Normal
0.1
464
Normal
0.1
387
Tumor
0.1
467
Tumor
0.1
221
Tumor
0.1
662
Normal
0.1
228
Normal
0.1
466
Normal
0.1
474
Normal
0.1
956
Normal
0.1
455
Tumor
0.1
527
Tumor
0.1
1032
Normal
0.1
218
Normal
0.1
223
Tumor
0.1
697
Tumor
0.1
1015
Tumor
0.1
141
Tumor
0.0
468
Normal
0.0
696
Normal
0.0
392
Normal
0.0
716
Normal
0.0
785
Tumor
0.0
132
Normal
0.0
756
Normal
0.0
1025
Tumor
0.0
187
Tumor
0.0
525
Tumor
0.0
955
Tumor
0.0
217
Tumor
0.0
224
Normal
0.0
284
Normal
0.0
353
Tumor
0.0
813
Tumor
0.0
113
Tumor
0.0
925
Tumor
0.0
672
Normal
0.0
862
Normal
0.0
916
Normal
-0.1
917
Tumor
-0.1
943
Tumor
-0.1
686
Normal
-0.1
395
Tumor
-0.1
487
Tumor
-0.1
213
Tumor
-0.1
866
Normal
-0.1
867
Tumor
-0.1
983
Tumor
-0.1
473
Tumor
-0.1
665
Tumor
-0.1
883
Tumor
-0.1
391
Tumor
-0.1
915
Tumor
-0.1
356
Normal
-0.1
461
Tumor
-0.1
297
Tumor
-0.1
278
Normal
-0.1
357
Tumor
-0.1
695
Tumor
-0.2
515
Tumor
-0.2
715
Tumor
-0.2
471
Tumor
-0.2
298
Normal
-0.2
212
Normal
-0.2
1041
Tumor
-0.2
271
Tumor
-0.2
1021
Tumor
-0.2
412
Normal
-0.3
137
Tumor
-0.3
416
Normal
-0.3
283
Tumor
-0.3
671
Tumor
-0.3
327
Tumor
-0.3
161
Tumor
-0.3
385
Tumor
-0.3
953
Tumor
-0.3
127
Tumor
-0.3
1043
Tumor
-0.3
477
Tumor
-0.3
125
Tumor
-0.3
257
Tumor
-0.3
112
Tumor
-0.3
483
Tumor
-0.3
451
Tumor
-0.3
1027
Tumor
-0.3
277
Tumor
-0.4
951
Tumor
-0.4
881
Tumor
-0.4
721
Tumor
-0.4
332
Normal
-0.4
1013
Tumor
-0.4
123
Tumor
-0.4
647
Tumor
-0.4
267
Tumor
-0.4
535
Tumor
-0.4
724
Normal
-0.4
364
Normal
-0.5
937
Tumor
-0.5
923
Tumor
-0.5
861
Tumor
-0.5
1031
Tumor
-0.5
341
Tumor
-0.5
952
Normal
-0.5
463
Tumor
-0.5
533
Tumor
-0.5
863
Tumor
-0.5
755
Tumor
-0.5
663
Tumor
-0.5
135
Tumor
-0.5
328
Normal
-0.6
147
Tumor
-0.6
965
Tumor
-0.6
231
Tumor
-0.6
537
Tumor
-0.6
261
Tumor
-0.6
777
Tumor
-0.6
745
Tumor
-0.7
285
Tumor
-0.7
313
Tumor
-0.8
171
Tumor
-0.8
211
Tumor
-0.8
911
Tumor
-0.8
314
Normal
-0.8
737
Tumor
-0.8
465
Tumor
-0.8
351
Tumor
-0.8
411
Tumor
-0.8
661
Tumor
-0.9
685
Tumor
-0.9
865
Tumor
-0.9
415
Tumor
-0.9
877
Tumor
-1.0
131
Tumor
-1.0
957
Tumor
-1.1
743
Tumor
-1.1
363
Tumor
-1.1
727
Tumor
-1.2
497
Tumor
-1.4
355
Tumor
-1.5
361
Tumor
N/A
362
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
367
Tumor
N/A
368
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
615
Tumor
N/A
857
Tumor
N/A
616
Normal
N/A
858
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
433
Tumor
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
573
Tumor
N/A
574
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
