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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMB9 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
73.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
73.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
32.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
24.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
24.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
23.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
22.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
21.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
20.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
18.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
16.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
13.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
8.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
6.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
5.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
3.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
3.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
2.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
2.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMB9 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
42.3
Number of samples
231
Samples
Sample
Description
TPM
DO45277
0 years, male, NA, stage:3, alive, 600 days
310.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
267.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
205.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
185.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
182.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
181.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
181.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
178.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
150.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
148.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
143.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
143.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
130.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
114.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
112.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
109.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
108.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
108.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
102.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
100.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
97.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
88.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
82.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
80.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
79.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
79.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
76.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
75.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
75.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
73.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
71.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
71.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
71.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
67.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
67.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
66.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
64.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
63.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
62.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
62.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
61.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
61.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
61.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
59.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
59.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
59.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
57.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
56.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
56.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
56.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
55.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
54.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
53.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
53.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
51.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
50.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
50.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
49.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
48.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
47.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
47.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
47.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
47.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
46.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
45.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
45.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
45.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
45.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
45.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
45.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
44.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
44.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
43.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
43.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
42.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
42.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
42.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
42.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
41.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
41.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
41.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
40.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
40.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
40.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
39.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
39.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
39.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
39.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
38.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
38.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
38.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
37.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
37.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
36.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
35.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
34.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
34.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
33.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
33.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
33.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
32.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
32.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
31.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
31.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
31.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
31.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
31.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
31.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
31.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
30.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
30.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
29.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
29.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
29.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
29.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
29.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
29.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
28.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
28.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
28.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
27.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
27.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
27.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
27.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
26.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
26.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
26.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
26.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
25.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
24.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
24.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
24.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
24.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
23.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
23.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
23.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
23.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
22.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
22.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
22.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
21.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
21.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
20.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
19.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
19.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
18.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
17.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
16.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
724
Normal
1.0
978
Normal
0.7
434
Normal
0.7
188
Normal
0.7
213
Tumor
0.6
262
Normal
0.6
914
Normal
0.6
147
Tumor
0.6
861
Tumor
0.6
1043
Tumor
0.6
755
Tumor
0.6
366
Normal
0.6
777
Tumor
0.6
1031
Tumor
0.6
663
Tumor
0.6
362
Normal
0.6
113
Tumor
0.5
432
Normal
0.5
627
Tumor
0.5
917
Tumor
0.5
383
Tumor
0.5
966
Normal
0.5
557
Tumor
0.5
327
Tumor
0.5
661
Tumor
0.4
523
Tumor
0.4
516
Normal
0.4
1015
Tumor
0.4
416
Normal
0.4
195
Tumor
0.4
218
Normal
0.4
311
Tumor
0.4
217
Tumor
0.4
884
Normal
0.4
857
Tumor
0.4
191
Tumor
0.4
456
Normal
0.4
514
Normal
0.3
867
Tumor
0.3
524
Normal
0.3
211
Tumor
0.3
126
Normal
0.3
952
Normal
0.3
487
Tumor
0.3
146
Normal
0.3
386
Normal
0.3
925
Tumor
0.3
662
Normal
0.3
685
Tumor
0.3
467
Tumor
0.3
721
Tumor
0.3
686
Normal
0.3
1042
Normal
0.3
212
Normal
0.3
926
Normal
0.3
272
Normal
0.3
1045
Tumor
0.3
376
Normal
0.3
353
Tumor
0.3
127
Tumor
0.2
172
Normal
0.2
384
Normal
0.2
916
Normal
0.2
312
Normal
0.2
436
Normal
0.2
756
Normal
0.2
375
Tumor
0.2
922
Normal
0.2
161
Tumor
0.2
452
Normal
0.2
358
Normal
0.2
513
Tumor
0.2
414
Normal
0.2
387
Tumor
0.2
368
Normal
0.2
558
Normal
0.2
814
Normal
0.2
258
Normal
0.2
628
Normal
0.2
852
Normal
0.2
162
Normal
0.2
192
Normal
0.2
313
Tumor
0.2
664
Normal
0.2
716
Normal
0.2
461
Tumor
0.2
114
Normal
0.2
341
Tumor
0.2
396
Normal
0.2
666
Normal
0.2
883
Tumor
0.2
186
Normal
0.2
955
Tumor
0.2
268
Normal
0.2
224
Normal
0.2
823
Tumor
0.2
778
Normal
0.1
365
Tumor
0.1
518
Normal
0.1
148
Normal
0.1
261
Tumor
0.1
138
Normal
0.1
816
Normal
0.1
343
Tumor
0.1
818
Normal
0.1
455
Tumor
0.1
278
Normal
0.1
915
Tumor
0.1
1013
Tumor
0.1
526
Normal
0.1
858
Normal
0.1
228
Normal
0.1
451
Tumor
0.1
286
Normal
0.1
536
Normal
0.1
865
Tumor
0.1
873
Tumor
0.1
1044
Normal
0.1
574
Normal
0.1
468
Normal
0.1
284
Normal
0.1
913
Tumor
0.1
422
Normal
0.1
956
Normal
0.1
136
Normal
0.1
355
Tumor
0.1
342
Normal
0.1
984
Normal
0.1
332
Normal
0.1
482
Normal
0.1
141
Tumor
0.1
528
Normal
0.1
446
Normal
0.1
222
Normal
0.1
786
Normal
0.1
443
Tumor
0.1
298
Normal
0.1
428
Normal
0.1
498
Normal
0.1
214
Normal
0.1
695
Tumor
0.1
741
Tumor
0.1
344
Normal
0.1
714
Normal
0.1
185
Tumor
0.0
388
Normal
0.0
696
Normal
0.0
1016
Normal
0.0
954
Normal
0.0
1022
Normal
0.0
824
Normal
0.0
742
Normal
0.0
352
Normal
0.0
977
Tumor
0.0
426
Normal
0.0
128
Normal
0.0
982
Normal
0.0
392
Normal
0.0
785
Tumor
0.0
964
Normal
0.0
722
Normal
0.0
448
Normal
0.0
472
Normal
0.0
354
Normal
0.0
493
Tumor
0.0
394
Normal
0.0
497
Tumor
0.0
924
Normal
0.0
314
Normal
0.0
494
Normal
0.0
698
Normal
0.0
918
Normal
0.0
874
Normal
0.0
444
Normal
0.0
1026
Normal
0.0
912
Normal
0.0
364
Normal
0.0
1028
Normal
0.0
137
Tumor
0.0
953
Tumor
0.0
465
Tumor
0.0
464
Normal
0.0
132
Normal
0.0
745
Tumor
0.0
492
Normal
0.0
196
Normal
0.0
1014
Normal
0.0
882
Normal
0.0
361
Tumor
0.0
938
Normal
0.0
187
Tumor
0.0
862
Normal
0.0
573
Tumor
0.0
642
Normal
0.0
866
Normal
0.0
415
Tumor
0.0
958
Normal
0.0
1046
Normal
0.0
738
Normal
0.0
395
Tumor
0.0
145
Tumor
0.0
728
Normal
-0.1
111
Normal
-0.1
424
Normal
-0.1
868
Normal
-0.1
568
Normal
-0.1
328
Normal
-0.1
951
Tumor
-0.1
538
Normal
-0.1
124
Normal
-0.1
445
Tumor
-0.1
616
Normal
-0.1
968
Normal
-0.1
615
Tumor
-0.1
534
Normal
-0.1
412
Normal
-0.1
618
Normal
-0.1
554
Normal
-0.1
484
Normal
-0.1
546
Normal
-0.1
462
Normal
-0.1
474
Normal
-0.1
488
Normal
-0.1
478
Normal
-0.1
142
Normal
-0.1
672
Normal
-0.1
433
Tumor
-0.1
385
Tumor
-0.1
864
Normal
-0.1
572
Normal
-0.1
391
Tumor
-0.1
125
Tumor
-0.1
232
Normal
-0.1
423
Tumor
-0.1
963
Tumor
-0.1
564
Normal
-0.1
431
Tumor
-0.1
723
Tumor
-0.1
221
Tumor
-0.1
357
Tumor
-0.2
746
Normal
-0.2
617
Tumor
-0.2
471
Tumor
-0.2
466
Normal
-0.2
267
Tumor
-0.2
813
Tumor
-0.2
393
Tumor
-0.2
744
Normal
-0.2
937
Tumor
-0.2
1032
Normal
-0.2
957
Tumor
-0.2
356
Normal
-0.2
635
Tumor
-0.2
648
Normal
-0.2
277
Tumor
-0.2
563
Tumor
-0.2
525
Tumor
-0.2
976
Normal
-0.2
481
Tumor
-0.2
535
Tumor
-0.2
1027
Tumor
-0.2
636
Normal
-0.2
421
Tumor
-0.2
411
Tumor
-0.2
447
Tumor
-0.2
727
Tumor
-0.2
944
Normal
-0.2
923
Tumor
-0.3
863
Tumor
-0.3
123
Tumor
-0.3
135
Tumor
-0.3
515
Tumor
-0.3
943
Tumor
-0.3
231
Tumor
-0.3
477
Tumor
-0.3
851
Tumor
-0.3
223
Tumor
-0.3
647
Tumor
-0.3
981
Tumor
-0.3
878
Normal
-0.4
297
Tumor
-0.4
881
Tumor
-0.4
737
Tumor
-0.4
491
Tumor
-0.4
533
Tumor
-0.4
553
Tumor
-0.4
171
Tumor
-0.4
975
Tumor
-0.4
641
Tumor
-0.4
413
Tumor
-0.4
911
Tumor
-0.4
257
Tumor
-0.4
567
Tumor
-0.4
463
Tumor
-0.5
425
Tumor
-0.5
271
Tumor
-0.5
1041
Tumor
-0.5
427
Tumor
-0.5
713
Tumor
-0.5
527
Tumor
-0.5
283
Tumor
-0.5
227
Tumor
-0.5
473
Tumor
-0.5
665
Tumor
-0.6
112
Tumor
-0.6
367
Tumor
-0.6
715
Tumor
-0.6
435
Tumor
-0.6
817
Tumor
-0.6
517
Tumor
-0.7
1021
Tumor
-0.7
351
Tumor
-0.7
697
Tumor
-0.8
571
Tumor
-0.8
1025
Tumor
-0.8
815
Tumor
-0.8
983
Tumor
-0.8
967
Tumor
-0.8
483
Tumor
-0.8
877
Tumor
-0.8
363
Tumor
-0.9
537
Tumor
-0.9
921
Tumor
-0.9
545
Tumor
-1.0
671
Tumor
-1.0
331
Tumor
-1.1
131
Tumor
-1.1
965
Tumor
-1.3
285
Tumor
-1.4
743
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
