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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KIFC1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
62.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
59.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
51.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
46.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
46.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
36.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
35.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
32.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
32.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
31.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
30.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
30.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
29.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
27.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
27.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
25.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
25.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
25.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
24.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
22.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
22.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
20.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
19.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
18.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
9.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
4.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
2.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
2.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
2.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KIFC1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.1
Number of samples
231
Samples
Sample
Description
TPM
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
24.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
24.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
4.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
3.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
3.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
2.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
2.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
2.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
2.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
2.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
2.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
2.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
2.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
2.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
1.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
1.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
1.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
1.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
1.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
1.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
1.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
1.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
1.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
1.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
1.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
1.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
1.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
1.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
1.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
1.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
497
Tumor
1.3
1013
Tumor
1.2
351
Tumor
1.0
965
Tumor
1.0
493
Tumor
0.9
385
Tumor
0.9
951
Tumor
0.9
921
Tumor
0.8
957
Tumor
0.8
983
Tumor
0.8
357
Tumor
0.7
953
Tumor
0.7
977
Tumor
0.7
435
Tumor
0.7
343
Tumor
0.6
411
Tumor
0.6
923
Tumor
0.6
737
Tumor
0.6
727
Tumor
0.6
285
Tumor
0.6
211
Tumor
0.6
661
Tumor
0.6
943
Tumor
0.6
131
Tumor
0.6
463
Tumor
0.5
283
Tumor
0.5
491
Tumor
0.5
355
Tumor
0.5
671
Tumor
0.5
743
Tumor
0.5
387
Tumor
0.5
123
Tumor
0.5
663
Tumor
0.4
913
Tumor
0.4
815
Tumor
0.4
635
Tumor
0.4
331
Tumor
0.4
341
Tumor
0.3
695
Tumor
0.3
535
Tumor
0.3
865
Tumor
0.3
851
Tumor
0.3
391
Tumor
0.3
863
Tumor
0.3
745
Tumor
0.3
817
Tumor
0.3
145
Tumor
0.3
861
Tumor
0.3
277
Tumor
0.3
481
Tumor
0.3
1022
Normal
0.3
191
Tumor
0.3
967
Tumor
0.3
413
Tumor
0.3
617
Tumor
0.3
127
Tumor
0.3
917
Tumor
0.3
937
Tumor
0.2
447
Tumor
0.2
142
Normal
0.2
482
Normal
0.2
425
Tumor
0.2
537
Tumor
0.2
464
Normal
0.2
487
Tumor
0.2
741
Tumor
0.2
527
Tumor
0.2
868
Normal
0.2
1028
Normal
0.2
1027
Tumor
0.2
488
Normal
0.2
313
Tumor
0.2
1026
Normal
0.2
724
Normal
0.2
533
Tumor
0.2
1032
Normal
0.2
755
Tumor
0.2
445
Tumor
0.1
1045
Tumor
0.1
627
Tumor
0.1
1043
Tumor
0.1
911
Tumor
0.1
862
Normal
0.1
146
Normal
0.1
474
Normal
0.1
498
Normal
0.1
554
Normal
0.1
513
Tumor
0.1
526
Normal
0.1
135
Tumor
0.1
956
Normal
0.1
528
Normal
0.1
823
Tumor
0.1
141
Tumor
0.1
912
Normal
0.1
867
Tumor
0.1
1042
Normal
0.1
484
Normal
0.1
257
Tumor
0.1
873
Tumor
0.1
472
Normal
0.1
746
Normal
0.1
882
Normal
0.1
647
Tumor
0.1
426
Normal
0.1
518
Normal
0.1
125
Tumor
0.1
483
Tumor
0.1
112
Tumor
0.1
955
Tumor
0.1
874
Normal
0.1
1031
Tumor
0.1
914
Normal
0.1
523
Tumor
0.0
221
Tumor
0.0
814
Normal
0.0
456
Normal
0.0
975
Tumor
0.0
423
Tumor
0.0
455
Tumor
0.0
161
Tumor
0.0
615
Tumor
0.0
534
Normal
0.0
473
Tumor
0.0
516
Normal
0.0
877
Tumor
0.0
431
Tumor
0.0
462
Normal
0.0
422
Normal
0.0
925
Tumor
0.0
558
Normal
0.0
465
Tumor
0.0
864
Normal
0.0
494
Normal
0.0
314
Normal
0.0
332
Normal
0.0
778
Normal
0.0
196
Normal
0.0
963
Tumor
0.0
171
Tumor
0.0
545
Tumor
0.0
553
Tumor
0.0
227
Tumor
0.0
113
Tumor
0.0
467
Tumor
0.0
278
Normal
0.0
138
Normal
0.0
298
Normal
0.0
524
Normal
0.0
571
Tumor
0.0
218
Normal
0.0
428
Normal
0.0
756
Normal
0.0
424
Normal
0.0
376
Normal
0.0
517
Tumor
0.0
514
Normal
0.0
443
Tumor
0.0
224
Normal
0.0
461
Tumor
0.0
362
Normal
0.0
477
Tumor
0.0
393
Tumor
0.0
136
Normal
0.0
777
Tumor
0.0
1021
Tumor
0.0
884
Normal
0.0
952
Normal
0.0
568
Normal
0.0
363
Tumor
0.0
665
Tumor
0.0
195
Tumor
0.0
685
Tumor
0.0
964
Normal
0.0
368
Normal
0.0
312
Normal
-0.1
938
Normal
-0.1
466
Normal
-0.1
492
Normal
-0.1
538
Normal
-0.1
214
Normal
-0.1
478
Normal
-0.1
384
Normal
-0.1
132
Normal
-0.1
358
Normal
-0.1
944
Normal
-0.1
976
Normal
-0.1
284
Normal
-0.1
857
Tumor
-0.1
883
Tumor
-0.1
327
Tumor
-0.1
915
Tumor
-0.1
813
Tumor
-0.1
721
Tumor
-0.1
148
Normal
-0.1
451
Tumor
-0.1
536
Normal
-0.1
365
Tumor
-0.1
572
Normal
-0.1
546
Normal
-0.1
415
Tumor
-0.1
212
Normal
-0.1
852
Normal
-0.1
881
Tumor
-0.1
217
Tumor
-0.1
866
Normal
-0.1
192
Normal
-0.1
878
Normal
-0.1
567
Tumor
-0.1
978
Normal
-0.1
1025
Tumor
-0.1
982
Normal
-0.1
421
Tumor
-0.1
222
Normal
-0.1
364
Normal
-0.1
446
Normal
-0.1
228
Normal
-0.1
213
Tumor
-0.1
434
Normal
-0.1
414
Normal
-0.1
356
Normal
-0.1
618
Normal
-0.1
713
Tumor
-0.1
1041
Tumor
-0.1
816
Normal
-0.1
722
Normal
-0.1
436
Normal
-0.1
432
Normal
-0.1
1014
Normal
-0.1
786
Normal
-0.1
564
Normal
-0.1
563
Tumor
-0.1
574
Normal
-0.1
361
Tumor
-0.1
525
Tumor
-0.1
433
Tumor
-0.1
366
Normal
-0.1
416
Normal
-0.1
616
Normal
-0.1
162
Normal
-0.1
628
Normal
-0.1
223
Tumor
-0.1
557
Tumor
-0.2
258
Normal
-0.2
641
Tumor
-0.2
515
Tumor
-0.2
968
Normal
-0.2
573
Tumor
-0.2
958
Normal
-0.2
924
Normal
-0.2
723
Tumor
-0.2
344
Normal
-0.2
126
Normal
-0.2
354
Normal
-0.2
738
Normal
-0.2
352
Normal
-0.2
342
Normal
-0.2
966
Normal
-0.2
1015
Tumor
-0.2
672
Normal
-0.2
311
Tumor
-0.2
1046
Normal
-0.2
916
Normal
-0.2
412
Normal
-0.2
172
Normal
-0.2
686
Normal
-0.2
267
Tumor
-0.2
375
Tumor
-0.2
954
Normal
-0.2
468
Normal
-0.2
448
Normal
-0.2
396
Normal
-0.2
114
Normal
-0.2
271
Tumor
-0.2
984
Normal
-0.2
714
Normal
-0.2
636
Normal
-0.2
918
Normal
-0.2
328
Normal
-0.2
128
Normal
-0.2
383
Tumor
-0.2
147
Tumor
-0.2
728
Normal
-0.2
286
Normal
-0.2
392
Normal
-0.2
111
Normal
-0.2
427
Tumor
-0.2
272
Normal
-0.3
698
Normal
-0.3
716
Normal
-0.3
124
Normal
-0.3
1016
Normal
-0.3
186
Normal
-0.3
1044
Normal
-0.3
187
Tumor
-0.3
785
Tumor
-0.3
444
Normal
-0.3
648
Normal
-0.3
824
Normal
-0.3
715
Tumor
-0.3
353
Tumor
-0.3
642
Normal
-0.3
394
Normal
-0.3
367
Tumor
-0.3
744
Normal
-0.3
268
Normal
-0.3
858
Normal
-0.3
696
Normal
-0.3
262
Normal
-0.3
742
Normal
-0.3
261
Tumor
-0.3
185
Tumor
-0.3
664
Normal
-0.3
666
Normal
-0.3
386
Normal
-0.3
922
Normal
-0.3
232
Normal
-0.3
297
Tumor
-0.3
471
Tumor
-0.4
697
Tumor
-0.4
662
Normal
-0.4
188
Normal
-0.4
388
Normal
-0.4
231
Tumor
-0.4
818
Normal
-0.4
395
Tumor
-0.4
926
Normal
-0.4
452
Normal
-0.4
981
Tumor
-0.5
137
Tumor
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
