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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CDKN2AIPNL is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
153.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
66.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
58.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
56.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
53.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
46.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
46.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
44.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
44.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
43.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
42.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
42.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
41.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
40.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
40.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
40.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
39.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
39.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
39.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
38.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
37.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
36.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
36.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
36.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
36.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
35.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
35.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
35.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
35.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
35.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
34.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
34.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
34.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
34.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
33.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
32.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
32.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
32.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
32.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
32.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
31.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
31.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
30.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
30.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
30.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
29.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
29.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
29.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
28.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
28.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
28.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
28.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
28.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
28.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
28.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
28.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
28.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
28.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
28.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
28.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
28.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
27.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
27.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
27.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
27.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
27.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
27.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
27.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
27.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
26.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
26.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
26.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
26.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
26.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
26.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
26.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
26.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
26.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
25.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
25.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
25.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
25.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
25.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
25.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
25.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
25.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
25.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
25.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
24.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
24.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
24.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
24.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
24.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
24.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
24.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
24.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
24.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
23.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
23.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
23.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
23.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
23.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
23.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
23.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
23.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
23.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
22.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
22.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
22.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
22.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
22.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
22.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
22.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
22.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
22.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
22.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
21.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
21.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
21.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
21.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
21.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
21.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
21.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
21.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
21.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
21.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
20.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
20.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
20.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
20.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
20.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
20.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
19.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
19.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
19.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
19.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
19.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
19.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
19.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
19.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
18.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
18.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
18.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
18.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
18.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
18.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
18.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
18.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
18.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
18.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
18.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
17.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
17.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
16.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
16.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
16.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
14.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
13.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CDKN2AIPNL is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.2
Number of samples
231
Samples
Sample
Description
TPM
DO45173
0 years, male, NA, stage:3, alive, 1170 days
54.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
40.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
31.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
30.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
29.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
29.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
29.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
27.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
26.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
25.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
24.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
24.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
23.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
23.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
22.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
22.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
22.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
22.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
21.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
21.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
21.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
20.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
20.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
18.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
18.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
18.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
17.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
16.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
16.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
967
Tumor
1.4
351
Tumor
1.3
387
Tumor
1.2
473
Tumor
1.2
331
Tumor
1.1
877
Tumor
1.1
357
Tumor
1.0
517
Tumor
0.9
957
Tumor
0.9
455
Tumor
0.8
963
Tumor
0.8
1013
Tumor
0.8
671
Tumor
0.8
375
Tumor
0.8
635
Tumor
0.7
533
Tumor
0.7
661
Tumor
0.7
647
Tumor
0.7
537
Tumor
0.7
883
Tumor
0.7
815
Tumor
0.7
355
Tumor
0.7
433
Tumor
0.6
545
Tumor
0.6
127
Tumor
0.6
937
Tumor
0.6
435
Tumor
0.6
497
Tumor
0.6
983
Tumor
0.6
313
Tumor
0.6
311
Tumor
0.6
573
Tumor
0.6
425
Tumor
0.5
131
Tumor
0.5
431
Tumor
0.5
515
Tumor
0.5
341
Tumor
0.5
975
Tumor
0.5
461
Tumor
0.5
383
Tumor
0.5
297
Tumor
0.5
423
Tumor
0.5
483
Tumor
0.5
615
Tumor
0.5
535
Tumor
0.5
283
Tumor
0.5
715
Tumor
0.4
477
Tumor
0.4
171
Tumor
0.4
185
Tumor
0.4
977
Tumor
0.4
367
Tumor
0.4
395
Tumor
0.3
411
Tumor
0.3
513
Tumor
0.3
881
Tumor
0.3
213
Tumor
0.3
743
Tumor
0.3
663
Tumor
0.3
147
Tumor
0.3
112
Tumor
0.3
563
Tumor
0.3
217
Tumor
0.3
447
Tumor
0.3
187
Tumor
0.3
277
Tumor
0.3
343
Tumor
0.3
695
Tumor
0.3
665
Tumor
0.3
953
Tumor
0.2
211
Tumor
0.2
191
Tumor
0.2
445
Tumor
0.2
365
Tumor
0.2
125
Tumor
0.2
966
Normal
0.2
135
Tumor
0.2
413
Tumor
0.2
465
Tumor
0.2
951
Tumor
0.2
1021
Tumor
0.2
427
Tumor
0.2
268
Normal
0.2
567
Tumor
0.1
925
Tumor
0.1
648
Normal
0.1
471
Tumor
0.1
1045
Tumor
0.1
737
Tumor
0.1
161
Tumor
0.1
785
Tumor
0.1
221
Tumor
0.1
745
Tumor
0.1
1015
Tumor
0.1
257
Tumor
0.1
463
Tumor
0.1
627
Tumor
0.1
415
Tumor
0.1
744
Normal
0.1
1041
Tumor
0.1
777
Tumor
0.1
214
Normal
0.0
662
Normal
0.0
353
Tumor
0.0
451
Tumor
0.0
943
Tumor
0.0
113
Tumor
0.0
498
Normal
0.0
196
Normal
0.0
312
Normal
0.0
685
Tumor
0.0
921
Tumor
0.0
145
Tumor
0.0
361
Tumor
0.0
393
Tumor
0.0
421
Tumor
0.0
384
Normal
0.0
188
Normal
0.0
123
Tumor
0.0
858
Normal
0.0
817
Tumor
-0.1
861
Tumor
-0.1
823
Tumor
-0.1
444
Normal
-0.1
1031
Tumor
-0.1
356
Normal
-0.1
493
Tumor
-0.1
222
Normal
-0.1
664
Normal
-0.1
278
Normal
-0.1
192
Normal
-0.1
218
Normal
-0.1
976
Normal
-0.1
965
Tumor
-0.1
141
Tumor
-0.1
741
Tumor
-0.1
271
Tumor
-0.1
867
Tumor
-0.1
723
Tumor
-0.1
227
Tumor
-0.1
917
Tumor
-0.1
195
Tumor
-0.2
738
Normal
-0.2
478
Normal
-0.2
142
Normal
-0.2
523
Tumor
-0.2
354
Normal
-0.2
368
Normal
-0.2
981
Tumor
-0.2
724
Normal
-0.2
376
Normal
-0.2
298
Normal
-0.2
258
Normal
-0.2
467
Tumor
-0.2
443
Tumor
-0.2
363
Tumor
-0.2
232
Normal
-0.2
814
Normal
-0.2
526
Normal
-0.2
954
Normal
-0.2
481
Tumor
-0.2
172
Normal
-0.2
267
Tumor
-0.2
432
Normal
-0.2
938
Normal
-0.2
914
Normal
-0.2
525
Tumor
-0.2
162
Normal
-0.2
617
Tumor
-0.2
148
Normal
-0.2
642
Normal
-0.2
742
Normal
-0.3
332
Normal
-0.3
285
Tumor
-0.3
487
Tumor
-0.3
696
Normal
-0.3
388
Normal
-0.3
641
Tumor
-0.3
314
Normal
-0.3
358
Normal
-0.3
412
Normal
-0.3
618
Normal
-0.3
223
Tumor
-0.3
484
Normal
-0.3
571
Tumor
-0.3
536
Normal
-0.3
261
Tumor
-0.3
628
Normal
-0.3
514
Normal
-0.3
366
Normal
-0.3
714
Normal
-0.3
746
Normal
-0.3
863
Tumor
-0.3
416
Normal
-0.3
672
Normal
-0.3
697
Tumor
-0.3
436
Normal
-0.3
534
Normal
-0.3
873
Tumor
-0.3
352
Normal
-0.3
262
Normal
-0.3
713
Tumor
-0.3
364
Normal
-0.3
394
Normal
-0.3
557
Tumor
-0.3
186
Normal
-0.3
491
Tumor
-0.3
446
Normal
-0.3
212
Normal
-0.3
342
Normal
-0.3
391
Tumor
-0.3
865
Tumor
-0.4
284
Normal
-0.4
468
Normal
-0.4
344
Normal
-0.4
328
Normal
-0.4
666
Normal
-0.4
516
Normal
-0.4
224
Normal
-0.4
553
Tumor
-0.4
572
Normal
-0.4
721
Tumor
-0.4
231
Tumor
-0.4
968
Normal
-0.4
964
Normal
-0.4
474
Normal
-0.4
492
Normal
-0.4
616
Normal
-0.4
434
Normal
-0.4
716
Normal
-0.4
392
Normal
-0.4
958
Normal
-0.4
913
Tumor
-0.4
915
Tumor
-0.4
362
Normal
-0.5
722
Normal
-0.5
396
Normal
-0.5
636
Normal
-0.5
414
Normal
-0.5
126
Normal
-0.5
424
Normal
-0.5
464
Normal
-0.5
132
Normal
-0.5
428
Normal
-0.5
138
Normal
-0.5
466
Normal
-0.5
327
Tumor
-0.5
482
Normal
-0.5
786
Normal
-0.5
978
Normal
-0.5
944
Normal
-0.5
755
Tumor
-0.5
386
Normal
-0.5
422
Normal
-0.5
114
Normal
-0.5
558
Normal
-0.5
137
Tumor
-0.5
136
Normal
-0.5
462
Normal
-0.5
857
Tumor
-0.5
518
Normal
-0.5
456
Normal
-0.5
1046
Normal
-0.5
1027
Tumor
-0.6
911
Tumor
-0.6
568
Normal
-0.6
1043
Tumor
-0.6
385
Tumor
-0.6
1014
Normal
-0.6
426
Normal
-0.6
472
Normal
-0.6
146
Normal
-0.6
128
Normal
-0.6
955
Tumor
-0.6
956
Normal
-0.6
574
Normal
-0.6
778
Normal
-0.6
728
Normal
-0.6
452
Normal
-0.6
727
Tumor
-0.6
564
Normal
-0.6
698
Normal
-0.6
1016
Normal
-0.6
1044
Normal
-0.6
488
Normal
-0.6
926
Normal
-0.7
448
Normal
-0.7
878
Normal
-0.7
686
Normal
-0.7
538
Normal
-0.7
852
Normal
-0.7
984
Normal
-0.7
813
Tumor
-0.7
1042
Normal
-0.7
524
Normal
-0.7
286
Normal
-0.8
884
Normal
-0.8
982
Normal
-0.8
851
Tumor
-0.8
874
Normal
-0.8
494
Normal
-0.8
864
Normal
-0.8
1032
Normal
-0.8
824
Normal
-0.8
912
Normal
-0.8
1025
Tumor
-0.8
882
Normal
-0.8
756
Normal
-0.8
866
Normal
-0.9
228
Normal
-0.9
124
Normal
-0.9
546
Normal
-0.9
554
Normal
-1.0
918
Normal
-1.0
868
Normal
-1.0
111
Normal
-1.0
816
Normal
-1.0
916
Normal
-1.1
1026
Normal
-1.1
1022
Normal
-1.2
952
Normal
-1.2
862
Normal
-1.3
527
Tumor
-1.3
528
Normal
-1.3
922
Normal
-1.4
924
Normal
-1.4
818
Normal
-1.5
923
Tumor
-2.0
1028
Normal
-2.7
272
Normal
-2.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
