We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRIM26 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
35.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
30.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
28.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
26.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
26.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
25.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
24.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
22.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
21.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
20.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
20.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
19.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
14.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
8.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
3.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
3.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
2.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRIM26 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.9
Number of samples
231
Samples
Sample
Description
TPM
DO23528
0 years, female, NA, stage:2, alive, 1020 days
93.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
73.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
61.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
60.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
60.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
57.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
56.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
55.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
55.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
55.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
54.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
52.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
52.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
49.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
49.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
49.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
48.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
48.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
46.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
45.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
45.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
44.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
44.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
44.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
43.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
43.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
43.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
42.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
42.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
42.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
41.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
41.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
40.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
40.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
39.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
39.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
38.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
38.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
38.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
38.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
37.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
37.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
37.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
37.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
37.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
36.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
36.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
36.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
35.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
35.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
35.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
35.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
35.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
35.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
35.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
34.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
34.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
34.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
34.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
34.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
34.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
34.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
34.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
34.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
34.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
34.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
33.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
33.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
33.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
32.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
32.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
32.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
32.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
31.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
31.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
31.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
30.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
30.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
30.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
30.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
30.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
30.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
29.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
29.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
29.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
29.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
28.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
28.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
28.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
28.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
28.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
28.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
28.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
28.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
28.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
28.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
27.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
27.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
27.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
27.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
27.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
27.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
27.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
26.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
26.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
26.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
26.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
26.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
26.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
26.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
26.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
26.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
26.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
26.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
25.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
25.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
25.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
25.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
25.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
25.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
25.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
25.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
25.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
25.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
25.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
25.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
25.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
25.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
25.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
25.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
24.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
24.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
24.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
24.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
24.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
24.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
24.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
24.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
24.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
24.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
24.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
24.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
23.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
23.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
23.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
22.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
22.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
22.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
22.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
22.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
22.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
21.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
21.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
21.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
21.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
20.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
20.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
20.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
19.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
19.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
18.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
18.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
15.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
695
Tumor
1.1
957
Tumor
0.9
357
Tumor
0.8
533
Tumor
0.7
755
Tumor
0.7
953
Tumor
0.6
493
Tumor
0.6
473
Tumor
0.6
445
Tumor
0.6
171
Tumor
0.6
497
Tumor
0.6
131
Tumor
0.5
1027
Tumor
0.5
112
Tumor
0.5
367
Tumor
0.5
411
Tumor
0.5
923
Tumor
0.5
355
Tumor
0.5
313
Tumor
0.5
413
Tumor
0.4
977
Tumor
0.4
211
Tumor
0.4
937
Tumor
0.4
815
Tumor
0.4
465
Tumor
0.4
423
Tumor
0.4
965
Tumor
0.4
955
Tumor
0.4
1013
Tumor
0.4
213
Tumor
0.4
455
Tumor
0.3
647
Tumor
0.3
114
Normal
0.3
127
Tumor
0.3
187
Tumor
0.3
393
Tumor
0.3
477
Tumor
0.3
467
Tumor
0.3
851
Tumor
0.3
341
Tumor
0.3
1015
Tumor
0.3
697
Tumor
0.3
277
Tumor
0.3
137
Tumor
0.3
113
Tumor
0.3
311
Tumor
0.3
514
Normal
0.3
616
Normal
0.3
383
Tumor
0.3
915
Tumor
0.3
527
Tumor
0.3
343
Tumor
0.3
916
Normal
0.2
737
Tumor
0.2
126
Normal
0.2
474
Normal
0.2
1021
Tumor
0.2
468
Normal
0.2
963
Tumor
0.2
724
Normal
0.2
635
Tumor
0.2
331
Tumor
0.2
1031
Tumor
0.2
483
Tumor
0.2
663
Tumor
0.2
361
Tumor
0.2
615
Tumor
0.2
777
Tumor
0.2
466
Normal
0.2
966
Normal
0.2
391
Tumor
0.2
362
Normal
0.2
212
Normal
0.2
515
Tumor
0.2
952
Normal
0.2
492
Normal
0.2
553
Tumor
0.2
128
Normal
0.2
285
Tumor
0.2
185
Tumor
0.2
431
Tumor
0.2
123
Tumor
0.2
727
Tumor
0.2
433
Tumor
0.2
283
Tumor
0.2
436
Normal
0.2
125
Tumor
0.2
217
Tumor
0.2
425
Tumor
0.2
728
Normal
0.2
451
Tumor
0.2
161
Tumor
0.2
745
Tumor
0.2
262
Normal
0.2
147
Tumor
0.2
284
Normal
0.2
111
Normal
0.2
424
Normal
0.2
494
Normal
0.2
231
Tumor
0.2
124
Normal
0.1
456
Normal
0.1
558
Normal
0.1
665
Tumor
0.1
375
Tumor
0.1
261
Tumor
0.1
464
Normal
0.1
376
Normal
0.1
976
Normal
0.1
426
Normal
0.1
414
Normal
0.1
814
Normal
0.1
278
Normal
0.1
195
Tumor
0.1
435
Tumor
0.1
714
Normal
0.1
863
Tumor
0.1
452
Normal
0.1
883
Tumor
0.1
661
Tumor
0.1
571
Tumor
0.1
365
Tumor
0.1
564
Normal
0.1
944
Normal
0.1
978
Normal
0.1
545
Tumor
0.1
422
Normal
0.1
188
Normal
0.1
312
Normal
0.1
951
Tumor
0.1
926
Normal
0.1
568
Normal
0.1
721
Tumor
0.1
222
Normal
0.1
628
Normal
0.1
785
Tumor
0.1
817
Tumor
0.1
958
Normal
0.1
223
Tumor
0.1
523
Tumor
0.1
975
Tumor
0.1
434
Normal
0.1
713
Tumor
0.1
618
Normal
0.1
563
Tumor
0.1
428
Normal
0.1
617
Tumor
0.1
964
Normal
0.1
918
Normal
0.1
686
Normal
0.1
534
Normal
0.1
956
Normal
0.1
696
Normal
0.1
943
Tumor
0.1
924
Normal
0.1
716
Normal
0.1
258
Normal
0.1
518
Normal
0.1
416
Normal
0.1
141
Tumor
0.1
363
Tumor
0.1
461
Tumor
0.1
227
Tumor
0.1
232
Normal
0.1
738
Normal
0.1
481
Tumor
0.1
921
Tumor
0.1
743
Tumor
0.1
516
Normal
0.1
922
Normal
0.1
412
Normal
0.1
861
Tumor
0.1
358
Normal
0.1
813
Tumor
0.0
386
Normal
0.0
432
Normal
0.0
484
Normal
0.0
314
Normal
0.0
917
Tumor
0.0
228
Normal
0.0
272
Normal
0.0
525
Tumor
0.0
415
Tumor
0.0
1025
Tumor
0.0
1044
Normal
0.0
356
Normal
0.0
648
Normal
0.0
136
Normal
0.0
746
Normal
0.0
135
Tumor
0.0
297
Tumor
0.0
353
Tumor
0.0
196
Normal
0.0
852
Normal
0.0
298
Normal
0.0
447
Tumor
0.0
396
Normal
0.0
1022
Normal
0.0
368
Normal
0.0
878
Normal
0.0
914
Normal
0.0
472
Normal
0.0
387
Tumor
0.0
537
Tumor
0.0
364
Normal
0.0
471
Tumor
0.0
446
Normal
0.0
873
Tumor
0.0
214
Normal
0.0
554
Normal
0.0
1043
Tumor
0.0
864
Normal
0.0
546
Normal
0.0
1045
Tumor
0.0
862
Normal
0.0
224
Normal
0.0
162
Normal
0.0
478
Normal
0.0
874
Normal
0.0
268
Normal
0.0
172
Normal
0.0
148
Normal
0.0
421
Tumor
0.0
271
Tumor
0.0
722
Normal
0.0
132
Normal
0.0
938
Normal
0.0
574
Normal
0.0
392
Normal
0.0
257
Tumor
0.0
968
Normal
0.0
388
Normal
0.0
332
Normal
0.0
818
Normal
0.0
662
Normal
0.0
636
Normal
0.0
715
Tumor
0.0
286
Normal
0.0
528
Normal
0.0
967
Tumor
0.0
572
Normal
0.0
858
Normal
0.0
756
Normal
0.0
526
Normal
0.0
1028
Normal
0.0
138
Normal
0.0
983
Tumor
0.0
698
Normal
-0.1
642
Normal
-0.1
1016
Normal
-0.1
786
Normal
-0.1
218
Normal
-0.1
354
Normal
-0.1
1032
Normal
-0.1
524
Normal
-0.1
384
Normal
-0.1
191
Tumor
-0.1
344
Normal
-0.1
142
Normal
-0.1
482
Normal
-0.1
536
Normal
-0.1
666
Normal
-0.1
557
Tumor
-0.1
327
Tumor
-0.1
1046
Normal
-0.1
816
Normal
-0.1
866
Normal
-0.1
221
Tumor
-0.1
954
Normal
-0.1
462
Normal
-0.1
351
Tumor
-0.1
723
Tumor
-0.1
1042
Normal
-0.1
538
Normal
-0.1
444
Normal
-0.1
366
Normal
-0.1
1026
Normal
-0.1
672
Normal
-0.1
443
Tumor
-0.1
463
Tumor
-0.1
867
Tumor
-0.1
513
Tumor
-0.1
664
Normal
-0.1
823
Tumor
-0.1
145
Tumor
-0.1
857
Tumor
-0.1
342
Normal
-0.1
573
Tumor
-0.1
192
Normal
-0.1
487
Tumor
-0.1
498
Normal
-0.1
488
Normal
-0.1
448
Normal
-0.1
925
Tumor
-0.1
744
Normal
-0.1
186
Normal
-0.1
517
Tumor
-0.1
824
Normal
-0.1
981
Tumor
-0.1
146
Normal
-0.2
982
Normal
-0.2
882
Normal
-0.2
881
Tumor
-0.2
865
Tumor
-0.2
352
Normal
-0.2
394
Normal
-0.2
1041
Tumor
-0.2
778
Normal
-0.2
627
Tumor
-0.2
328
Normal
-0.2
567
Tumor
-0.2
535
Tumor
-0.2
385
Tumor
-0.2
868
Normal
-0.2
1014
Normal
-0.2
427
Tumor
-0.2
742
Normal
-0.2
984
Normal
-0.2
395
Tumor
-0.3
913
Tumor
-0.3
884
Normal
-0.3
912
Normal
-0.3
641
Tumor
-0.3
685
Tumor
-0.3
741
Tumor
-0.3
671
Tumor
-0.4
491
Tumor
-0.4
911
Tumor
-0.5
267
Tumor
-0.7
877
Tumor
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
