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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPS28 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
156.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
629.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
612.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
529.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
432.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
426.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
399.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
358.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
350.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
348.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
345.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
336.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
333.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
327.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
324.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
321.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
315.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
308.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
304.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
302.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
297.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
295.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
292.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
292.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
286.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
276.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
275.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
274.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
274.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
273.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
270.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
269.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
263.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
258.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
257.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
255.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
253.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
253.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
253.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
253.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
252.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
246.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
245.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
244.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
242.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
241.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
240.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
239.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
237.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
235.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
233.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
233.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
232.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
231.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
230.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
229.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
229.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
228.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
226.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
225.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
222.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
221.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
217.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
217.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
217.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
215.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
213.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
211.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
211.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
210.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
209.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
204.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
203.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
203.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
200.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
198.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
198.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
197.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
197.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
197.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
194.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
194.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
194.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
194.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
193.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
192.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
192.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
191.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
186.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
185.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
185.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
184.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
182.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
182.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
182.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
180.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
180.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
178.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
178.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
177.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
177.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
175.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
173.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
172.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
172.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
171.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
171.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
170.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
170.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
170.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
169.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
168.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
168.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
167.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
166.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
166.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
166.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
166.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
165.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
164.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
163.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
163.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
163.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
162.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
162.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
162.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
161.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
161.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
161.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
160.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
159.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
159.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
158.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
158.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
157.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
157.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
157.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
156.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
156.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
156.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
155.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
155.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
154.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
154.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
154.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
153.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
153.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
152.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
151.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
151.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
151.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
151.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
151.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
150.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
150.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
149.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
149.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
149.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
149.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
148.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
147.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
147.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
147.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
147.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
146.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
146.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
145.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
144.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
144.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
143.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
143.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
143.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
142.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
142.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
141.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
141.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
141.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
141.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
140.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
139.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
138.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
138.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
138.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
138.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
137.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
137.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
136.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
136.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
136.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
136.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
135.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
135.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
134.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
134.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
134.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
133.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
133.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
133.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
133.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
132.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
132.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
131.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
130.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
130.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
129.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
128.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
128.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
128.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
128.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
128.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
127.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
127.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
127.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
127.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
126.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
126.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
126.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
125.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
124.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
124.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
123.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
122.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
122.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
122.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
121.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
121.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
121.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
121.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
120.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
120.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
120.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
120.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
120.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
119.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
117.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
117.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
116.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
116.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
116.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
116.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
116.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
115.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
115.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
115.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
115.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
114.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
114.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
113.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
112.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
112.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
112.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
112.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
112.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
111.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
111.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
111.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
111.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
111.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
110.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
110.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
110.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
109.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
109.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
109.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
109.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
108.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
108.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
107.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
105.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
105.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
104.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
104.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
103.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
103.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
103.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
103.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
103.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
102.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
102.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
102.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
101.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
101.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
101.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
101.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
101.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
100.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
100.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
100.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
100.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
100.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
99.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
98.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
98.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
97.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
96.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
96.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
95.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
93.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
92.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
92.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
92.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
92.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
91.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
91.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
90.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
89.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
89.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
89.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
89.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
88.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
87.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
87.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
87.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
87.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
86.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
86.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
85.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
85.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
84.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
84.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
84.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
83.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
82.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
82.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
82.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
81.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
80.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
79.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
79.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
78.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
78.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
77.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
75.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
74.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
73.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
72.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
72.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
72.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
71.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
71.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
70.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
69.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
68.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
67.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
66.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
63.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
63.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
62.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
61.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
61.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
60.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
58.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
58.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
55.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
52.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
52.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
50.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
50.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
49.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
46.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
42.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
40.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPS28 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
755.0
Number of samples
231
Samples
Sample
Description
TPM
DO50814
0 years, male, NA, stage:3, alive, 420 days
5018.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
3699.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2489.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
1966.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
1966.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
1874.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
1764.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
1734.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
1630.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
1583.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
1583.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
1528.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
1514.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
1484.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
1437.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1430.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
1415.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
1403.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
1398.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
1359.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
1357.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
1353.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
1350.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
1323.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1290.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1281.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
1260.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
1258.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
1234.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1222.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
1221.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
1216.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
1194.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1161.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
1141.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
1115.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
1113.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
1113.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
1110.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
1107.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
1106.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1094.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
1090.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
1066.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
1056.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
1040.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
1038.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1035.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
1017.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
997.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
989.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
986.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
981.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
979.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
974.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
971.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
949.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
940.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
939.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
935.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
928.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
923.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
908.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
892.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
884.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
880.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
867.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
865.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
864.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
853.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
849.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
848.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
844.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
834.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
830.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
827.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
825.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
788.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
786.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
786.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
784.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
772.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
767.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
760.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
757.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
756.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
750.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
748.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
738.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
738.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
727.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
725.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
724.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
722.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
720.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
718.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
710.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
708.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
705.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
705.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
701.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
698.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
695.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
691.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
688.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
688.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
679.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
669.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
667.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
667.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
662.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
658.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
653.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
645.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
644.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
639.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
637.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
627.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
623.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
611.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
611.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
608.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
606.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
592.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
591.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
586.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
581.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
579.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
575.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
573.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
570.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
567.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
565.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
563.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
554.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
551.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
550.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
547.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
545.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
544.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
538.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
537.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
536.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
528.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
526.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
525.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
525.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
523.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
522.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
512.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
498.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
495.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
488.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
483.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
480.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
479.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
478.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
473.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
473.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
470.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
467.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
465.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
460.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
459.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
459.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
457.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
453.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
452.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
451.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
451.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
439.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
438.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
429.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
429.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
428.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
427.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
427.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
425.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
415.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
415.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
414.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
411.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
406.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
402.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
397.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
396.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
394.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
390.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
389.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
385.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
380.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
372.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
368.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
367.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
356.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
356.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
348.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
348.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
345.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
345.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
343.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
341.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
336.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
334.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
332.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
328.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
326.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
325.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
325.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
320.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
312.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
307.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
292.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
283.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
275.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
273.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
272.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
269.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
268.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
264.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
251.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
249.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
236.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
235.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
234.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
234.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
217.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
173.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
156.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
154.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
153.8
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LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
393
Tumor
0.4
113
Tumor
0.4
267
Tumor
0.4
367
Tumor
0.4
557
Tumor
0.3
327
Tumor
0.3
353
Tumor
0.3
128
Normal
0.3
131
Tumor
0.3
537
Tumor
0.3
965
Tumor
0.3
467
Tumor
0.2
452
Normal
0.2
523
Tumor
0.2
331
Tumor
0.2
1021
Tumor
0.2
277
Tumor
0.2
285
Tumor
0.2
1016
Normal
0.2
358
Normal
0.2
432
Normal
0.2
937
Tumor
0.2
114
Normal
0.2
355
Tumor
0.2
567
Tumor
0.2
727
Tumor
0.2
195
Tumor
0.2
1025
Tumor
0.2
413
Tumor
0.2
387
Tumor
0.2
451
Tumor
0.2
984
Normal
0.2
436
Normal
0.2
918
Normal
0.2
445
Tumor
0.2
443
Tumor
0.2
365
Tumor
0.2
698
Normal
0.2
431
Tumor
0.2
728
Normal
0.2
446
Normal
0.2
982
Normal
0.2
375
Tumor
0.2
344
Normal
0.2
112
Tumor
0.2
473
Tumor
0.2
135
Tumor
0.1
462
Normal
0.1
111
Normal
0.1
342
Normal
0.1
332
Normal
0.1
257
Tumor
0.1
955
Tumor
0.1
527
Tumor
0.1
376
Normal
0.1
223
Tumor
0.1
227
Tumor
0.1
196
Normal
0.1
224
Normal
0.1
357
Tumor
0.1
283
Tumor
0.1
1042
Normal
0.1
517
Tumor
0.1
466
Normal
0.1
661
Tumor
0.1
518
Normal
0.1
524
Normal
0.1
124
Normal
0.1
568
Normal
0.1
222
Normal
0.1
385
Tumor
0.1
434
Normal
0.1
967
Tumor
0.1
715
Tumor
0.1
286
Normal
0.1
228
Normal
0.1
136
Normal
0.1
514
Normal
0.1
212
Normal
0.1
864
Normal
0.1
913
Tumor
0.1
427
Tumor
0.1
912
Normal
0.1
481
Tumor
0.1
278
Normal
0.1
435
Tumor
0.1
411
Tumor
0.1
964
Normal
0.1
271
Tumor
0.1
351
Tumor
0.1
366
Normal
0.1
433
Tumor
0.1
232
Normal
0.1
497
Tumor
0.1
368
Normal
0.1
415
Tumor
0.1
696
Normal
0.1
218
Normal
0.1
392
Normal
0.1
545
Tumor
0.1
951
Tumor
0.1
952
Normal
0.1
648
Normal
0.1
978
Normal
0.1
214
Normal
0.1
724
Normal
0.1
884
Normal
0.1
298
Normal
0.1
428
Normal
0.1
672
Normal
0.1
513
Tumor
0.1
558
Normal
0.1
421
Tumor
0.1
484
Normal
0.1
957
Tumor
0.1
258
Normal
0.1
186
Normal
0.1
493
Tumor
0.0
423
Tumor
0.0
737
Tumor
0.0
213
Tumor
0.0
966
Normal
0.0
554
Normal
0.0
528
Normal
0.0
923
Tumor
0.0
546
Normal
0.0
341
Tumor
0.0
617
Tumor
0.0
944
Normal
0.0
231
Tumor
0.0
472
Normal
0.0
981
Tumor
0.0
1014
Normal
0.0
221
Tumor
0.0
463
Tumor
0.0
882
Normal
0.0
723
Tumor
0.0
142
Normal
0.0
564
Normal
0.0
488
Normal
0.0
492
Normal
0.0
391
Tumor
0.0
862
Normal
0.0
187
Tumor
0.0
482
Normal
0.0
1044
Normal
0.0
525
Tumor
0.0
526
Normal
0.0
868
Normal
0.0
534
Normal
0.0
553
Tumor
0.0
685
Tumor
0.0
272
Normal
0.0
968
Normal
0.0
188
Normal
0.0
1028
Normal
0.0
858
Normal
0.0
878
Normal
0.0
516
Normal
0.0
396
Normal
0.0
412
Normal
0.0
425
Tumor
0.0
132
Normal
0.0
262
Normal
0.0
483
Tumor
0.0
137
Tumor
0.0
1032
Normal
0.0
778
Normal
0.0
914
Normal
0.0
361
Tumor
0.0
343
Tumor
0.0
662
Normal
0.0
471
Tumor
0.0
921
Tumor
0.0
628
Normal
0.0
883
Tumor
0.0
464
Normal
0.0
395
Tumor
0.0
636
Normal
0.0
185
Tumor
0.0
1031
Tumor
0.0
147
Tumor
0.0
386
Normal
0.0
171
Tumor
0.0
975
Tumor
0.0
572
Normal
0.0
618
Normal
0.0
515
Tumor
0.0
261
Tumor
0.0
465
Tumor
0.0
922
Normal
0.0
777
Tumor
0.0
474
Normal
0.0
738
Normal
0.0
352
Normal
0.0
743
Tumor
0.0
574
Normal
0.0
915
Tumor
0.0
866
Normal
0.0
642
Normal
0.0
953
Tumor
0.0
926
Normal
-0.1
356
Normal
-0.1
162
Normal
-0.1
217
Tumor
-0.1
695
Tumor
-0.1
125
Tumor
-0.1
851
Tumor
-0.1
138
Normal
-0.1
362
Normal
-0.1
817
Tumor
-0.1
477
Tumor
-0.1
755
Tumor
-0.1
958
Normal
-0.1
1046
Normal
-0.1
1013
Tumor
-0.1
664
Normal
-0.1
313
Tumor
-0.1
861
Tumor
-0.1
983
Tumor
-0.1
1026
Normal
-0.1
943
Tumor
-0.1
686
Normal
-0.1
424
Normal
-0.1
865
Tumor
-0.1
533
Tumor
-0.1
666
Normal
-0.1
123
Tumor
-0.1
211
Tumor
-0.1
697
Tumor
-0.1
363
Tumor
-0.1
536
Normal
-0.1
364
Normal
-0.1
284
Normal
-0.1
383
Tumor
-0.1
956
Normal
-0.1
456
Normal
-0.1
881
Tumor
-0.1
141
Tumor
-0.1
616
Normal
-0.1
191
Tumor
-0.1
414
Normal
-0.1
416
Normal
-0.1
126
Normal
-0.1
172
Normal
-0.1
786
Normal
-0.1
426
Normal
-0.1
494
Normal
-0.1
573
Tumor
-0.1
538
Normal
-0.1
297
Tumor
-0.1
127
Tumor
-0.1
744
Normal
-0.1
938
Normal
-0.1
455
Tumor
-0.1
394
Normal
-0.1
354
Normal
-0.1
498
Normal
-0.1
461
Tumor
-0.1
924
Normal
-0.1
963
Tumor
-0.1
1043
Tumor
-0.1
314
Normal
-0.1
824
Normal
-0.1
785
Tumor
-0.1
742
Normal
-0.1
1015
Tumor
-0.1
328
Normal
-0.1
478
Normal
-0.1
448
Normal
-0.1
722
Normal
-0.1
635
Tumor
-0.1
422
Normal
-0.1
756
Normal
-0.1
852
Normal
-0.2
563
Tumor
-0.2
145
Tumor
-0.2
468
Normal
-0.2
627
Tumor
-0.2
148
Normal
-0.2
823
Tumor
-0.2
925
Tumor
-0.2
1027
Tumor
-0.2
874
Normal
-0.2
388
Normal
-0.2
487
Tumor
-0.2
663
Tumor
-0.2
268
Normal
-0.2
312
Normal
-0.2
814
Normal
-0.2
615
Tumor
-0.2
192
Normal
-0.2
976
Normal
-0.2
954
Normal
-0.2
444
Normal
-0.2
916
Normal
-0.2
873
Tumor
-0.2
977
Tumor
-0.2
714
Normal
-0.2
857
Tumor
-0.2
146
Normal
-0.2
535
Tumor
-0.2
571
Tumor
-0.2
745
Tumor
-0.2
911
Tumor
-0.2
671
Tumor
-0.2
1045
Tumor
-0.3
447
Tumor
-0.3
815
Tumor
-0.3
816
Normal
-0.3
647
Tumor
-0.3
1022
Normal
-0.3
746
Normal
-0.3
716
Normal
-0.3
161
Tumor
-0.3
917
Tumor
-0.3
813
Tumor
-0.3
384
Normal
-0.3
1041
Tumor
-0.3
665
Tumor
-0.3
641
Tumor
-0.4
863
Tumor
-0.4
721
Tumor
-0.4
818
Normal
-0.4
741
Tumor
-0.4
867
Tumor
-0.4
877
Tumor
-0.4
713
Tumor
-0.4
311
Tumor
-0.4
491
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.