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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACBD6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
79.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
77.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
70.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
70.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
69.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
69.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
58.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
57.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
56.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
55.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
55.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
51.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
50.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
49.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
49.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
48.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
46.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
46.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
46.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
46.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
45.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
45.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
45.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
45.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
43.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
43.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
42.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
42.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
42.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
42.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
40.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
39.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
39.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
37.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
37.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
37.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
37.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
36.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
36.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
36.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
36.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
35.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
35.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
35.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
35.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
34.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
34.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
33.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
33.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
33.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
33.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
33.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
33.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
33.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
32.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
32.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
32.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
32.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
32.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
32.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
32.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
32.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
32.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
31.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
31.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
31.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
31.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
31.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
31.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
30.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
30.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
30.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
29.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
29.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
29.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
29.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
29.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
29.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
29.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
28.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
28.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
28.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
28.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
27.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
27.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
27.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
27.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
27.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
27.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
27.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
26.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
26.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
26.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
26.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
26.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
26.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
26.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
26.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
26.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
25.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
25.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
25.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
25.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
24.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
24.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
24.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
24.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
24.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
24.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
24.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
24.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
23.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
23.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
23.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
23.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
22.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
22.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
22.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
22.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
22.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
21.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
21.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
21.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
21.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
20.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
20.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
19.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
19.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
19.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
19.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
19.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
19.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
19.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
18.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
18.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
18.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
17.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
17.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
17.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
17.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
16.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACBD6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.6
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
44.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
36.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
33.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
30.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
29.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
28.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
25.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
25.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
24.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
24.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
23.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
23.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
22.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
22.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
21.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
21.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
19.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
19.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
19.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
18.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
15.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.9
881
Tumor
1.2
957
Tumor
1.1
953
Tumor
1.0
131
Tumor
0.9
483
Tumor
0.9
533
Tumor
0.9
741
Tumor
0.9
357
Tumor
0.9
865
Tumor
0.8
393
Tumor
0.8
355
Tumor
0.8
411
Tumor
0.8
125
Tumor
0.8
977
Tumor
0.7
861
Tumor
0.7
431
Tumor
0.7
963
Tumor
0.7
915
Tumor
0.7
923
Tumor
0.6
491
Tumor
0.6
313
Tumor
0.6
527
Tumor
0.6
147
Tumor
0.6
445
Tumor
0.6
171
Tumor
0.6
571
Tumor
0.6
647
Tumor
0.6
523
Tumor
0.5
123
Tumor
0.5
883
Tumor
0.5
161
Tumor
0.5
745
Tumor
0.5
493
Tumor
0.5
1031
Tumor
0.5
663
Tumor
0.5
271
Tumor
0.5
1021
Tumor
0.5
455
Tumor
0.5
975
Tumor
0.4
695
Tumor
0.4
277
Tumor
0.4
435
Tumor
0.4
724
Normal
0.4
211
Tumor
0.4
465
Tumor
0.4
351
Tumor
0.4
361
Tumor
0.4
867
Tumor
0.4
231
Tumor
0.4
221
Tumor
0.4
487
Tumor
0.4
525
Tumor
0.4
715
Tumor
0.4
943
Tumor
0.4
921
Tumor
0.4
192
Normal
0.3
124
Normal
0.3
471
Tumor
0.3
981
Tumor
0.3
537
Tumor
0.3
925
Tumor
0.3
473
Tumor
0.3
965
Tumor
0.3
567
Tumor
0.3
375
Tumor
0.3
257
Tumor
0.3
415
Tumor
0.3
573
Tumor
0.2
557
Tumor
0.2
112
Tumor
0.2
217
Tumor
0.2
447
Tumor
0.2
443
Tumor
0.2
267
Tumor
0.2
545
Tumor
0.2
698
Normal
0.2
213
Tumor
0.2
227
Tumor
0.2
283
Tumor
0.2
114
Normal
0.2
983
Tumor
0.2
368
Normal
0.1
451
Tumor
0.1
873
Tumor
0.1
517
Tumor
0.1
285
Tumor
0.1
185
Tumor
0.1
383
Tumor
0.1
917
Tumor
0.1
857
Tumor
0.1
135
Tumor
0.1
126
Normal
0.1
1041
Tumor
0.1
538
Normal
0.1
777
Tumor
0.1
1015
Tumor
0.1
553
Tumor
0.1
817
Tumor
0.1
497
Tumor
0.1
636
Normal
0.1
127
Tumor
0.1
463
Tumor
0.1
311
Tumor
0.1
515
Tumor
0.1
425
Tumor
0.1
128
Normal
0.1
813
Tumor
0.1
877
Tumor
0.1
232
Normal
0.1
137
Tumor
0.1
635
Tumor
0.1
343
Tumor
0.0
851
Tumor
0.0
498
Normal
0.0
823
Tumor
0.0
195
Tumor
0.0
648
Normal
0.0
665
Tumor
0.0
376
Normal
0.0
332
Normal
0.0
662
Normal
0.0
785
Tumor
0.0
666
Normal
0.0
344
Normal
0.0
818
Normal
0.0
616
Normal
0.0
111
Normal
0.0
951
Tumor
0.0
664
Normal
0.0
191
Tumor
0.0
258
Normal
0.0
384
Normal
0.0
365
Tumor
0.0
814
Normal
0.0
697
Tumor
0.0
297
Tumor
0.0
268
Normal
0.0
627
Tumor
0.0
113
Tumor
0.0
196
Normal
0.0
672
Normal
0.0
615
Tumor
0.0
141
Tumor
0.0
492
Normal
0.0
331
Tumor
-0.1
218
Normal
-0.1
755
Tumor
-0.1
737
Tumor
-0.1
1042
Normal
-0.1
1027
Tumor
-0.1
262
Normal
-0.1
362
Normal
-0.1
911
Tumor
-0.1
444
Normal
-0.1
222
Normal
-0.1
641
Tumor
-0.1
721
Tumor
-0.1
536
Normal
-0.1
964
Normal
-0.1
461
Tumor
-0.1
913
Tumor
-0.1
312
Normal
-0.1
628
Normal
-0.1
428
Normal
-0.1
145
Tumor
-0.1
944
Normal
-0.1
436
Normal
-0.1
467
Tumor
-0.1
363
Tumor
-0.1
716
Normal
-0.1
982
Normal
-0.1
744
Normal
-0.1
882
Normal
-0.1
446
Normal
-0.1
434
Normal
-0.1
568
Normal
-0.1
358
Normal
-0.1
954
Normal
-0.1
984
Normal
-0.1
685
Tumor
-0.1
433
Tumor
-0.2
261
Tumor
-0.2
642
Normal
-0.2
352
Normal
-0.2
618
Normal
-0.2
671
Tumor
-0.2
298
Normal
-0.2
488
Normal
-0.2
272
Normal
-0.2
1043
Tumor
-0.2
421
Tumor
-0.2
914
Normal
-0.2
924
Normal
-0.2
1044
Normal
-0.2
1025
Tumor
-0.2
132
Normal
-0.2
353
Tumor
-0.2
494
Normal
-0.2
546
Normal
-0.2
214
Normal
-0.2
1016
Normal
-0.2
1046
Normal
-0.2
342
Normal
-0.2
746
Normal
-0.2
966
Normal
-0.2
815
Tumor
-0.2
366
Normal
-0.2
884
Normal
-0.2
477
Tumor
-0.2
146
Normal
-0.2
878
Normal
-0.2
778
Normal
-0.2
696
Normal
-0.2
142
Normal
-0.2
978
Normal
-0.2
223
Tumor
-0.2
743
Tumor
-0.2
516
Normal
-0.2
456
Normal
-0.2
414
Normal
-0.2
738
Normal
-0.2
354
Normal
-0.2
952
Normal
-0.2
1014
Normal
-0.3
686
Normal
-0.3
138
Normal
-0.3
448
Normal
-0.3
432
Normal
-0.3
481
Tumor
-0.3
816
Normal
-0.3
395
Tumor
-0.3
136
Normal
-0.3
426
Normal
-0.3
564
Normal
-0.3
1032
Normal
-0.3
385
Tumor
-0.3
452
Normal
-0.3
278
Normal
-0.3
356
Normal
-0.3
864
Normal
-0.3
572
Normal
-0.3
742
Normal
-0.3
224
Normal
-0.3
1026
Normal
-0.3
464
Normal
-0.3
412
Normal
-0.3
554
Normal
-0.3
468
Normal
-0.3
926
Normal
-0.3
956
Normal
-0.3
863
Tumor
-0.3
514
Normal
-0.3
422
Normal
-0.3
976
Normal
-0.3
367
Tumor
-0.3
424
Normal
-0.3
558
Normal
-0.3
187
Tumor
-0.3
484
Normal
-0.3
1022
Normal
-0.3
341
Tumor
-0.3
228
Normal
-0.3
862
Normal
-0.3
364
Normal
-0.3
423
Tumor
-0.3
866
Normal
-0.3
466
Normal
-0.3
858
Normal
-0.3
427
Tumor
-0.3
534
Normal
-0.3
574
Normal
-0.3
563
Tumor
-0.3
212
Normal
-0.3
723
Tumor
-0.4
524
Normal
-0.4
416
Normal
-0.4
938
Normal
-0.4
472
Normal
-0.4
617
Tumor
-0.4
918
Normal
-0.4
728
Normal
-0.4
528
Normal
-0.4
916
Normal
-0.4
922
Normal
-0.4
387
Tumor
-0.4
526
Normal
-0.4
186
Normal
-0.4
937
Tumor
-0.4
713
Tumor
-0.4
912
Normal
-0.4
874
Normal
-0.4
314
Normal
-0.4
391
Tumor
-0.4
386
Normal
-0.4
1045
Tumor
-0.4
968
Normal
-0.4
513
Tumor
-0.4
967
Tumor
-0.4
852
Normal
-0.4
661
Tumor
-0.4
286
Normal
-0.4
284
Normal
-0.4
392
Normal
-0.5
413
Tumor
-0.5
868
Normal
-0.5
478
Normal
-0.5
172
Normal
-0.5
388
Normal
-0.5
722
Normal
-0.5
518
Normal
-0.5
394
Normal
-0.5
482
Normal
-0.5
396
Normal
-0.5
824
Normal
-0.5
327
Tumor
-0.5
474
Normal
-0.5
188
Normal
-0.5
1028
Normal
-0.5
727
Tumor
-0.5
462
Normal
-0.6
714
Normal
-0.6
535
Tumor
-0.6
756
Normal
-0.6
162
Normal
-0.6
328
Normal
-0.7
148
Normal
-0.7
786
Normal
-0.7
955
Tumor
-0.7
958
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
