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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WDR46 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
79.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
52.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
45.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
43.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
39.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
38.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
36.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
36.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
36.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
36.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
34.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
34.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
33.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
32.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
31.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
31.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
30.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
30.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
30.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
30.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
29.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
28.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
28.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
27.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
27.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
27.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
27.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
27.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
27.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
27.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
27.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
26.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
26.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
26.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
26.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
25.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
25.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
25.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
25.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
25.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
24.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
24.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
24.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
23.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
23.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
22.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
21.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
20.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
20.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
20.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
19.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
19.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
19.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
19.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
19.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
18.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
17.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
17.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
16.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
16.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
16.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
16.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
15.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WDR46 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.1
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
66.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
57.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
55.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
51.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
49.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
47.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
47.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
47.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
46.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
44.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
41.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
41.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
40.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
39.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
38.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
35.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
34.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
34.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
33.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
33.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
33.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
32.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
32.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
32.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
32.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
31.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
31.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
30.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
29.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
29.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
29.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
29.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
28.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
28.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
28.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
28.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
27.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
27.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
26.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
25.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
25.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
25.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
25.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
25.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
24.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
24.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
24.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
23.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
23.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
23.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
23.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
23.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
23.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
22.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
22.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
22.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
21.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
21.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
21.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
21.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
20.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
20.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
19.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
18.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
18.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
16.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
331
Tumor
1.2
951
Tumor
1.2
537
Tumor
1.1
671
Tumor
1.0
367
Tumor
1.0
965
Tumor
1.0
661
Tumor
0.9
817
Tumor
0.8
351
Tumor
0.8
227
Tumor
0.8
285
Tumor
0.8
967
Tumor
0.8
685
Tumor
0.7
567
Tumor
0.7
131
Tumor
0.7
517
Tumor
0.6
473
Tumor
0.6
471
Tumor
0.6
977
Tumor
0.6
743
Tumor
0.6
413
Tumor
0.6
171
Tumor
0.6
363
Tumor
0.5
665
Tumor
0.5
983
Tumor
0.5
1021
Tumor
0.5
497
Tumor
0.5
267
Tumor
0.5
427
Tumor
0.4
1041
Tumor
0.4
815
Tumor
0.4
1031
Tumor
0.4
385
Tumor
0.4
271
Tumor
0.4
877
Tumor
0.4
483
Tumor
0.4
557
Tumor
0.4
297
Tumor
0.4
113
Tumor
0.4
641
Tumor
0.4
913
Tumor
0.4
357
Tumor
0.4
127
Tumor
0.4
353
Tumor
0.4
1015
Tumor
0.3
387
Tumor
0.3
185
Tumor
0.3
112
Tumor
0.3
123
Tumor
0.3
395
Tumor
0.3
724
Normal
0.3
391
Tumor
0.3
423
Tumor
0.3
715
Tumor
0.3
1025
Tumor
0.3
545
Tumor
0.3
883
Tumor
0.3
925
Tumor
0.3
447
Tumor
0.3
873
Tumor
0.3
211
Tumor
0.3
615
Tumor
0.3
1013
Tumor
0.3
553
Tumor
0.3
513
Tumor
0.3
493
Tumor
0.3
343
Tumor
0.2
461
Tumor
0.2
957
Tumor
0.2
425
Tumor
0.2
533
Tumor
0.2
697
Tumor
0.2
525
Tumor
0.2
477
Tumor
0.2
943
Tumor
0.2
881
Tumor
0.2
975
Tumor
0.2
443
Tumor
0.2
1027
Tumor
0.2
963
Tumor
0.2
431
Tumor
0.2
445
Tumor
0.2
135
Tumor
0.2
635
Tumor
0.1
865
Tumor
0.1
814
Normal
0.1
361
Tumor
0.1
523
Tumor
0.1
231
Tumor
0.1
861
Tumor
0.1
327
Tumor
0.1
867
Tumor
0.1
355
Tumor
0.1
435
Tumor
0.1
383
Tumor
0.1
375
Tumor
0.1
823
Tumor
0.1
573
Tumor
0.1
341
Tumor
0.1
187
Tumor
0.1
1045
Tumor
0.1
663
Tumor
0.1
785
Tumor
0.1
574
Normal
0.1
515
Tumor
0.1
755
Tumor
0.1
421
Tumor
0.1
744
Normal
0.0
161
Tumor
0.0
462
Normal
0.0
851
Tumor
0.0
813
Tumor
0.0
863
Tumor
0.0
368
Normal
0.0
627
Tumor
0.0
727
Tumor
0.0
455
Tumor
0.0
911
Tumor
0.0
433
Tumor
0.0
568
Normal
0.0
482
Normal
0.0
467
Tumor
0.0
647
Tumor
0.0
125
Tumor
0.0
137
Tumor
0.0
564
Normal
0.0
358
Normal
0.0
384
Normal
0.0
465
Tumor
0.0
474
Normal
0.0
923
Tumor
0.0
221
Tumor
0.0
571
Tumor
0.0
376
Normal
0.0
777
Tumor
0.0
491
Tumor
0.0
213
Tumor
0.0
191
Tumor
-0.1
472
Normal
-0.1
342
Normal
-0.1
953
Tumor
-0.1
362
Normal
-0.1
365
Tumor
-0.1
411
Tumor
-0.1
147
Tumor
-0.1
148
Normal
-0.1
451
Tumor
-0.1
912
Normal
-0.1
536
Normal
-0.1
344
Normal
-0.1
921
Tumor
-0.1
527
Tumor
-0.1
737
Tumor
-0.1
415
Tumor
-0.1
535
Tumor
-0.1
283
Tumor
-0.1
722
Normal
-0.1
261
Tumor
-0.1
741
Tumor
-0.1
142
Normal
-0.1
354
Normal
-0.1
366
Normal
-0.1
223
Tumor
-0.1
563
Tumor
-0.1
1043
Tumor
-0.1
572
Normal
-0.1
257
Tumor
-0.1
352
Normal
-0.1
162
Normal
-0.1
857
Tumor
-0.1
446
Normal
-0.1
444
Normal
-0.1
745
Tumor
-0.1
917
Tumor
-0.1
311
Tumor
-0.1
524
Normal
-0.2
356
Normal
-0.2
738
Normal
-0.2
277
Tumor
-0.2
964
Normal
-0.2
128
Normal
-0.2
742
Normal
-0.2
617
Tumor
-0.2
448
Normal
-0.2
217
Tumor
-0.2
664
Normal
-0.2
111
Normal
-0.2
432
Normal
-0.2
858
Normal
-0.2
728
Normal
-0.2
937
Tumor
-0.2
314
Normal
-0.2
966
Normal
-0.2
313
Tumor
-0.2
1022
Normal
-0.2
436
Normal
-0.2
558
Normal
-0.2
1032
Normal
-0.2
723
Tumor
-0.2
186
Normal
-0.2
648
Normal
-0.2
488
Normal
-0.2
915
Tumor
-0.2
498
Normal
-0.2
958
Normal
-0.2
481
Tumor
-0.2
188
Normal
-0.2
672
Normal
-0.2
298
Normal
-0.2
1042
Normal
-0.2
172
Normal
-0.2
1028
Normal
-0.2
416
Normal
-0.2
145
Tumor
-0.2
278
Normal
-0.2
534
Normal
-0.2
968
Normal
-0.2
554
Normal
-0.2
332
Normal
-0.2
721
Tumor
-0.2
312
Normal
-0.2
518
Normal
-0.2
412
Normal
-0.2
452
Normal
-0.2
464
Normal
-0.2
124
Normal
-0.2
224
Normal
-0.3
824
Normal
-0.3
434
Normal
-0.3
141
Tumor
-0.3
756
Normal
-0.3
546
Normal
-0.3
424
Normal
-0.3
428
Normal
-0.3
1026
Normal
-0.3
192
Normal
-0.3
713
Tumor
-0.3
114
Normal
-0.3
1046
Normal
-0.3
478
Normal
-0.3
516
Normal
-0.3
466
Normal
-0.3
816
Normal
-0.3
222
Normal
-0.3
463
Tumor
-0.3
284
Normal
-0.3
852
Normal
-0.3
272
Normal
-0.3
456
Normal
-0.3
746
Normal
-0.3
616
Normal
-0.3
196
Normal
-0.3
786
Normal
-0.3
955
Tumor
-0.3
1014
Normal
-0.3
195
Tumor
-0.3
938
Normal
-0.3
414
Normal
-0.3
695
Tumor
-0.3
286
Normal
-0.3
228
Normal
-0.3
364
Normal
-0.3
232
Normal
-0.3
492
Normal
-0.3
126
Normal
-0.3
696
Normal
-0.3
666
Normal
-0.3
662
Normal
-0.3
818
Normal
-0.3
484
Normal
-0.3
487
Tumor
-0.3
976
Normal
-0.3
956
Normal
-0.3
954
Normal
-0.3
388
Normal
-0.3
944
Normal
-0.3
328
Normal
-0.3
494
Normal
-0.3
146
Normal
-0.3
132
Normal
-0.3
262
Normal
-0.3
468
Normal
-0.3
538
Normal
-0.3
218
Normal
-0.3
514
Normal
-0.3
698
Normal
-0.3
882
Normal
-0.4
686
Normal
-0.4
978
Normal
-0.4
926
Normal
-0.4
982
Normal
-0.4
394
Normal
-0.4
426
Normal
-0.4
138
Normal
-0.4
422
Normal
-0.4
214
Normal
-0.4
136
Normal
-0.4
878
Normal
-0.4
918
Normal
-0.4
528
Normal
-0.4
884
Normal
-0.4
258
Normal
-0.4
393
Tumor
-0.4
984
Normal
-0.4
714
Normal
-0.4
386
Normal
-0.4
628
Normal
-0.4
778
Normal
-0.4
924
Normal
-0.4
914
Normal
-0.4
392
Normal
-0.4
212
Normal
-0.4
268
Normal
-0.4
916
Normal
-0.4
396
Normal
-0.4
952
Normal
-0.4
642
Normal
-0.4
1016
Normal
-0.4
868
Normal
-0.4
922
Normal
-0.5
716
Normal
-0.5
636
Normal
-0.5
1044
Normal
-0.5
618
Normal
-0.5
526
Normal
-0.5
866
Normal
-0.5
981
Tumor
-0.5
874
Normal
-0.5
862
Normal
-0.5
864
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
