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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM185B is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
23.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
9.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
6.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
5.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
3.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
2.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM185B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.1
Number of samples
231
Samples
Sample
Description
TPM
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
4.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
2.0
343
Tumor
1.5
131
Tumor
1.5
958
Normal
1.5
385
Tumor
1.5
1025
Tumor
1.3
227
Tumor
1.3
976
Normal
1.3
545
Tumor
1.2
517
Tumor
1.1
685
Tumor
1.1
125
Tumor
1.0
573
Tumor
1.0
964
Normal
1.0
671
Tumor
1.0
537
Tumor
0.9
966
Normal
0.9
498
Normal
0.9
425
Tumor
0.9
641
Tumor
0.8
135
Tumor
0.8
968
Normal
0.8
533
Tumor
0.7
527
Tumor
0.7
523
Tumor
0.7
471
Tumor
0.7
493
Tumor
0.7
124
Normal
0.7
428
Normal
0.7
525
Tumor
0.6
111
Normal
0.6
423
Tumor
0.6
114
Normal
0.6
257
Tumor
0.6
391
Tumor
0.6
128
Normal
0.6
482
Normal
0.6
126
Normal
0.6
426
Normal
0.6
187
Tumor
0.6
553
Tumor
0.5
112
Tumor
0.5
331
Tumor
0.5
617
Tumor
0.5
363
Tumor
0.5
271
Tumor
0.5
422
Normal
0.5
863
Tumor
0.5
424
Normal
0.5
351
Tumor
0.5
483
Tumor
0.5
744
Normal
0.5
421
Tumor
0.5
427
Tumor
0.5
414
Normal
0.5
567
Tumor
0.5
852
Normal
0.5
1043
Tumor
0.4
713
Tumor
0.4
393
Tumor
0.4
413
Tumor
0.4
367
Tumor
0.4
497
Tumor
0.4
297
Tumor
0.4
123
Tumor
0.4
223
Tumor
0.4
283
Tumor
0.4
868
Normal
0.4
951
Tumor
0.4
455
Tumor
0.4
211
Tumor
0.3
571
Tumor
0.3
554
Normal
0.3
515
Tumor
0.3
715
Tumor
0.3
943
Tumor
0.3
1021
Tumor
0.3
353
Tumor
0.3
127
Tumor
0.3
1046
Normal
0.3
415
Tumor
0.3
285
Tumor
0.2
463
Tumor
0.2
563
Tumor
0.2
146
Normal
0.2
113
Tumor
0.2
481
Tumor
0.2
921
Tumor
0.2
388
Normal
0.2
866
Normal
0.2
387
Tumor
0.2
268
Normal
0.2
467
Tumor
0.2
538
Normal
0.2
978
Normal
0.2
862
Normal
0.2
355
Tumor
0.2
147
Tumor
0.1
341
Tumor
0.1
721
Tumor
0.1
745
Tumor
0.1
814
Normal
0.1
386
Normal
0.1
572
Normal
0.1
864
Normal
0.1
145
Tumor
0.1
874
Normal
0.1
1042
Normal
0.1
672
Normal
0.1
777
Tumor
0.1
955
Tumor
0.1
396
Normal
0.1
952
Normal
0.1
648
Normal
0.1
938
Normal
0.1
1044
Normal
0.1
1015
Tumor
0.1
953
Tumor
0.1
727
Tumor
0.1
977
Tumor
0.1
524
Normal
0.1
492
Normal
0.1
616
Normal
0.1
628
Normal
0.0
383
Tumor
0.0
742
Normal
0.0
738
Normal
0.0
813
Tumor
0.0
861
Tumor
0.0
618
Normal
0.0
666
Normal
0.0
954
Normal
0.0
447
Tumor
0.0
284
Normal
0.0
785
Tumor
0.0
635
Tumor
0.0
222
Normal
0.0
516
Normal
0.0
737
Tumor
0.0
392
Normal
0.0
944
Normal
0.0
956
Normal
0.0
642
Normal
0.0
557
Tumor
0.0
416
Normal
0.0
698
Normal
0.0
364
Normal
0.0
1031
Tumor
0.0
636
Normal
0.0
375
Tumor
0.0
357
Tumor
0.0
1022
Normal
0.0
983
Tumor
0.0
448
Normal
0.0
873
Tumor
0.0
395
Tumor
0.0
558
Normal
0.0
574
Normal
0.0
491
Tumor
0.0
984
Normal
0.0
472
Normal
0.0
723
Tumor
0.0
394
Normal
0.0
686
Normal
0.0
314
Normal
0.0
528
Normal
0.0
461
Tumor
0.0
536
Normal
0.0
728
Normal
-0.1
327
Tumor
-0.1
361
Tumor
-0.1
1014
Normal
-0.1
311
Tumor
-0.1
546
Normal
-0.1
221
Tumor
-0.1
161
Tumor
-0.1
664
Normal
-0.1
716
Normal
-0.1
462
Normal
-0.1
696
Normal
-0.1
816
Normal
-0.1
298
Normal
-0.1
697
Tumor
-0.1
662
Normal
-0.1
473
Tumor
-0.1
185
Tumor
-0.1
258
Normal
-0.1
484
Normal
-0.1
224
Normal
-0.1
724
Normal
-0.1
1045
Tumor
-0.1
352
Normal
-0.1
478
Normal
-0.1
615
Tumor
-0.1
1027
Tumor
-0.1
162
Normal
-0.1
212
Normal
-0.1
867
Tumor
-0.1
665
Tumor
-0.1
755
Tumor
-0.1
217
Tumor
-0.1
188
Normal
-0.1
535
Tumor
-0.1
1041
Tumor
-0.1
412
Normal
-0.1
368
Normal
-0.1
278
Normal
-0.1
137
Tumor
-0.1
937
Tumor
-0.2
384
Normal
-0.2
778
Normal
-0.2
142
Normal
-0.2
262
Normal
-0.2
824
Normal
-0.2
1032
Normal
-0.2
148
Normal
-0.2
534
Normal
-0.2
277
Tumor
-0.2
786
Normal
-0.2
328
Normal
-0.2
474
Normal
-0.2
356
Normal
-0.2
494
Normal
-0.2
312
Normal
-0.2
191
Tumor
-0.2
132
Normal
-0.2
261
Tumor
-0.2
695
Tumor
-0.2
518
Normal
-0.2
756
Normal
-0.2
722
Normal
-0.2
1026
Normal
-0.2
564
Normal
-0.2
741
Tumor
-0.2
136
Normal
-0.3
1028
Normal
-0.3
823
Tumor
-0.3
477
Tumor
-0.3
487
Tumor
-0.3
186
Normal
-0.3
138
Normal
-0.3
213
Tumor
-0.3
526
Normal
-0.3
354
Normal
-0.3
714
Normal
-0.3
358
Normal
-0.3
272
Normal
-0.3
313
Tumor
-0.3
488
Normal
-0.3
923
Tumor
-0.3
228
Normal
-0.3
982
Normal
-0.3
466
Normal
-0.3
627
Tumor
-0.3
411
Tumor
-0.3
344
Normal
-0.3
332
Normal
-0.3
172
Normal
-0.3
568
Normal
-0.3
1013
Tumor
-0.3
451
Tumor
-0.3
918
Normal
-0.3
661
Tumor
-0.3
865
Tumor
-0.3
196
Normal
-0.3
514
Normal
-0.4
464
Normal
-0.4
192
Normal
-0.4
218
Normal
-0.4
286
Normal
-0.4
171
Tumor
-0.4
663
Tumor
-0.4
362
Normal
-0.4
366
Normal
-0.4
456
Normal
-0.4
141
Tumor
-0.4
214
Normal
-0.4
647
Tumor
-0.4
231
Tumor
-0.4
1016
Normal
-0.4
746
Normal
-0.4
342
Normal
-0.4
915
Tumor
-0.4
376
Normal
-0.4
926
Normal
-0.4
917
Tumor
-0.4
267
Tumor
-0.4
452
Normal
-0.5
468
Normal
-0.5
195
Tumor
-0.5
232
Normal
-0.5
925
Tumor
-0.5
981
Tumor
-0.5
365
Tumor
-0.6
922
Normal
-0.7
924
Normal
-0.7
818
Normal
-0.7
513
Tumor
-0.8
916
Normal
-0.8
858
Normal
-0.9
465
Tumor
-1.0
817
Tumor
-1.0
857
Tumor
-1.0
975
Tumor
-1.3
815
Tumor
-1.3
851
Tumor
-1.4
963
Tumor
-1.4
957
Tumor
-1.9
967
Tumor
-2.2
965
Tumor
-2.2
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
877
Tumor
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
433
Tumor
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
