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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NOL7 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
69.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
57.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
56.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
55.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
55.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
54.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
53.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
52.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
50.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
47.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
47.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
46.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
46.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
46.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
46.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
45.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
45.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
45.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
45.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
44.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
44.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
43.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
43.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
43.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
43.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
43.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
43.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
43.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
42.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
42.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
42.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
42.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
41.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
41.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
40.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
40.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
40.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
40.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
40.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
40.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
39.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
39.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
39.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
39.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
39.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
38.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
38.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
38.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
38.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
37.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
37.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
37.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
37.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
37.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
36.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
36.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
36.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
36.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
35.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
35.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
35.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
35.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
34.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
34.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
34.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
33.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
33.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
33.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
33.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
33.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
33.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
33.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
33.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
33.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
32.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
32.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
32.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
32.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
32.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
32.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
32.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
31.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
31.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
31.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
31.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
31.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
31.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
31.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
31.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
30.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
30.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
30.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
30.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
30.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
30.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
30.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
30.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
30.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
30.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
30.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
30.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
30.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
30.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
30.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
30.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
30.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
29.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
29.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
29.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
29.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
29.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
29.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
28.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
28.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
28.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
28.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
28.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
28.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
28.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
28.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
28.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
28.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
28.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
28.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
27.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
27.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
27.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
27.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
27.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
27.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
27.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
27.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
26.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
26.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
26.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
26.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
26.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
26.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
26.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
26.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
26.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
26.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
26.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
26.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
25.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
25.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
25.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
25.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
25.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
25.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
25.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
25.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
25.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
25.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
25.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
25.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
25.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
24.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
24.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
24.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
24.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
24.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
24.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
24.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
24.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
24.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
24.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
23.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
23.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
23.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
23.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
23.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
23.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
23.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
23.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
22.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
22.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
22.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
22.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
22.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
22.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
22.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
22.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
22.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
22.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
22.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
22.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
22.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
21.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
21.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
21.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
21.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
21.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
21.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
20.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
20.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
20.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
20.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
20.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
20.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
19.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
19.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
19.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
19.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
19.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
19.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
19.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
19.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
18.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
18.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
18.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
18.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
18.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
18.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
17.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
17.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
17.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
17.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
16.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
16.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
15.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
15.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
15.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
13.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NOL7 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
48.4
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
238.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
147.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
146.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
112.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
106.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
104.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
103.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
100.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
100.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
99.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
94.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
93.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
93.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
91.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
90.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
88.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
87.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
87.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
87.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
85.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
85.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
84.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
81.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
78.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
78.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
76.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
75.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
74.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
72.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
72.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
71.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
71.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
71.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
70.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
70.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
69.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
68.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
68.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
68.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
68.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
68.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
68.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
67.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
66.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
65.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
65.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
65.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
64.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
63.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
62.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
61.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
59.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
59.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
58.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
58.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
58.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
57.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
57.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
56.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
55.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
55.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
55.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
54.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
53.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
53.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
53.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
53.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
53.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
53.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
53.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
53.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
51.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
51.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
51.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
51.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
51.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
50.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
50.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
50.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
49.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
49.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
49.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
49.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
49.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
48.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
48.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
48.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
48.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
47.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
46.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
46.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
46.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
46.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
46.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
46.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
46.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
46.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
45.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
45.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
45.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
45.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
45.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
45.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
45.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
45.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
45.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
44.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
44.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
43.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
43.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
43.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
43.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
43.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
43.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
42.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
42.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
42.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
42.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
42.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
42.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
42.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
42.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
42.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
41.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
40.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
40.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
40.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
40.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
40.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
40.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
40.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
39.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
39.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
39.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
39.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
39.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
38.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
38.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
38.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
38.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
38.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
37.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
37.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
37.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
37.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
37.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
37.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
37.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
37.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
37.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
36.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
36.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
36.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
36.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
36.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
36.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
36.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
36.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
35.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
35.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
34.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
34.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
34.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
33.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
33.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
33.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
33.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
33.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
33.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
32.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
32.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
32.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
32.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
32.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
32.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
31.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
31.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
31.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
31.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
31.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
30.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
30.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
30.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
30.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
30.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
29.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
29.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
29.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
29.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
28.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
28.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
28.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
28.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
28.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
28.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
27.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
27.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
27.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
26.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
26.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
26.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
25.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
25.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
25.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
25.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
25.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
25.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
24.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
24.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
24.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
23.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
22.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
22.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
20.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
20.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
17.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
16.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
351
Tumor
1.5
331
Tumor
1.4
951
Tumor
1.3
537
Tumor
1.2
473
Tumor
1.2
671
Tumor
1.2
965
Tumor
1.1
685
Tumor
1.1
743
Tumor
1.1
131
Tumor
1.0
817
Tumor
1.0
567
Tumor
1.0
977
Tumor
1.0
557
Tumor
1.0
517
Tumor
0.9
724
Normal
0.9
367
Tumor
0.9
967
Tumor
0.9
227
Tumor
0.9
497
Tumor
0.9
661
Tumor
0.9
471
Tumor
0.8
413
Tumor
0.8
983
Tumor
0.8
285
Tumor
0.8
635
Tumor
0.8
1031
Tumor
0.8
493
Tumor
0.7
385
Tumor
0.7
171
Tumor
0.7
535
Tumor
0.7
1021
Tumor
0.7
865
Tumor
0.7
211
Tumor
0.7
1025
Tumor
0.7
815
Tumor
0.7
883
Tumor
0.7
483
Tumor
0.7
877
Tumor
0.6
363
Tumor
0.6
447
Tumor
0.6
1041
Tumor
0.6
1013
Tumor
0.6
925
Tumor
0.6
123
Tumor
0.6
1015
Tumor
0.6
957
Tumor
0.6
715
Tumor
0.6
937
Tumor
0.6
395
Tumor
0.5
665
Tumor
0.5
573
Tumor
0.5
267
Tumor
0.5
913
Tumor
0.5
545
Tumor
0.5
861
Tumor
0.5
553
Tumor
0.5
221
Tumor
0.5
353
Tumor
0.5
641
Tumor
0.5
112
Tumor
0.5
425
Tumor
0.5
881
Tumor
0.4
571
Tumor
0.4
431
Tumor
0.4
355
Tumor
0.4
785
Tumor
0.4
873
Tumor
0.4
663
Tumor
0.4
127
Tumor
0.4
923
Tumor
0.4
963
Tumor
0.4
943
Tumor
0.4
467
Tumor
0.4
737
Tumor
0.4
523
Tumor
0.3
975
Tumor
0.3
135
Tumor
0.3
513
Tumor
0.3
427
Tumor
0.3
823
Tumor
0.3
487
Tumor
0.3
415
Tumor
0.3
271
Tumor
0.3
387
Tumor
0.3
297
Tumor
0.3
647
Tumor
0.3
477
Tumor
0.3
327
Tumor
0.3
617
Tumor
0.3
867
Tumor
0.2
187
Tumor
0.2
433
Tumor
0.2
357
Tumor
0.2
411
Tumor
0.2
525
Tumor
0.2
375
Tumor
0.2
113
Tumor
0.2
697
Tumor
0.2
741
Tumor
0.2
921
Tumor
0.2
615
Tumor
0.2
953
Tumor
0.2
1045
Tumor
0.2
231
Tumor
0.2
527
Tumor
0.2
851
Tumor
0.2
443
Tumor
0.2
533
Tumor
0.2
383
Tumor
0.2
455
Tumor
0.2
391
Tumor
0.2
814
Normal
0.1
536
Normal
0.1
755
Tumor
0.1
311
Tumor
0.1
911
Tumor
0.1
563
Tumor
0.1
423
Tumor
0.1
341
Tumor
0.1
461
Tumor
0.1
1027
Tumor
0.1
524
Normal
0.1
185
Tumor
0.1
223
Tumor
0.1
213
Tumor
0.1
745
Tumor
0.0
435
Tumor
0.0
283
Tumor
0.0
161
Tumor
0.0
857
Tumor
0.0
191
Tumor
0.0
491
Tumor
0.0
627
Tumor
0.0
343
Tumor
0.0
217
Tumor
0.0
445
Tumor
0.0
261
Tumor
0.0
727
Tumor
0.0
465
Tumor
0.0
313
Tumor
0.0
515
Tumor
0.0
777
Tumor
0.0
863
Tumor
0.0
912
Normal
0.0
884
Normal
0.0
421
Tumor
-0.1
813
Tumor
-0.1
984
Normal
-0.1
917
Tumor
-0.1
518
Normal
-0.1
954
Normal
-0.1
488
Normal
-0.1
955
Tumor
-0.1
492
Normal
-0.1
546
Normal
-0.1
976
Normal
-0.1
538
Normal
-0.1
354
Normal
-0.1
915
Tumor
-0.1
384
Normal
-0.1
361
Tumor
-0.1
393
Tumor
-0.2
966
Normal
-0.2
257
Tumor
-0.2
878
Normal
-0.2
474
Normal
-0.2
484
Normal
-0.2
494
Normal
-0.2
721
Tumor
-0.2
882
Normal
-0.2
1028
Normal
-0.2
412
Normal
-0.2
1014
Normal
-0.2
1043
Tumor
-0.2
498
Normal
-0.2
277
Tumor
-0.2
1044
Normal
-0.2
472
Normal
-0.2
824
Normal
-0.2
195
Tumor
-0.2
466
Normal
-0.2
448
Normal
-0.2
344
Normal
-0.2
451
Tumor
-0.2
852
Normal
-0.2
964
Normal
-0.2
968
Normal
-0.2
516
Normal
-0.2
922
Normal
-0.2
695
Tumor
-0.2
534
Normal
-0.3
664
Normal
-0.3
696
Normal
-0.3
463
Tumor
-0.3
228
Normal
-0.3
938
Normal
-0.3
481
Tumor
-0.3
478
Normal
-0.3
284
Normal
-0.3
1016
Normal
-0.3
554
Normal
-0.3
918
Normal
-0.3
672
Normal
-0.3
125
Tumor
-0.3
858
Normal
-0.3
352
Normal
-0.3
874
Normal
-0.3
698
Normal
-0.3
514
Normal
-0.3
944
Normal
-0.3
141
Tumor
-0.3
628
Normal
-0.3
558
Normal
-0.3
572
Normal
-0.3
286
Normal
-0.3
981
Tumor
-0.3
342
Normal
-0.3
1026
Normal
-0.3
1046
Normal
-0.3
714
Normal
-0.3
744
Normal
-0.3
462
Normal
-0.3
786
Normal
-0.3
916
Normal
-0.3
362
Normal
-0.3
137
Tumor
-0.3
376
Normal
-0.3
818
Normal
-0.3
1032
Normal
-0.3
356
Normal
-0.3
365
Tumor
-0.3
866
Normal
-0.3
723
Tumor
-0.3
958
Normal
-0.3
434
Normal
-0.3
396
Normal
-0.3
666
Normal
-0.3
756
Normal
-0.4
224
Normal
-0.4
982
Normal
-0.4
147
Tumor
-0.4
952
Normal
-0.4
1042
Normal
-0.4
298
Normal
-0.4
328
Normal
-0.4
716
Normal
-0.4
568
Normal
-0.4
426
Normal
-0.4
924
Normal
-0.4
456
Normal
-0.4
686
Normal
-0.4
436
Normal
-0.4
662
Normal
-0.4
956
Normal
-0.4
746
Normal
-0.4
424
Normal
-0.4
648
Normal
-0.4
358
Normal
-0.4
444
Normal
-0.4
145
Tumor
-0.4
526
Normal
-0.4
864
Normal
-0.4
926
Normal
-0.4
914
Normal
-0.4
446
Normal
-0.4
728
Normal
-0.4
816
Normal
-0.4
414
Normal
-0.4
738
Normal
-0.4
392
Normal
-0.4
364
Normal
-0.4
978
Normal
-0.4
192
Normal
-0.4
482
Normal
-0.4
564
Normal
-0.4
862
Normal
-0.4
722
Normal
-0.4
416
Normal
-0.4
528
Normal
-0.4
128
Normal
-0.5
636
Normal
-0.5
212
Normal
-0.5
574
Normal
-0.5
468
Normal
-0.5
1022
Normal
-0.5
368
Normal
-0.5
742
Normal
-0.5
142
Normal
-0.5
394
Normal
-0.5
258
Normal
-0.5
386
Normal
-0.5
428
Normal
-0.5
713
Tumor
-0.5
452
Normal
-0.5
232
Normal
-0.5
114
Normal
-0.5
262
Normal
-0.5
366
Normal
-0.5
778
Normal
-0.5
268
Normal
-0.5
868
Normal
-0.5
126
Normal
-0.5
188
Normal
-0.6
148
Normal
-0.6
111
Normal
-0.6
214
Normal
-0.6
222
Normal
-0.6
464
Normal
-0.6
388
Normal
-0.6
616
Normal
-0.6
312
Normal
-0.6
124
Normal
-0.6
422
Normal
-0.6
618
Normal
-0.6
272
Normal
-0.6
432
Normal
-0.6
172
Normal
-0.6
146
Normal
-0.7
278
Normal
-0.7
314
Normal
-0.7
642
Normal
-0.7
218
Normal
-0.7
162
Normal
-0.7
196
Normal
-0.7
132
Normal
-0.7
186
Normal
-0.7
138
Normal
-0.8
332
Normal
-0.8
136
Normal
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
