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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC26A6 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
44.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
42.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
31.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
29.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
29.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
26.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
25.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
25.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
25.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
24.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
21.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
21.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
20.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
20.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
18.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
18.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
17.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
17.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
7.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
5.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
5.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
4.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
4.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC26A6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.2
Number of samples
231
Samples
Sample
Description
TPM
DO23546
0 years, male, NA, stage:2, alive, 1050 days
89.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
80.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
60.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
50.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
44.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
39.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
38.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
35.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
34.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
34.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
33.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
31.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
31.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
31.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
27.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
27.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
25.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
25.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
25.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
25.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
24.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
23.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
23.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
22.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
22.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
21.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
20.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
20.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
19.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
18.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
17.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
865
Tumor
1.8
277
Tumor
1.7
957
Tumor
1.6
567
Tumor
1.5
363
Tumor
1.5
171
Tumor
1.4
477
Tumor
1.3
313
Tumor
1.3
365
Tumor
1.3
425
Tumor
1.2
483
Tumor
1.2
517
Tumor
1.2
883
Tumor
1.2
537
Tumor
1.2
391
Tumor
1.2
553
Tumor
1.2
1041
Tumor
1.2
1013
Tumor
1.1
525
Tumor
1.1
923
Tumor
1.1
227
Tumor
1.1
257
Tumor
1.1
435
Tumor
1.0
161
Tumor
1.0
473
Tumor
1.0
647
Tumor
0.9
513
Tumor
0.9
533
Tumor
0.9
341
Tumor
0.9
395
Tumor
0.9
471
Tumor
0.9
815
Tumor
0.8
745
Tumor
0.8
355
Tumor
0.8
221
Tumor
0.8
423
Tumor
0.8
877
Tumor
0.7
361
Tumor
0.7
937
Tumor
0.7
641
Tumor
0.7
967
Tumor
0.7
925
Tumor
0.7
387
Tumor
0.6
965
Tumor
0.6
463
Tumor
0.6
367
Tumor
0.6
427
Tumor
0.6
951
Tumor
0.6
1027
Tumor
0.6
953
Tumor
0.6
145
Tumor
0.6
231
Tumor
0.6
913
Tumor
0.5
777
Tumor
0.5
433
Tumor
0.5
491
Tumor
0.5
267
Tumor
0.5
571
Tumor
0.5
917
Tumor
0.5
977
Tumor
0.5
125
Tumor
0.5
695
Tumor
0.5
135
Tumor
0.5
357
Tumor
0.5
285
Tumor
0.5
127
Tumor
0.5
411
Tumor
0.5
343
Tumor
0.4
557
Tumor
0.4
1025
Tumor
0.4
685
Tumor
0.4
785
Tumor
0.4
523
Tumor
0.4
715
Tumor
0.4
421
Tumor
0.4
627
Tumor
0.4
353
Tumor
0.4
983
Tumor
0.3
414
Normal
0.3
921
Tumor
0.3
112
Tumor
0.3
426
Normal
0.3
465
Tumor
0.3
191
Tumor
0.3
663
Tumor
0.3
817
Tumor
0.3
331
Tumor
0.3
223
Tumor
0.3
451
Tumor
0.3
375
Tumor
0.3
963
Tumor
0.2
724
Normal
0.2
213
Tumor
0.2
851
Tumor
0.2
424
Normal
0.2
487
Tumor
0.2
413
Tumor
0.2
881
Tumor
0.2
698
Normal
0.1
187
Tumor
0.1
261
Tumor
0.1
527
Tumor
0.1
271
Tumor
0.1
461
Tumor
0.1
741
Tumor
0.1
975
Tumor
0.1
141
Tumor
0.1
1021
Tumor
0.1
467
Tumor
0.1
1031
Tumor
0.0
554
Normal
0.0
665
Tumor
0.0
873
Tumor
0.0
195
Tumor
0.0
563
Tumor
0.0
573
Tumor
0.0
422
Normal
0.0
428
Normal
0.0
497
Tumor
0.0
857
Tumor
0.0
863
Tumor
0.0
123
Tumor
0.0
385
Tumor
0.0
911
Tumor
0.0
1015
Tumor
-0.1
915
Tumor
-0.1
185
Tumor
-0.1
1045
Tumor
-0.1
393
Tumor
-0.1
147
Tumor
-0.1
515
Tumor
-0.1
697
Tumor
-0.1
217
Tumor
-0.1
861
Tumor
-0.1
172
Normal
-0.1
671
Tumor
-0.1
351
Tumor
-0.1
727
Tumor
-0.1
755
Tumor
-0.1
635
Tumor
-0.2
615
Tumor
-0.2
162
Normal
-0.2
148
Normal
-0.2
1042
Normal
-0.2
113
Tumor
-0.2
136
Normal
-0.2
448
Normal
-0.2
1043
Tumor
-0.2
188
Normal
-0.2
964
Normal
-0.2
131
Tumor
-0.2
111
Normal
-0.2
443
Tumor
-0.2
132
Normal
-0.2
383
Tumor
-0.3
138
Normal
-0.3
743
Tumor
-0.3
222
Normal
-0.3
137
Tumor
-0.3
464
Normal
-0.3
713
Tumor
-0.3
124
Normal
-0.3
823
Tumor
-0.3
1032
Normal
-0.3
342
Normal
-0.3
922
Normal
-0.3
466
Normal
-0.3
534
Normal
-0.3
617
Tumor
-0.3
328
Normal
-0.4
1028
Normal
-0.4
526
Normal
-0.4
514
Normal
-0.4
297
Tumor
-0.4
128
Normal
-0.4
186
Normal
-0.4
976
Normal
-0.4
686
Normal
-0.4
344
Normal
-0.4
356
Normal
-0.4
982
Normal
-0.4
868
Normal
-0.4
462
Normal
-0.4
327
Tumor
-0.4
737
Tumor
-0.4
518
Normal
-0.4
352
Normal
-0.4
376
Normal
-0.4
866
Normal
-0.4
867
Tumor
-0.4
211
Tumor
-0.4
568
Normal
-0.4
968
Normal
-0.4
493
Tumor
-0.4
286
Normal
-0.5
786
Normal
-0.5
984
Normal
-0.5
114
Normal
-0.5
538
Normal
-0.5
452
Normal
-0.5
142
Normal
-0.5
468
Normal
-0.5
978
Normal
-0.5
498
Normal
-0.5
528
Normal
-0.5
546
Normal
-0.5
721
Tumor
-0.5
224
Normal
-0.5
358
Normal
-0.5
228
Normal
-0.5
884
Normal
-0.5
416
Normal
-0.5
1044
Normal
-0.5
192
Normal
-0.5
456
Normal
-0.5
283
Tumor
-0.5
368
Normal
-0.5
354
Normal
-0.5
146
Normal
-0.5
536
Normal
-0.5
384
Normal
-0.5
1016
Normal
-0.5
311
Tumor
-0.5
258
Normal
-0.5
284
Normal
-0.5
516
Normal
-0.5
415
Tumor
-0.5
126
Normal
-0.5
214
Normal
-0.5
981
Tumor
-0.5
212
Normal
-0.5
431
Tumor
-0.5
574
Normal
-0.5
218
Normal
-0.5
388
Normal
-0.5
714
Normal
-0.5
1022
Normal
-0.6
958
Normal
-0.6
1014
Normal
-0.6
1046
Normal
-0.6
722
Normal
-0.6
362
Normal
-0.6
926
Normal
-0.6
918
Normal
-0.6
196
Normal
-0.6
914
Normal
-0.6
824
Normal
-0.6
618
Normal
-0.6
642
Normal
-0.6
366
Normal
-0.6
432
Normal
-0.6
954
Normal
-0.6
564
Normal
-0.6
394
Normal
-0.6
814
Normal
-0.6
455
Tumor
-0.6
858
Normal
-0.6
944
Normal
-0.6
716
Normal
-0.6
1026
Normal
-0.7
446
Normal
-0.7
396
Normal
-0.7
484
Normal
-0.7
262
Normal
-0.7
746
Normal
-0.7
813
Tumor
-0.7
492
Normal
-0.7
392
Normal
-0.7
874
Normal
-0.7
696
Normal
-0.7
436
Normal
-0.7
966
Normal
-0.7
864
Normal
-0.7
661
Tumor
-0.7
572
Normal
-0.7
956
Normal
-0.7
524
Normal
-0.7
778
Normal
-0.7
494
Normal
-0.7
545
Tumor
-0.7
312
Normal
-0.7
558
Normal
-0.8
268
Normal
-0.8
474
Normal
-0.8
616
Normal
-0.8
882
Normal
-0.8
648
Normal
-0.8
938
Normal
-0.8
232
Normal
-0.8
756
Normal
-0.8
364
Normal
-0.8
916
Normal
-0.8
662
Normal
-0.8
272
Normal
-0.8
488
Normal
-0.8
386
Normal
-0.8
535
Tumor
-0.8
434
Normal
-0.8
445
Tumor
-0.8
444
Normal
-0.8
742
Normal
-0.8
664
Normal
-0.8
862
Normal
-0.8
628
Normal
-0.8
412
Normal
-0.9
278
Normal
-0.9
943
Tumor
-0.9
723
Tumor
-0.9
852
Normal
-0.9
912
Normal
-0.9
924
Normal
-0.9
955
Tumor
-0.9
818
Normal
-0.9
472
Normal
-0.9
738
Normal
-1.0
952
Normal
-1.0
298
Normal
-1.0
728
Normal
-1.1
314
Normal
-1.1
447
Tumor
-1.1
666
Normal
-1.1
672
Normal
-1.1
878
Normal
-1.1
816
Normal
-1.2
478
Normal
-1.2
332
Normal
-1.3
482
Normal
-1.3
744
Normal
-1.4
636
Normal
-1.5
481
Tumor
-1.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
