We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MCRIP1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
39.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
154.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
152.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
132.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
129.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
126.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
125.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
122.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
113.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
110.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
110.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
107.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
104.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
102.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
101.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
100.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
99.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
98.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
98.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
98.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
95.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
94.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
89.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
86.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
85.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
82.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
82.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
80.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
80.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
79.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
79.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
76.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
76.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
74.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
72.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
72.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
71.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
70.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
69.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
68.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
68.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
67.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
66.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
64.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
64.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
63.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
62.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
62.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
62.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
61.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
61.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
61.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
61.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
60.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
60.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
59.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
59.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
59.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
59.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
59.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
58.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
58.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
58.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
58.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
58.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
57.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
57.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
57.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
57.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
56.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
56.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
55.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
54.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
54.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
54.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
53.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
51.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
50.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
50.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
49.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
49.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
49.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
48.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
48.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
48.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
48.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
47.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
47.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
47.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
47.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
47.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
46.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
46.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
46.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
46.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
45.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
45.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
45.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
45.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
45.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
44.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
44.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
44.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
44.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
44.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
43.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
43.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
43.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
43.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
43.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
43.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
42.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
42.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
42.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
42.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
42.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
42.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
41.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
41.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
41.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
41.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
40.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
40.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
40.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
40.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
40.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
39.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
39.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
39.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
39.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
39.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
39.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
38.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
38.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
38.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
38.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
38.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
38.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
38.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
38.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
37.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
37.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
37.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
37.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
37.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
37.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
37.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
37.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
37.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
37.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
36.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
36.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
36.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
36.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
35.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
35.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
35.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
35.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
35.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
35.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
35.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
35.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
35.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
34.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
34.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
34.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
34.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
34.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
34.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
34.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
34.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
33.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
33.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
33.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
33.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
33.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
32.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
32.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
32.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
31.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
31.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
31.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
31.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
31.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
31.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
31.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
31.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
31.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
31.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
31.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
31.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
31.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
31.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
31.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
31.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
30.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
30.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
30.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
30.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
30.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
30.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
30.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
30.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
29.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
29.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
29.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
29.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
29.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
29.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
29.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
29.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
29.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
29.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
28.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
28.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
28.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
28.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
28.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
28.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
28.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
28.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
27.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
27.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
27.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
27.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
27.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
26.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
26.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
26.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
26.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
26.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
26.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
26.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
25.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
25.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
25.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
25.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
25.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
25.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
25.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
25.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
25.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
25.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
24.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
24.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
24.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
24.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
24.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
24.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
24.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
24.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
24.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
24.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
23.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
23.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
23.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
23.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
23.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
23.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
23.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
22.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
22.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
22.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
22.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
22.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
22.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
21.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
21.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
21.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
21.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
21.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
21.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
21.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
20.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
20.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
20.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
20.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
19.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
19.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
19.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
19.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
19.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
19.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
17.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
14.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
14.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.4
473
Tumor
1.4
533
Tumor
1.4
641
Tumor
1.3
883
Tumor
1.2
435
Tumor
1.2
367
Tumor
1.1
695
Tumor
1.1
661
Tumor
1.1
815
Tumor
1.0
363
Tumor
0.9
285
Tumor
0.9
112
Tumor
0.9
537
Tumor
0.9
663
Tumor
0.9
283
Tumor
0.8
1021
Tumor
0.8
137
Tumor
0.8
123
Tumor
0.8
817
Tumor
0.7
743
Tumor
0.7
1027
Tumor
0.7
131
Tumor
0.7
311
Tumor
0.7
937
Tumor
0.7
355
Tumor
0.7
967
Tumor
0.6
351
Tumor
0.6
877
Tumor
0.6
545
Tumor
0.6
463
Tumor
0.6
451
Tumor
0.6
977
Tumor
0.6
477
Tumor
0.6
341
Tumor
0.6
913
Tumor
0.5
865
Tumor
0.5
617
Tumor
0.5
443
Tumor
0.5
647
Tumor
0.5
525
Tumor
0.5
983
Tumor
0.5
387
Tumor
0.5
211
Tumor
0.5
1015
Tumor
0.5
923
Tumor
0.5
567
Tumor
0.5
471
Tumor
0.5
741
Tumor
0.5
221
Tumor
0.5
497
Tumor
0.5
433
Tumor
0.4
685
Tumor
0.4
861
Tumor
0.4
553
Tumor
0.4
665
Tumor
0.4
517
Tumor
0.4
571
Tumor
0.4
217
Tumor
0.4
447
Tumor
0.4
413
Tumor
0.4
487
Tumor
0.4
921
Tumor
0.4
727
Tumor
0.3
1041
Tumor
0.3
455
Tumor
0.3
431
Tumor
0.3
851
Tumor
0.3
127
Tumor
0.3
423
Tumor
0.3
391
Tumor
0.3
145
Tumor
0.3
1031
Tumor
0.3
745
Tumor
0.3
425
Tumor
0.3
1025
Tumor
0.3
161
Tumor
0.3
737
Tumor
0.3
951
Tumor
0.3
498
Normal
0.3
385
Tumor
0.3
925
Tumor
0.3
538
Normal
0.2
1045
Tumor
0.2
227
Tumor
0.2
715
Tumor
0.2
277
Tumor
0.2
867
Tumor
0.2
361
Tumor
0.2
231
Tumor
0.2
981
Tumor
0.2
881
Tumor
0.2
192
Normal
0.2
1013
Tumor
0.2
554
Normal
0.2
635
Tumor
0.2
185
Tumor
0.2
494
Normal
0.2
911
Tumor
0.2
261
Tumor
0.2
873
Tumor
0.2
465
Tumor
0.2
957
Tumor
0.2
492
Normal
0.1
671
Tumor
0.1
912
Normal
0.1
357
Tumor
0.1
1043
Tumor
0.1
823
Tumor
0.1
195
Tumor
0.1
267
Tumor
0.1
411
Tumor
0.1
272
Normal
0.1
863
Tumor
0.1
421
Tumor
0.1
493
Tumor
0.1
297
Tumor
0.1
536
Normal
0.1
271
Tumor
0.1
415
Tumor
0.1
488
Normal
0.1
171
Tumor
0.1
375
Tumor
0.1
563
Tumor
0.1
427
Tumor
0.1
213
Tumor
0.1
191
Tumor
0.1
383
Tumor
0.0
963
Tumor
0.0
483
Tumor
0.0
478
Normal
0.0
975
Tumor
0.0
135
Tumor
0.0
535
Tumor
0.0
916
Normal
0.0
524
Normal
0.0
141
Tumor
0.0
697
Tumor
0.0
724
Normal
0.0
852
Normal
0.0
484
Normal
0.0
1044
Normal
0.0
461
Tumor
0.0
113
Tumor
0.0
857
Tumor
-0.1
224
Normal
-0.1
147
Tumor
-0.1
546
Normal
-0.1
884
Normal
-0.1
713
Tumor
-0.1
878
Normal
-0.1
384
Normal
-0.1
513
Tumor
-0.1
954
Normal
-0.1
943
Tumor
-0.1
714
Normal
-0.1
882
Normal
-0.1
984
Normal
-0.1
223
Tumor
-0.1
528
Normal
-0.1
331
Tumor
-0.1
467
Tumor
-0.1
516
Normal
-0.1
444
Normal
-0.1
917
Tumor
-0.1
918
Normal
-0.1
142
Normal
-0.1
125
Tumor
-0.1
744
Normal
-0.1
527
Tumor
-0.1
491
Tumor
-0.1
364
Normal
-0.1
214
Normal
-0.1
696
Normal
-0.2
698
Normal
-0.2
187
Tumor
-0.2
196
Normal
-0.2
395
Tumor
-0.2
218
Normal
-0.2
864
Normal
-0.2
686
Normal
-0.2
412
Normal
-0.2
124
Normal
-0.2
356
Normal
-0.2
1026
Normal
-0.2
716
Normal
-0.2
672
Normal
-0.2
284
Normal
-0.2
114
Normal
-0.2
268
Normal
-0.2
514
Normal
-0.2
785
Tumor
-0.2
818
Normal
-0.2
258
Normal
-0.2
472
Normal
-0.2
146
Normal
-0.2
858
Normal
-0.2
534
Normal
-0.2
721
Tumor
-0.2
924
Normal
-0.3
222
Normal
-0.3
574
Normal
-0.3
915
Tumor
-0.3
1022
Normal
-0.3
814
Normal
-0.3
136
Normal
-0.3
914
Normal
-0.3
862
Normal
-0.3
926
Normal
-0.3
482
Normal
-0.3
756
Normal
-0.3
824
Normal
-0.3
1028
Normal
-0.3
526
Normal
-0.3
515
Tumor
-0.3
365
Tumor
-0.3
388
Normal
-0.3
572
Normal
-0.3
518
Normal
-0.3
1032
Normal
-0.3
738
Normal
-0.3
922
Normal
-0.3
778
Normal
-0.3
464
Normal
-0.3
128
Normal
-0.3
1046
Normal
-0.3
1016
Normal
-0.3
1014
Normal
-0.3
982
Normal
-0.3
958
Normal
-0.3
313
Tumor
-0.3
966
Normal
-0.3
392
Normal
-0.3
466
Normal
-0.3
445
Tumor
-0.3
755
Tumor
-0.3
628
Normal
-0.3
232
Normal
-0.3
723
Tumor
-0.4
228
Normal
-0.4
866
Normal
-0.4
132
Normal
-0.4
573
Tumor
-0.4
952
Normal
-0.4
722
Normal
-0.4
434
Normal
-0.4
353
Tumor
-0.4
262
Normal
-0.4
343
Tumor
-0.4
976
Normal
-0.4
564
Normal
-0.4
446
Normal
-0.4
111
Normal
-0.4
662
Normal
-0.4
328
Normal
-0.4
416
Normal
-0.4
126
Normal
-0.4
394
Normal
-0.4
944
Normal
-0.4
968
Normal
-0.4
558
Normal
-0.4
664
Normal
-0.4
1042
Normal
-0.4
386
Normal
-0.4
978
Normal
-0.4
366
Normal
-0.4
257
Tumor
-0.4
396
Normal
-0.4
816
Normal
-0.4
448
Normal
-0.4
138
Normal
-0.4
376
Normal
-0.4
627
Tumor
-0.4
786
Normal
-0.4
424
Normal
-0.4
616
Normal
-0.5
568
Normal
-0.5
742
Normal
-0.5
481
Tumor
-0.5
874
Normal
-0.5
728
Normal
-0.5
938
Normal
-0.5
212
Normal
-0.5
868
Normal
-0.5
327
Tumor
-0.5
462
Normal
-0.5
286
Normal
-0.5
162
Normal
-0.5
474
Normal
-0.5
362
Normal
-0.5
964
Normal
-0.5
468
Normal
-0.5
642
Normal
-0.5
456
Normal
-0.5
618
Normal
-0.5
432
Normal
-0.6
666
Normal
-0.6
648
Normal
-0.6
955
Tumor
-0.6
777
Tumor
-0.6
426
Normal
-0.6
186
Normal
-0.6
813
Tumor
-0.6
172
Normal
-0.6
953
Tumor
-0.6
368
Normal
-0.6
746
Normal
-0.6
188
Normal
-0.6
956
Normal
-0.6
352
Normal
-0.6
452
Normal
-0.6
414
Normal
-0.6
148
Normal
-0.6
636
Normal
-0.6
358
Normal
-0.7
436
Normal
-0.7
422
Normal
-0.7
615
Tumor
-0.7
557
Tumor
-0.7
428
Normal
-0.7
354
Normal
-0.7
332
Normal
-0.7
344
Normal
-0.8
523
Tumor
-0.8
314
Normal
-0.9
393
Tumor
-0.9
342
Normal
-0.9
278
Normal
-0.9
298
Normal
-2.5
312
Normal
-3.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
