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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CPTP is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
78.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
70.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
68.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
59.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
59.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
59.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
58.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
55.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
52.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
50.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
49.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
49.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
48.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
47.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
47.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
47.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
47.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
46.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
46.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
46.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
45.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
45.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
44.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
43.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
43.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
43.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
43.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
43.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
42.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
42.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
42.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
42.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
42.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
41.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
41.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
41.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
40.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
40.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
40.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
39.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
39.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
39.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
39.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
39.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
39.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
38.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
38.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
38.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
38.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
38.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
38.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
38.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
38.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
37.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
37.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
37.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
37.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
37.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
37.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
36.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
36.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
35.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
35.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
35.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
35.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
35.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
35.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
35.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
34.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
34.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
34.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
34.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
34.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
34.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
34.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
33.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
33.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
32.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
32.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
32.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
31.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
31.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
31.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
31.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
31.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
31.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
31.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
31.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
30.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
30.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
30.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
30.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
30.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
30.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
30.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
30.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
29.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
29.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
29.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
29.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
29.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
29.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
28.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
28.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
28.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
28.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
28.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
28.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
28.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
28.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
28.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
28.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
27.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
27.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
27.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
27.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
27.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
27.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
27.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
27.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
27.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
27.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
26.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
26.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
26.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
26.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
26.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
26.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
26.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
26.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
26.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
25.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
25.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
25.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
25.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
25.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
25.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
25.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
25.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
25.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
25.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
25.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
25.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
24.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
23.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
23.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
23.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
23.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
23.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
23.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
23.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
23.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
23.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
22.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
22.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
22.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
22.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
22.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
22.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
22.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
22.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
22.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
22.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
22.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
22.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
21.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
21.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
21.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
21.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
21.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
21.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
21.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
21.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
21.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
21.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
20.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
20.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
20.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
20.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
20.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
20.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
20.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
19.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
19.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
19.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
19.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
19.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
18.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
18.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
18.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
18.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
17.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
17.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
17.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
16.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
13.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
12.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
12.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
0.9
938
Normal
0.8
823
Tumor
0.8
627
Tumor
0.8
513
Tumor
0.7
356
Normal
0.7
813
Tumor
0.7
1022
Normal
0.7
926
Normal
0.7
1026
Normal
0.6
738
Normal
0.6
464
Normal
0.6
112
Tumor
0.6
742
Normal
0.6
452
Normal
0.6
746
Normal
0.6
436
Normal
0.6
1032
Normal
0.6
1042
Normal
0.5
564
Normal
0.5
114
Normal
0.5
518
Normal
0.5
922
Normal
0.5
628
Normal
0.5
416
Normal
0.5
723
Tumor
0.5
953
Tumor
0.5
278
Normal
0.5
1028
Normal
0.5
412
Normal
0.5
862
Normal
0.5
128
Normal
0.5
1021
Tumor
0.5
944
Normal
0.5
958
Normal
0.5
286
Normal
0.5
663
Tumor
0.5
568
Normal
0.4
882
Normal
0.4
148
Normal
0.4
432
Normal
0.4
111
Normal
0.4
618
Normal
0.4
642
Normal
0.4
554
Normal
0.4
956
Normal
0.4
214
Normal
0.4
952
Normal
0.4
222
Normal
0.4
515
Tumor
0.4
1041
Tumor
0.4
284
Normal
0.4
228
Normal
0.4
358
Normal
0.4
527
Tumor
0.4
525
Tumor
0.4
427
Tumor
0.4
414
Normal
0.4
342
Normal
0.4
124
Normal
0.4
364
Normal
0.4
728
Normal
0.4
864
Normal
0.4
722
Normal
0.4
698
Normal
0.4
456
Normal
0.4
298
Normal
0.4
546
Normal
0.4
332
Normal
0.4
636
Normal
0.4
816
Normal
0.4
126
Normal
0.3
1016
Normal
0.3
1014
Normal
0.3
616
Normal
0.3
982
Normal
0.3
756
Normal
0.3
368
Normal
0.3
648
Normal
0.3
313
Tumor
0.3
231
Tumor
0.3
376
Normal
0.3
314
Normal
0.3
528
Normal
0.3
361
Tumor
0.3
918
Normal
0.3
868
Normal
0.3
424
Normal
0.3
968
Normal
0.3
878
Normal
0.3
786
Normal
0.3
196
Normal
0.3
615
Tumor
0.3
852
Normal
0.3
344
Normal
0.3
474
Normal
0.3
451
Tumor
0.3
258
Normal
0.3
664
Normal
0.3
572
Normal
0.3
824
Normal
0.3
874
Normal
0.3
516
Normal
0.3
426
Normal
0.3
924
Normal
0.3
737
Tumor
0.3
884
Normal
0.3
666
Normal
0.3
232
Normal
0.3
446
Normal
0.3
514
Normal
0.3
526
Normal
0.3
778
Normal
0.3
212
Normal
0.3
186
Normal
0.3
312
Normal
0.3
362
Normal
0.3
466
Normal
0.3
866
Normal
0.3
574
Normal
0.3
481
Tumor
0.3
465
Tumor
0.3
955
Tumor
0.3
422
Normal
0.3
272
Normal
0.2
224
Normal
0.2
662
Normal
0.2
981
Tumor
0.2
188
Normal
0.2
954
Normal
0.2
448
Normal
0.2
462
Normal
0.2
162
Normal
0.2
172
Normal
0.2
415
Tumor
0.2
482
Normal
0.2
524
Normal
0.2
142
Normal
0.2
571
Tumor
0.2
857
Tumor
0.2
352
Normal
0.2
685
Tumor
0.2
354
Normal
0.2
534
Normal
0.2
858
Normal
0.2
365
Tumor
0.2
744
Normal
0.2
268
Normal
0.2
257
Tumor
0.2
964
Normal
0.2
1013
Tumor
0.2
472
Normal
0.2
491
Tumor
0.2
218
Normal
0.2
984
Normal
0.2
865
Tumor
0.2
125
Tumor
0.2
383
Tumor
0.2
468
Normal
0.2
697
Tumor
0.2
192
Normal
0.2
161
Tumor
0.1
434
Normal
0.1
494
Normal
0.1
1046
Normal
0.1
976
Normal
0.1
914
Normal
0.1
428
Normal
0.1
716
Normal
0.1
538
Normal
0.1
714
Normal
0.1
558
Normal
0.1
978
Normal
0.1
493
Tumor
0.1
396
Normal
0.1
916
Normal
0.1
951
Tumor
0.1
388
Normal
0.1
384
Normal
0.1
433
Tumor
0.1
741
Tumor
0.1
277
Tumor
0.1
814
Normal
0.1
444
Normal
0.1
386
Normal
0.1
818
Normal
0.1
394
Normal
0.1
138
Normal
0.1
392
Normal
0.0
123
Tumor
0.0
132
Normal
0.0
488
Normal
0.0
195
Tumor
0.0
366
Normal
0.0
635
Tumor
0.0
227
Tumor
0.0
492
Normal
0.0
484
Normal
0.0
966
Normal
0.0
477
Tumor
0.0
423
Tumor
0.0
213
Tumor
0.0
395
Tumor
0.0
696
Normal
0.0
912
Normal
0.0
755
Tumor
0.0
136
Normal
0.0
563
Tumor
0.0
262
Normal
0.0
925
Tumor
0.0
478
Normal
0.0
777
Tumor
0.0
727
Tumor
0.0
863
Tumor
0.0
967
Tumor
0.0
536
Normal
0.0
445
Tumor
0.0
785
Tumor
0.0
171
Tumor
0.0
937
Tumor
-0.1
267
Tumor
-0.1
867
Tumor
-0.1
533
Tumor
-0.1
461
Tumor
-0.1
431
Tumor
-0.1
217
Tumor
-0.1
915
Tumor
-0.1
113
Tumor
-0.1
328
Normal
-0.1
375
Tumor
-0.1
977
Tumor
-0.1
672
Normal
-0.1
883
Tumor
-0.1
483
Tumor
-0.1
185
Tumor
-0.1
695
Tumor
-0.1
435
Tumor
-0.1
1045
Tumor
-0.1
943
Tumor
-0.1
873
Tumor
-0.1
327
Tumor
-0.1
467
Tumor
-0.1
341
Tumor
-0.2
497
Tumor
-0.2
357
Tumor
-0.2
617
Tumor
-0.2
137
Tumor
-0.2
271
Tumor
-0.2
425
Tumor
-0.2
411
Tumor
-0.2
913
Tumor
-0.2
283
Tumor
-0.2
146
Normal
-0.2
353
Tumor
-0.2
147
Tumor
-0.2
1044
Normal
-0.2
191
Tumor
-0.2
686
Normal
-0.2
498
Normal
-0.2
557
Tumor
-0.2
963
Tumor
-0.3
387
Tumor
-0.3
957
Tumor
-0.3
721
Tumor
-0.3
343
Tumor
-0.3
713
Tumor
-0.3
261
Tumor
-0.3
421
Tumor
-0.3
487
Tumor
-0.3
917
Tumor
-0.3
447
Tumor
-0.3
285
Tumor
-0.3
647
Tumor
-0.3
391
Tumor
-0.3
413
Tumor
-0.3
443
Tumor
-0.3
881
Tumor
-0.4
221
Tumor
-0.4
367
Tumor
-0.4
724
Normal
-0.4
573
Tumor
-0.4
187
Tumor
-0.4
311
Tumor
-0.4
567
Tumor
-0.4
473
Tumor
-0.4
141
Tumor
-0.4
877
Tumor
-0.4
537
Tumor
-0.4
223
Tumor
-0.4
1025
Tumor
-0.4
553
Tumor
-0.4
1031
Tumor
-0.5
861
Tumor
-0.5
127
Tumor
-0.5
641
Tumor
-0.5
297
Tumor
-0.5
1015
Tumor
-0.5
463
Tumor
-0.5
923
Tumor
-0.5
471
Tumor
-0.5
745
Tumor
-0.5
817
Tumor
-0.6
145
Tumor
-0.6
455
Tumor
-0.6
975
Tumor
-0.6
331
Tumor
-0.6
355
Tumor
-0.6
911
Tumor
-0.6
851
Tumor
-0.6
517
Tumor
-0.6
545
Tumor
-0.7
385
Tumor
-0.7
135
Tumor
-0.7
921
Tumor
-0.7
661
Tumor
-0.7
351
Tumor
-0.7
393
Tumor
-0.7
535
Tumor
-0.7
665
Tumor
-0.8
671
Tumor
-0.8
211
Tumor
-0.8
523
Tumor
-0.8
363
Tumor
-0.8
965
Tumor
-0.9
743
Tumor
-0.9
1043
Tumor
-0.9
715
Tumor
-1.0
131
Tumor
-1.1
815
Tumor
-1.2
983
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
