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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VPS52 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
33.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
29.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
29.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
29.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
26.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
26.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
25.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
23.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
22.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
21.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
20.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
16.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
9.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
3.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VPS52 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.1
Number of samples
231
Samples
Sample
Description
TPM
DO48746
0 years, male, NA, stage:3, alive, 570 days
94.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
79.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
62.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
61.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
55.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
53.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
53.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
48.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
47.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
47.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
43.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
42.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
42.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
42.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
42.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
41.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
41.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
41.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
41.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
40.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
39.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
39.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
39.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
37.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
37.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
37.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
37.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
36.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
36.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
36.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
36.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
36.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
36.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
34.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
33.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
33.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
33.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
33.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
32.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
32.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
30.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
30.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
30.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
30.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
30.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
30.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
30.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
30.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
30.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
29.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
29.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
29.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
29.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
29.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
29.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
28.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
28.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
28.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
28.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
28.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
27.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
27.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
27.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
27.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
27.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
27.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
27.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
27.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
27.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
27.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
27.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
27.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
27.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
26.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
26.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
26.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
26.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
26.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
26.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
26.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
26.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
25.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
25.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
25.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
24.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
24.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
24.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
24.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
24.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
24.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
24.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
24.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
24.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
23.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
23.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
23.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
23.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
23.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
23.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
23.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
23.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
23.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
23.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
23.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
23.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
23.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
23.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
23.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
23.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
23.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
22.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
22.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
22.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
22.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
22.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
22.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
21.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
21.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
21.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
21.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
21.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
20.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
20.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
19.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
19.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
19.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
18.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
18.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
17.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
17.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
665
Tumor
0.5
445
Tumor
0.4
443
Tumor
0.4
635
Tumor
0.4
743
Tumor
0.4
147
Tumor
0.4
431
Tumor
0.4
627
Tumor
0.4
553
Tumor
0.4
1027
Tumor
0.4
137
Tumor
0.4
641
Tumor
0.4
257
Tumor
0.4
873
Tumor
0.4
527
Tumor
0.3
395
Tumor
0.3
1031
Tumor
0.3
1021
Tumor
0.3
883
Tumor
0.3
425
Tumor
0.3
313
Tumor
0.3
615
Tumor
0.3
863
Tumor
0.3
911
Tumor
0.3
387
Tumor
0.3
737
Tumor
0.3
865
Tumor
0.3
223
Tumor
0.3
145
Tumor
0.3
421
Tumor
0.3
365
Tumor
0.3
951
Tumor
0.3
413
Tumor
0.3
131
Tumor
0.3
877
Tumor
0.3
327
Tumor
0.3
361
Tumor
0.3
913
Tumor
0.2
351
Tumor
0.2
727
Tumor
0.2
915
Tumor
0.2
125
Tumor
0.2
427
Tumor
0.2
135
Tumor
0.2
1045
Tumor
0.2
423
Tumor
0.2
1041
Tumor
0.2
271
Tumor
0.2
741
Tumor
0.2
221
Tumor
0.2
661
Tumor
0.2
685
Tumor
0.2
187
Tumor
0.2
262
Normal
0.2
967
Tumor
0.2
573
Tumor
0.2
636
Normal
0.2
515
Tumor
0.2
231
Tumor
0.2
957
Tumor
0.2
497
Tumor
0.2
123
Tumor
0.2
697
Tumor
0.2
514
Normal
0.2
557
Tumor
0.2
261
Tumor
0.2
433
Tumor
0.2
383
Tumor
0.2
426
Normal
0.2
777
Tumor
0.2
1043
Tumor
0.2
191
Tumor
0.2
283
Tumor
0.2
977
Tumor
0.2
411
Tumor
0.2
642
Normal
0.2
728
Normal
0.2
332
Normal
0.1
925
Tumor
0.1
353
Tumor
0.1
814
Normal
0.1
955
Tumor
0.1
937
Tumor
0.1
331
Tumor
0.1
268
Normal
0.1
813
Tumor
0.1
713
Tumor
0.1
455
Tumor
0.1
818
Normal
0.1
113
Tumor
0.1
375
Tumor
0.1
368
Normal
0.1
981
Tumor
0.1
975
Tumor
0.1
964
Normal
0.1
868
Normal
0.1
297
Tumor
0.1
524
Normal
0.1
428
Normal
0.1
341
Tumor
0.1
444
Normal
0.1
745
Tumor
0.1
232
Normal
0.1
513
Tumor
0.1
356
Normal
0.1
647
Tumor
0.1
671
Tumor
0.1
722
Normal
0.1
616
Normal
0.1
132
Normal
0.1
724
Normal
0.1
672
Normal
0.1
1013
Tumor
0.1
917
Tumor
0.1
628
Normal
0.1
141
Tumor
0.1
218
Normal
0.1
222
Normal
0.1
414
Normal
0.1
861
Tumor
0.1
424
Normal
0.1
867
Tumor
0.1
921
Tumor
0.1
446
Normal
0.1
545
Tumor
0.1
128
Normal
0.1
224
Normal
0.1
564
Normal
0.1
196
Normal
0.1
663
Tumor
0.1
618
Normal
0.1
1044
Normal
0.1
526
Normal
0.1
286
Normal
0.1
278
Normal
0.1
912
Normal
0.1
824
Normal
0.1
422
Normal
0.1
567
Tumor
0.1
563
Tumor
0.1
471
Tumor
0.1
148
Normal
0.1
195
Tumor
0.1
434
Normal
0.1
136
Normal
0.1
388
Normal
0.1
188
Normal
0.1
481
Tumor
0.1
366
Normal
0.1
212
Normal
0.1
285
Tumor
0.1
786
Normal
0.1
756
Normal
0.1
186
Normal
0.1
228
Normal
0.1
343
Tumor
0.1
391
Tumor
0.1
312
Normal
0.1
258
Normal
0.1
491
Tumor
0.1
487
Tumor
0.1
298
Normal
0.1
396
Normal
0.1
352
Normal
0.0
493
Tumor
0.0
662
Normal
0.0
162
Normal
0.0
217
Tumor
0.0
124
Normal
0.0
536
Normal
0.0
314
Normal
0.0
858
Normal
0.0
723
Tumor
0.0
284
Normal
0.0
384
Normal
0.0
517
Tumor
0.0
386
Normal
0.0
464
Normal
0.0
451
Tumor
0.0
518
Normal
0.0
172
Normal
0.0
862
Normal
0.0
528
Normal
0.0
146
Normal
0.0
185
Tumor
0.0
1015
Tumor
0.0
852
Normal
0.0
126
Normal
0.0
367
Tumor
0.0
755
Tumor
0.0
385
Tumor
0.0
823
Tumor
0.0
456
Normal
0.0
533
Tumor
0.0
211
Tumor
0.0
537
Tumor
0.0
1042
Normal
0.0
267
Tumor
0.0
516
Normal
0.0
874
Normal
0.0
648
Normal
0.0
914
Normal
0.0
924
Normal
0.0
138
Normal
0.0
392
Normal
0.0
664
Normal
0.0
525
Tumor
0.0
1028
Normal
0.0
715
Tumor
0.0
968
Normal
0.0
272
Normal
0.0
467
Tumor
0.0
498
Normal
0.0
558
Normal
0.0
1025
Tumor
0.0
1046
Normal
0.0
568
Normal
0.0
393
Tumor
0.0
916
Normal
0.0
744
Normal
0.0
311
Tumor
0.0
482
Normal
0.0
778
Normal
0.0
943
Tumor
0.0
538
Normal
0.0
358
Normal
0.0
976
Normal
0.0
954
Normal
0.0
354
Normal
0.0
884
Normal
0.0
416
Normal
0.0
328
Normal
0.0
866
Normal
0.0
851
Tumor
0.0
535
Tumor
0.0
958
Normal
0.0
978
Normal
0.0
447
Tumor
0.0
966
Normal
0.0
127
Tumor
0.0
394
Normal
0.0
881
Tumor
0.0
984
Normal
0.0
114
Normal
0.0
362
Normal
0.0
785
Tumor
0.0
982
Normal
0.0
463
Tumor
0.0
142
Normal
0.0
666
Normal
0.0
815
Tumor
0.0
468
Normal
0.0
1016
Normal
0.0
111
Normal
0.0
738
Normal
0.0
344
Normal
0.0
1022
Normal
0.0
488
Normal
0.0
432
Normal
0.0
944
Normal
-0.1
435
Tumor
-0.1
376
Normal
-0.1
436
Normal
-0.1
461
Tumor
-0.1
214
Normal
-0.1
882
Normal
-0.1
192
Normal
-0.1
686
Normal
-0.1
213
Tumor
-0.1
227
Tumor
-0.1
817
Tumor
-0.1
864
Normal
-0.1
357
Tumor
-0.1
412
Normal
-0.1
478
Normal
-0.1
574
Normal
-0.1
1026
Normal
-0.1
364
Normal
-0.1
953
Tumor
-0.1
1032
Normal
-0.1
462
Normal
-0.1
534
Normal
-0.1
926
Normal
-0.1
923
Tumor
-0.1
477
Tumor
-0.1
878
Normal
-0.1
415
Tumor
-0.1
473
Tumor
-0.1
922
Normal
-0.1
452
Normal
-0.1
918
Normal
-0.1
492
Normal
-0.1
746
Normal
-0.1
816
Normal
-0.1
448
Normal
-0.1
716
Normal
-0.1
695
Tumor
-0.1
938
Normal
-0.1
956
Normal
-0.1
277
Tumor
-0.1
342
Normal
-0.1
696
Normal
-0.1
698
Normal
-0.1
546
Normal
-0.1
952
Normal
-0.1
742
Normal
-0.1
494
Normal
-0.1
465
Tumor
-0.1
171
Tumor
-0.1
983
Tumor
-0.1
554
Normal
-0.1
1014
Normal
-0.1
484
Normal
-0.1
483
Tumor
-0.2
474
Normal
-0.2
572
Normal
-0.2
857
Tumor
-0.2
714
Normal
-0.2
963
Tumor
-0.2
472
Normal
-0.2
965
Tumor
-0.2
363
Tumor
-0.2
571
Tumor
-0.2
617
Tumor
-0.2
466
Normal
-0.2
721
Tumor
-0.2
112
Tumor
-0.2
161
Tumor
-0.2
523
Tumor
-0.3
355
Tumor
-0.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
