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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FADS3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
96.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
84.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
73.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
59.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
57.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
54.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
52.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
47.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
47.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
46.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
45.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
44.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
42.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
42.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
42.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
41.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
41.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
40.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
38.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
35.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
34.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
34.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
33.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
32.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
32.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
32.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
31.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
30.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
29.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
29.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
29.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
29.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
28.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
28.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
28.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
27.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
27.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
27.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
27.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
27.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
27.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
27.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
26.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
26.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
26.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
26.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
26.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
26.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
26.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
25.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
25.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
25.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
25.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
25.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
25.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
24.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
24.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
24.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
23.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
23.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
23.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
22.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
22.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
22.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
22.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
22.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
22.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
22.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
21.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
21.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
21.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
21.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
21.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
21.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
20.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
20.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
20.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
20.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
19.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
19.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
19.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
19.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
18.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
18.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
17.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
17.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
17.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
17.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
17.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
16.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
16.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
16.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
16.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
16.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
15.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
14.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
13.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FADS3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.1
Number of samples
231
Samples
Sample
Description
TPM
DO48732
0 years, male, NA, stage:3, alive, 630 days
53.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
51.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
50.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
45.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
43.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
40.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
37.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
37.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
36.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
35.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
31.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
31.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
30.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
29.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
27.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
27.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
27.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
26.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
26.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
25.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
24.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
24.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
23.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
23.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
23.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
22.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
22.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
21.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
20.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
20.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
18.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
17.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
16.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
16.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
661
Tumor
3.2
463
Tumor
2.3
663
Tumor
1.8
257
Tumor
1.4
375
Tumor
1.4
387
Tumor
1.3
671
Tumor
1.3
451
Tumor
1.2
125
Tumor
1.2
267
Tumor
1.2
487
Tumor
1.2
411
Tumor
1.2
435
Tumor
1.2
367
Tumor
1.1
617
Tumor
1.0
685
Tumor
1.0
1027
Tumor
1.0
567
Tumor
0.9
363
Tumor
0.8
491
Tumor
0.8
365
Tumor
0.8
647
Tumor
0.8
477
Tumor
0.8
361
Tumor
0.8
863
Tumor
0.7
537
Tumor
0.7
391
Tumor
0.7
883
Tumor
0.7
141
Tumor
0.6
145
Tumor
0.6
517
Tumor
0.6
523
Tumor
0.6
877
Tumor
0.6
527
Tumor
0.6
641
Tumor
0.6
113
Tumor
0.5
283
Tumor
0.5
351
Tumor
0.5
535
Tumor
0.5
913
Tumor
0.5
967
Tumor
0.5
483
Tumor
0.5
285
Tumor
0.5
963
Tumor
0.5
123
Tumor
0.4
355
Tumor
0.4
953
Tumor
0.4
427
Tumor
0.4
721
Tumor
0.4
366
Normal
0.4
128
Normal
0.4
112
Tumor
0.4
227
Tumor
0.4
127
Tumor
0.4
162
Normal
0.4
137
Tumor
0.4
211
Tumor
0.4
172
Normal
0.4
186
Normal
0.4
957
Tumor
0.4
635
Tumor
0.3
741
Tumor
0.3
493
Tumor
0.3
388
Normal
0.3
642
Normal
0.3
756
Normal
0.3
665
Tumor
0.3
188
Normal
0.3
1015
Tumor
0.3
224
Normal
0.3
915
Tumor
0.3
443
Tumor
0.3
114
Normal
0.3
148
Normal
0.3
124
Normal
0.3
686
Normal
0.3
745
Tumor
0.3
368
Normal
0.3
258
Normal
0.3
1041
Tumor
0.3
111
Normal
0.3
461
Tumor
0.3
376
Normal
0.2
423
Tumor
0.2
868
Normal
0.2
627
Tumor
0.2
343
Tumor
0.2
554
Normal
0.2
911
Tumor
0.2
433
Tumor
0.2
383
Tumor
0.2
341
Tumor
0.2
498
Normal
0.2
394
Normal
0.2
135
Tumor
0.2
395
Tumor
0.2
344
Normal
0.2
524
Normal
0.2
421
Tumor
0.2
786
Normal
0.2
413
Tumor
0.2
386
Normal
0.2
126
Normal
0.2
851
Tumor
0.2
713
Tumor
0.2
857
Tumor
0.2
434
Normal
0.2
563
Tumor
0.2
384
Normal
0.2
818
Normal
0.2
272
Normal
0.2
714
Normal
0.2
1032
Normal
0.2
571
Tumor
0.2
742
Normal
0.1
514
Normal
0.1
982
Normal
0.1
232
Normal
0.1
1042
Normal
0.1
573
Tumor
0.1
445
Tumor
0.1
385
Tumor
0.1
823
Tumor
0.1
536
Normal
0.1
228
Normal
0.1
867
Tumor
0.1
755
Tumor
0.1
553
Tumor
0.1
975
Tumor
0.1
813
Tumor
0.1
362
Normal
0.1
147
Tumor
0.1
852
Normal
0.1
777
Tumor
0.1
574
Normal
0.1
268
Normal
0.1
396
Normal
0.1
534
Normal
0.1
958
Normal
0.1
695
Tumor
0.1
526
Normal
0.1
965
Tumor
0.1
746
Normal
0.1
564
Normal
0.1
568
Normal
0.1
161
Tumor
0.1
185
Tumor
0.1
392
Normal
0.1
1021
Tumor
0.1
873
Tumor
0.1
444
Normal
0.0
817
Tumor
0.0
1045
Tumor
0.0
698
Normal
0.0
981
Tumor
0.0
187
Tumor
0.0
785
Tumor
0.0
426
Normal
0.0
357
Tumor
0.0
557
Tumor
0.0
916
Normal
0.0
976
Normal
0.0
464
Normal
0.0
938
Normal
0.0
866
Normal
0.0
217
Tumor
0.0
436
Normal
0.0
954
Normal
0.0
956
Normal
0.0
778
Normal
0.0
874
Normal
0.0
944
Normal
0.0
492
Normal
0.0
448
Normal
0.0
964
Normal
0.0
262
Normal
0.0
488
Normal
0.0
393
Tumor
0.0
546
Normal
0.0
538
Normal
0.0
428
Normal
0.0
722
Normal
0.0
195
Tumor
0.0
918
Normal
0.0
516
Normal
0.0
494
Normal
0.0
424
Normal
-0.1
955
Tumor
-0.1
525
Tumor
-0.1
744
Normal
-0.1
191
Tumor
-0.1
1043
Tumor
-0.1
1031
Tumor
-0.1
446
Normal
-0.1
221
Tumor
-0.1
545
Tumor
-0.1
1028
Normal
-0.1
132
Normal
-0.1
484
Normal
-0.1
415
Tumor
-0.1
984
Normal
-0.1
1022
Normal
-0.1
414
Normal
-0.1
473
Tumor
-0.1
824
Normal
-0.1
447
Tumor
-0.1
917
Tumor
-0.1
212
Normal
-0.1
1046
Normal
-0.1
1014
Normal
-0.1
924
Normal
-0.1
513
Tumor
-0.1
1016
Normal
-0.1
697
Tumor
-0.1
951
Tumor
-0.1
858
Normal
-0.1
528
Normal
-0.1
696
Normal
-0.1
231
Tumor
-0.1
452
Normal
-0.1
412
Normal
-0.1
518
Normal
-0.2
937
Tumor
-0.2
727
Tumor
-0.2
966
Normal
-0.2
716
Normal
-0.2
968
Normal
-0.2
743
Tumor
-0.2
497
Tumor
-0.2
1026
Normal
-0.2
925
Tumor
-0.2
923
Tumor
-0.2
431
Tumor
-0.2
515
Tumor
-0.2
1044
Normal
-0.2
922
Normal
-0.2
213
Tumor
-0.2
672
Normal
-0.2
816
Normal
-0.2
468
Normal
-0.2
914
Normal
-0.2
422
Normal
-0.2
342
Normal
-0.2
558
Normal
-0.2
814
Normal
-0.2
636
Normal
-0.2
664
Normal
-0.3
364
Normal
-0.3
353
Tumor
-0.3
455
Tumor
-0.3
481
Tumor
-0.3
943
Tumor
-0.3
723
Tumor
-0.3
456
Normal
-0.3
284
Normal
-0.3
472
Normal
-0.3
223
Tumor
-0.3
533
Tumor
-0.3
862
Normal
-0.3
738
Normal
-0.3
171
Tumor
-0.3
952
Normal
-0.3
728
Normal
-0.3
142
Normal
-0.3
912
Normal
-0.3
352
Normal
-0.3
354
Normal
-0.3
978
Normal
-0.3
864
Normal
-0.3
724
Normal
-0.3
884
Normal
-0.3
618
Normal
-0.3
572
Normal
-0.3
881
Tumor
-0.3
715
Tumor
-0.3
416
Normal
-0.3
815
Tumor
-0.4
1025
Tumor
-0.4
662
Normal
-0.4
138
Normal
-0.4
628
Normal
-0.4
878
Normal
-0.4
261
Tumor
-0.4
432
Normal
-0.4
222
Normal
-0.4
425
Tumor
-0.4
271
Tumor
-0.4
482
Normal
-0.4
977
Tumor
-0.4
471
Tumor
-0.4
328
Normal
-0.4
462
Normal
-0.4
196
Normal
-0.4
921
Tumor
-0.5
286
Normal
-0.5
214
Normal
-0.5
465
Tumor
-0.5
983
Tumor
-0.5
136
Normal
-0.5
131
Tumor
-0.5
478
Normal
-0.5
882
Normal
-0.5
192
Normal
-0.6
466
Normal
-0.6
474
Normal
-0.6
218
Normal
-0.6
1013
Tumor
-0.6
737
Tumor
-0.6
327
Tumor
-0.6
926
Normal
-0.6
616
Normal
-0.6
865
Tumor
-0.6
467
Tumor
-0.6
356
Normal
-0.7
146
Normal
-0.7
615
Tumor
-0.7
358
Normal
-0.7
861
Tumor
-0.9
666
Normal
-1.2
648
Normal
-1.3
277
Tumor
N/A
278
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
