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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VAMP2 is not prognostic in Glioblastoma Multiforme (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
3-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
3-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
114.5
Number of samples
141
Samples
Sample
Description
TPM
TCGA-32-1980-01A
0 years, male, white, stage:'--, dead, 36 days
356.0
TCGA-06-5411-01A
0 years, male, white, stage:'--, dead, 254 days
351.5
TCGA-19-1390-01A
0 years, female, white, stage:'--, dead, 772 days
307.4
TCGA-12-0618-01A
0 years, male, white, stage:'--, dead, 395 days
269.3
TCGA-06-0749-01A
0 years, male, black or african american, stage:'--, dead, 82 days
260.0
TCGA-28-2514-01A
0 years, male, asian, stage:'--, alive, 160 days
258.0
TCGA-06-0132-01A
0 years, male, white, stage:'--, dead, 771 days
205.9
TCGA-19-5960-01A
0 years, male, white, stage:'--, dead, 455 days
202.1
TCGA-06-0686-01A
0 years, male, white, stage:'--, dead, 432 days
191.8
TCGA-06-1804-01A
0 years, female, white, stage:'--, dead, 414 days
187.6
TCGA-28-5207-01A
0 years, male, white, stage:'--, dead, 343 days
186.1
TCGA-15-0742-01A
0 years, male, white, stage:'--, dead, 419 days
179.5
TCGA-06-5856-01A
0 years, male, white, stage:'--, dead, 114 days
168.5
TCGA-06-0747-01A
0 years, male, white, stage:'--, dead, 82 days
161.9
TCGA-06-0878-01A
0 years, male, white, stage:'--, alive, 218 days
160.9
TCGA-06-2565-01A
0 years, male, asian, stage:'--, dead, 506 days
160.2
TCGA-06-5408-01A
0 years, female, white, stage:'--, dead, 357 days
156.3
TCGA-06-0238-01A
0 years, male, white, stage:'--, dead, 405 days
155.0
TCGA-41-4097-01A
0 years, female, white, stage:'--, dead, 6 days
154.5
TCGA-32-1970-01A
0 years, male, white, stage:'--, dead, 468 days
153.3
TCGA-06-5417-01A
0 years, female, white, stage:'--, alive, 155 days
152.9
TCGA-76-4931-01A
0 years, female, white, stage:'--, dead, 279 days
152.2
TCGA-06-0158-01A
0 years, male, white, stage:'--, dead, 329 days
148.7
TCGA-06-0174-01A
0 years, male, white, stage:'--, dead, 98 days
147.0
TCGA-02-0047-01A
0 years, male, white, stage:'--, dead, 448 days
146.7
TCGA-06-2562-01A
0 years, male, white, stage:'--, dead, 382 days
146.2
TCGA-19-2619-01A
0 years, female, black or african american, stage:'--, alive, 294 days
145.8
TCGA-26-5132-01A
0 years, male, white, stage:'--, alive, 286 days
144.3
TCGA-06-0138-01A
0 years, male, white, stage:'--, dead, 737 days
142.6
TCGA-06-2570-01A
0 years, female, white, stage:'--, alive, 958 days
141.7
TCGA-06-0129-01A
0 years, male, asian, stage:'--, dead, 1024 days
141.6
TCGA-08-0386-01A
0 years, male, white, stage:'--, dead, 548 days
140.9
TCGA-06-0745-01A
0 years, male, white, stage:'--, dead, 239 days
139.8
TCGA-28-5216-01A
0 years, male, white, stage:'--, alive, 415 days
139.7
TCGA-76-4932-01A
0 years, female, white, stage:'--, dead, 1458 days
139.4
TCGA-06-5859-01A
0 years, male, white, stage:'--, alive, 139 days
139.3
TCGA-12-3650-01A
0 years, male, white, stage:'--, dead, 333 days
139.3
TCGA-14-1825-01A
0 years, male, white, stage:'--, dead, 232 days
138.3
TCGA-06-5418-01A
0 years, female, white, stage:'--, dead, 83 days
136.9
TCGA-06-2558-01A
0 years, female, white, stage:'--, dead, 380 days
134.4
TCGA-06-0187-01A
0 years, male, white, stage:'--, dead, 828 days
134.3
TCGA-76-4929-01A
0 years, female, white, stage:'--, dead, 111 days
133.8
TCGA-06-2559-01A
0 years, male, white, stage:'--, dead, 150 days
132.9
TCGA-06-0882-01A
0 years, male, white, stage:'--, dead, 632 days
130.7
TCGA-32-2634-01A
0 years, male, white, stage:'--, alive, 693 days
130.4
TCGA-14-0787-01A
0 years, male, asian, stage:'--, dead, 68 days
130.4
TCGA-06-2564-01A
0 years, male, white, stage:'--, alive, 181 days
130.0
TCGA-32-2615-01A
0 years, male, white, stage:'--, dead, 485 days
128.6
TCGA-02-2485-01A
0 years, male, black or african american, stage:'--, alive, 470 days
128.2
TCGA-06-2563-01A
0 years, female, white, stage:'--, alive, 932 days
128.1
TCGA-06-0750-01A
0 years, male, white, stage:'--, dead, 28 days
128.0
TCGA-02-2483-01A
0 years, male, asian, stage:'--, alive, 466 days
127.9
TCGA-41-2571-01A
0 years, male, white, stage:'--, dead, 26 days
127.7
TCGA-41-5651-01A
0 years, female, black or african american, stage:'--, dead, 460 days
127.4
TCGA-06-0646-01A
0 years, male, white, stage:'--, dead, 175 days
126.8
TCGA-15-1444-01A
0 years, male, white, stage:'--, dead, 1537 days
126.4
TCGA-28-5220-01A
0 years, male, white, stage:'--, dead, 388 days
125.8
TCGA-16-0846-01A
0 years, male, white, stage:'--, dead, 119 days
125.7
TCGA-28-5204-01A
0 years, male, white, stage:'--, dead, 454 days
125.3
TCGA-12-3653-01A
0 years, female, white, stage:'--, dead, 442 days
124.6
TCGA-19-2625-01A
0 years, female, white, stage:'--, dead, 124 days
123.9
TCGA-06-0210-01A
0 years, female, white, stage:'--, dead, 225 days
121.6
TCGA-27-1834-01A
0 years, male, white, stage:'--, dead, 1233 days
121.0
TCGA-06-0156-01A
0 years, male, white, stage:'--, dead, 178 days
120.8
TCGA-32-1982-01A
0 years, female, white, stage:'--, dead, 142 days
118.9
TCGA-19-2620-01A
0 years, male, white, stage:'--, dead, 148 days
116.0
TCGA-12-0821-01A
0 years, male, white, stage:'--, dead, 323 days
115.6
TCGA-06-0168-01A
0 years, female, white, stage:'--, dead, 598 days
115.5
TCGA-02-2486-01A
0 years, male, white, stage:'--, dead, 618 days
114.9
TCGA-26-1442-01A
0 years, male, white, stage:'--, alive, 953 days
113.3
TCGA-06-5858-01A
0 years, female, white, stage:'--, alive, 187 days
112.9
TCGA-06-0743-01A
0 years, male, white, stage:'--, dead, 803 days
111.5
TCGA-06-0157-01A
0 years, female, white, stage:'--, dead, 97 days
111.2
TCGA-27-2523-01A
0 years, male, white, stage:'--, dead, 489 days
110.0
TCGA-06-2567-01A
0 years, male, white, stage:'--, dead, 133 days
110.0
TCGA-26-5135-01A
0 years, female, white, stage:'--, dead, 270 days
109.1
TCGA-26-5139-01A
0 years, female, white, stage:'--, alive, 48 days
107.5
TCGA-06-5416-01A
0 years, female, white, stage:'--, alive, 204 days
107.4
TCGA-06-2561-01A
0 years, female, white, stage:'--, dead, 537 days
105.9
TCGA-06-0645-01A
0 years, female, white, stage:'--, dead, 175 days
105.7
TCGA-12-0616-01A
0 years, female, white, stage:'--, dead, 448 days
104.3
TCGA-28-1753-01A
0 years, male, white, stage:'--, alive, 37 days
104.3
TCGA-27-2528-01A
0 years, male, white, stage:'--, dead, 480 days
103.7
TCGA-06-0219-01A
0 years, male, white, stage:'--, dead, 22 days
102.5
TCGA-32-2638-01A
0 years, male, white, stage:'--, dead, 766 days
102.0
TCGA-76-4927-01A
0 years, male, white, stage:'--, dead, 535 days
101.4
TCGA-06-2557-01A
0 years, male, black or african american, stage:'--, dead, 33 days
96.5
TCGA-27-1830-01A
0 years, male, white, stage:'--, dead, 154 days
96.0
TCGA-06-0125-01A
0 years, female, white, stage:'--, dead, 1448 days
95.9
TCGA-28-5209-01A
0 years, female, white, stage:'--, alive, 442 days
94.7
TCGA-06-0744-01A
0 years, male, white, stage:'--, dead, 1426 days
93.7
TCGA-27-1837-01A
0 years, male, white, stage:'--, dead, 427 days
92.8
TCGA-27-2521-01A
0 years, male, white, stage:'--, dead, 510 days
90.9
TCGA-32-2632-01A
0 years, male, white, stage:'--, dead, 269 days
90.5
TCGA-06-0141-01A
0 years, male, white, stage:'--, dead, 313 days
90.4
TCGA-19-2624-01A
0 years, male, white, stage:'--, dead, 5 days
87.6
TCGA-06-0211-01A
0 years, male, white, stage:'--, dead, 360 days
83.8
TCGA-14-0789-01A
0 years, male, white, stage:'--, dead, 342 days
81.8
TCGA-06-5414-01A
0 years, male, white, stage:'--, alive, 273 days
81.5
TCGA-06-5410-01A
0 years, female, white, stage:'--, dead, 108 days
81.5
TCGA-06-5412-01A
0 years, female, white, stage:'--, dead, 138 days
81.3
TCGA-06-0184-01A
0 years, male, white, stage:'--, dead, 2126 days
79.6
TCGA-28-5215-01A
0 years, female, white, stage:'--, dead, 335 days
78.7
TCGA-06-5413-01A
0 years, male, white, stage:'--, alive, 268 days
77.6
TCGA-12-5299-01A
0 years, female, white, stage:'--, dead, 98 days
77.0
TCGA-02-0055-01A
0 years, female, white, stage:'--, dead, 76 days
75.5
TCGA-28-5208-01A
0 years, male, white, stage:'--, dead, 544 days
73.6
TCGA-28-2509-01A
0 years, female, white, stage:'--, alive, 145 days
73.3
TCGA-41-2572-01A
0 years, male, white, stage:'--, dead, 406 days
71.5
TCGA-12-0619-01A
0 years, male, white, stage:'--, dead, 1062 days
71.2
TCGA-06-0644-01A
0 years, male, black or african american, stage:'--, dead, 384 days
69.2
TCGA-27-2519-01A
0 years, male, white, stage:'--, dead, 550 days
68.9
TCGA-76-4925-01A
0 years, male, white, stage:'--, dead, 146 days
68.2
TCGA-06-0190-01A
0 years, male, white, stage:'--, dead, 317 days
67.5
TCGA-14-0817-01A
0 years, female, white, stage:'--, dead, 164 days
64.6
TCGA-14-1034-01A
0 years, female, stage:'--, dead, 485 days
63.6
TCGA-12-3652-01A
0 years, male, white, stage:'--, dead, 1062 days
61.4
TCGA-14-0871-01A
0 years, female, white, stage:'--, dead, 880 days
59.7
TCGA-32-5222-01A
0 years, male, white, stage:'--, dead, 585 days
58.4
TCGA-12-5295-01A
0 years, female, white, stage:'--, dead, 454 days
57.3
TCGA-28-2513-01A
0 years, female, white, stage:'--, alive, 222 days
57.0
TCGA-06-0178-01A
0 years, male, white, stage:'--, dead, 2681 days
56.6
TCGA-19-4065-01A
0 years, male, white, stage:'--, alive, 214 days
56.0
TCGA-41-3915-01A
0 years, male, white, stage:'--, dead, 360 days
55.9
TCGA-26-5133-01A
0 years, male, white, stage:'--, alive, 452 days
53.3
TCGA-27-1832-01A
0 years, female, white, stage:'--, dead, 300 days
53.3
TCGA-06-0130-01A
0 years, male, white, stage:'--, dead, 394 days
53.3
TCGA-27-2526-01A
0 years, female, white, stage:'--, dead, 87 days
52.7
TCGA-27-1835-01A
0 years, female, white, stage:'--, dead, 648 days
51.6
TCGA-14-2554-01A
0 years, female, white, stage:'--, dead, 532 days
49.2
TCGA-19-2629-01A
0 years, male, white, stage:'--, dead, 737 days
45.4
TCGA-06-2569-01A
0 years, female, black or african american, stage:'--, alive, 13 days
43.7
TCGA-14-1829-01A
0 years, male, black or african american, stage:'--, alive, 218 days
42.8
TCGA-32-2616-01A
0 years, female, white, stage:'--, dead, 224 days
39.5
TCGA-28-5218-01A
0 years, male, white, stage:'--, dead, 157 days
37.8
TCGA-27-2524-01A
0 years, male, white, stage:'--, dead, 231 days
37.5
TCGA-14-1823-01A
0 years, female, white, stage:'--, dead, 543 days
36.2
TCGA-32-4213-01A
0 years, female, white, stage:'--, alive, 604 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VAMP2 is not prognostic in Glioblastoma Multiforme (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
3-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
3-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.1
Number of samples
58
Samples
Sample
Description
TPM
AK088
N, NA, stage:NA, dead, 360 days
25.5
AK015
N, NA, stage:NA, alive, 720 days
22.0
AK158
N, NA, stage:NA, dead, 360 days
21.1
AK099
N, NA, stage:NA, dead, 420 days
18.8
AK134
N, NA, stage:NA, dead, 360 days
18.0
AK226
N, NA, stage:NA, dead, 360 days
17.6
AK081
N, NA, stage:NA, dead, 180 days
16.4
AK149
N, NA, stage:NA, dead, 420 days
15.4
AK085
N, NA, stage:NA, alive, 660 days
15.1
AK102
N, NA, stage:NA, alive, 1740 days
14.0
AK173
N, NA, stage:NA, dead, 180 days
13.6
AK100
N, NA, stage:NA, alive, 960 days
12.6
AK041
N, NA, stage:NA, alive, 810 days
11.6
AK089
N, NA, stage:NA, dead, 330 days
11.4
AK043
N, NA, stage:NA, alive, 660 days
10.7
AK079
N, NA, stage:NA, dead, 210 days
10.7
AK002
N, NA, stage:NA, dead, 570 days
10.4
AK035
N, NA, stage:NA, dead, 210 days
10.1
AK091
N, NA, stage:NA, dead, 210 days
9.6
AK005
N, NA, stage:NA, dead, 240 days
9.6
AK030
N, NA, stage:NA, dead, 120 days
9.5
AK195
N, NA, stage:NA, dead, 390 days
9.1
AK123
N, NA, stage:NA, dead, 180 days
9.0
AK003
N, NA, stage:NA, dead, 600 days
9.0
AK167
N, NA, stage:NA, dead, 180 days
8.9
AK103
N, NA, stage:NA, alive, 1320 days
8.9
AK055
N, NA, stage:NA, dead, 240 days
8.9
AK205
N, NA, stage:NA, dead, 120 days
8.8
AK076
N, NA, stage:NA, alive, 660 days
8.2
AK006
N, NA, stage:NA, dead, 360 days
7.8
AK218
N, NA, stage:NA, dead, 180 days
7.7
AK117
N, NA, stage:NA, dead, 210 days
7.3
AK216
N, NA, stage:NA, dead, 360 days
7.1
AK227
N, NA, stage:NA, alive, 300 days
7.0
AK071
N, NA, stage:NA, dead, 540 days
6.7
AK178
N, NA, stage:NA, dead, 240 days
6.7
AK053
N, NA, stage:NA, dead, 300 days
6.6
AK066
N, NA, stage:NA, alive, 960 days
6.5
AK124
N, NA, stage:NA, alive, 1920 days
6.4
AK213
N, NA, stage:NA, alive, 2010 days
6.1
AK049
N, NA, stage:NA, dead, 180 days
6.1
AK165
N, NA, stage:NA, alive, 360 days
5.9
AK072
N, NA, stage:NA, dead, 150 days
5.9
AK142
N, NA, stage:NA, alive, 90 days
5.6
AK051
N, NA, stage:NA, dead, 360 days
5.2
AK231
N, NA, stage:NA, dead, 240 days
5.2
AK188
N, NA, stage:NA, alive, 420 days
4.7
AK068
N, NA, stage:NA, alive, 360 days
4.7
AK236
N, NA, stage:NA, dead, 360 days
4.6
AK098
N, NA, stage:NA, dead, 660 days
4.4
AK133
N, NA, stage:NA, dead, 360 days
4.1
AK156
N, NA, stage:NA, dead, 330 days
3.9
AK199
N, NA, stage:NA, alive, 1860 days
3.9
AK185
N, NA, stage:NA, alive, 330 days
3.8
AK074
N, NA, stage:NA, alive, 300 days
3.6
AK183
N, NA, stage:NA, alive, 360 days
3.5
AK139
N, NA, stage:NA, dead, 270 days
3.3
AK153
N, NA, stage:NA, dead, 240 days
2.7
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GLIOBLASTOMA MULTIFORME - Protein relative expression (CPTAC)
Number of samples
110
Samples
Sample ID
Sample type
nRPX
CPT0204370003
Normal
2.2
CPT0204420003
Normal
2.0
CPT0204380003
Normal
1.9
CPT0204340003
Normal
1.8
CPT0204360003
Normal
1.8
CPT0204400003
Normal
1.8
CPT0204410003
Normal
1.6
CPT0204390003
Normal
1.6
CPT0204350003
Normal
1.5
CPT0204330003
Normal
1.3
CPT0206110003
Tumor
0.8
CPT0206330003
Tumor
0.5
CPT0104330003
Tumor
0.5
CPT0224330003
Tumor
0.5
CPT0168270003
Tumor
0.4
CPT0207030003
Tumor
0.4
CPT0206880003
Tumor
0.3
CPT0218890004
Tumor
0.3
CPT0201710003
Tumor
0.2
CPT0182550003
Tumor
0.2
CPT0162140003
Tumor
0.1
CPT0189250003
Tumor
0.1
CPT0064650003
Tumor
0.1
CPT0206450003
Tumor
0.1
CPT0199770003
Tumor
0.0
CPT0209440003
Tumor
0.0
CPT0189650004
Tumor
0.0
CPT0182580003
Tumor
0.0
CPT0205670004
Tumor
-0.1
CPT0217000004
Tumor
-0.1
CPT0217880003
Tumor
-0.1
CPT0168720003
Tumor
-0.1
CPT0125510003
Tumor
-0.1
CPT0189850004
Tumor
-0.1
CPT0087730003
Tumor
-0.1
CPT0162020003
Tumor
-0.1
CPT0104220003
Tumor
-0.2
CPT0189460003
Tumor
-0.2
CPT0125570003
Tumor
-0.2
CPT0190240004
Tumor
-0.2
CPT0167860004
Tumor
-0.2
CPT0092440003
Tumor
-0.2
CPT0168590003
Tumor
-0.2
CPT0216920008
Tumor
-0.2
CPT0205570003
Tumor
-0.2
CPT0087950003
Tumor
-0.3
CPT0196850003
Tumor
-0.3
CPT0186100003
Tumor
-0.3
CPT0125220003
Tumor
-0.3
CPT0208980003
Tumor
-0.3
CPT0218960004
Tumor
-0.4
CPT0225760003
Tumor
-0.4
CPT0079790003
Tumor
-0.4
CPT0218670003
Tumor
-0.4
CPT0221180003
Tumor
-0.4
CPT0071100003
Tumor
-0.4
CPT0064890003
Tumor
-0.4
CPT0167750004
Tumor
-0.4
CPT0162100003
Tumor
-0.4
CPT0219080004
Tumor
-0.4
CPT0171580008
Tumor
-0.5
CPT0205890003
Tumor
-0.5
CPT0218690004
Tumor
-0.5
CPT0206230003
Tumor
-0.5
CPT0087570003
Tumor
-0.5
CPT0205450004
Tumor
-0.5
CPT0218770003
Tumor
-0.5
CPT0182500003
Tumor
-0.5
CPT0190360004
Tumor
-0.6
CPT0189750004
Tumor
-0.6
CPT0217100003
Tumor
-0.6
CPT0225730003
Tumor
-0.7
CPT0168830003
Tumor
-0.7
CPT0089150003
Tumor
-0.8
CPT0093360003
Tumor
-0.8
CPT0168380003
Tumor
-0.8
CPT0217060003
Tumor
-0.8
CPT0093550003
Tumor
-0.8
CPT0002410011
Tumor
-0.8
CPT0093590003
Tumor
-0.8
CPT0161730003
Tumor
-0.8
CPT0189570004
Tumor
-0.8
CPT0206780003
Tumor
-0.9
CPT0127420003
Tumor
-0.9
CPT0218330004
Tumor
-0.9
CPT0168480003
Tumor
-0.9
CPT0087680003
Tumor
-0.9
CPT0217430008
Tumor
-0.9
CPT0224600003
Tumor
-0.9
CPT0175060003
Tumor
-0.9
CPT0167640003
Tumor
-1.0
CPT0217190003
Tumor
-1.0
CPT0093510003
Tumor
-1.1
CPT0205780003
Tumor
-1.1
CPT0127480003
Tumor
-1.1
CPT0167970003
Tumor
-1.1
CPT0218830004
Tumor
-1.1
CPT0168080003
Tumor
-1.1
CPT0217710008
Tumor
-1.1
CPT0123530003
Tumor
-1.1
CPT0224540004
Tumor
-1.1
CPT0167530003
Tumor
-1.2
CPT0207090003
Tumor
-1.2
CPT0206000004
Tumor
-1.2
CPT0206560003
Tumor
-1.2
CPT0224390004
Tumor
-1.3
CPT0078580003
Tumor
-1.3
CPT0228220003
Tumor
-1.3
CPT0206670004
Tumor
-1.3
CPT0093450003
Tumor
-1.6
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GLIOMA - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.