BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:10.1 nTPM
HPA Brain:5.2 nTPM
GTEx:10.1 nTPM
Pig:0.2 nTPM
Mouse:0.2 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA049855
Glial cells Low
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 5.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.8
2289 Male, age 61, right hemisphere 7.4
1854 Male, age 80, left hemisphere 7.0
1781 Male, age 74, unknown 4.7
1857 Female, age 85, left hemisphere 4.4
2288 Male, age 75, left hemisphere 4.3
2290 Female, age 72, unknown 4.3
2846 Female, age 79, unknown 4.3
2481 Female, age 94, left hemisphere 2.5
Globus pallidus, externus
nTPM: 2.8
2646 Male, age 61, right hemisphere 4.2
2567 Female, age 72, unknown 3.6
2395 Male, age 75, both hemispheres 2.3
1996 Male, age 80, right hemisphere 2.0
2772 Female, age 79, unknown 2.0
Globus pallidus, internus
nTPM: 2.3
2111 Female, age 85, right hemisphere 2.9
2037 Male, age 80, right hemisphere 2.8
2566 Female, age 72, unknown 2.7
1818 Male, age 74, unknown 2.4
2483 Female, age 94, right hemisphere 2.3
2778 Female, age 91, both hemispheres 2.3
2287 Male, age 75, right hemisphere 1.0
Nucleus accumbens
nTPM: 5.2
2824 Male, age 61, right hemisphere 7.6
1856 Female, age 91, right hemisphere 6.1
1806 Female, age 85, left hemisphere 5.8
1783 Male, age 74, unknown 5.5
2732 Male, age 80, right hemisphere 5.1
2286 Male, age 75, left hemisphere 4.3
2391 Female, age 94, left hemisphere 3.8
2698 Female, age 72, unknown 3.5
Nucleus basalis of Meynert
nTPM: 5.0
2393 Male, age 80, right hemisphere 5.5
2484 Female, age 94, left hemisphere 5.1
2569 Male, age 61, both hemispheres 5.0
2821 Male, age 75, both hemispheres 4.2
Nucleus of the diagonal band
nTPM: 4.5
2029 Male, age 61, right hemisphere 5.8
1979 Male, age 74, unknown 4.8
2195 Female, age 85, both hemispheres 4.4
2775 Male, age 80, right hemisphere 4.4
1812 Female, age 91, both hemispheres 3.4
Putamen
nTPM: 5.2
1838 Male, age 80, right hemisphere 7.9
1937 Female, age 91, right hemisphere 6.5
2647 Male, age 75, left hemisphere 6.3
2466 Female, age 79, unknown 4.7
2489 Female, age 72, unknown 4.6
1829 Male, age 74, unknown 3.4
2482 Female, age 94, left hemisphere 3.1
Septal nuclei
nTPM: 4.7
2009 Female, age 91, both hemispheres 5.5
2059 Female, age 85, both hemispheres 5.2
2394 Male, age 61, left hemisphere 5.2
2199 Male, age 80, right hemisphere 4.3
2031 Female, age 72, unknown 4.2
2629 Female, age 94, right hemisphere 4.1
1960 Male, age 74, unknown 4.0
Stria terminalis, bed nucleus
nTPM: 5.1
2486 Female, age 94, both hemispheres 6.2
2201 Male, age 74, unknown 5.2
1974 Female, age 91, both hemispheres 3.9

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 10.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6.8
Samples: 246

Max nTPM: 17.7
Min nTPM: 0.9
Std nTPM: 2.9
Median nTPM: 6.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 17.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 17.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 14.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 14.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 14.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 14.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 14.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 13.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 12.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 12.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 12.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.1
Samples: 246

Max nTPM: 36.8
Min nTPM: 1.8
Std nTPM: 5.7
Median nTPM: 9.0
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 36.8
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 30.1
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 25.8
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 25.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 24.4
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 24.4
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 23.6
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 22.4
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 21.6
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 21.4
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 21.2
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Brain - Putamen (basal ganglia)
Average nTPM: 6.2
Samples: 205

Max nTPM: 17.2
Min nTPM: 1.2
Std nTPM: 2.9
Median nTPM: 5.9
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 17.2
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 16.3
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 13.7
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 13.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 13.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 13.0
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 12.7
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 12.3
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 12.2
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 12.0
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 11.9
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BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 0.2
Pig sample Sample description nTPM
Caudate
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Female 0.2
Sample B Female 0.1
Sample C Male 0.0
Sample D Male 0.2
Putamen
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.2
Sample C Male 0.0
Sample D Male 0.3
Septum
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.1
Sample C Male 0.1
Sample D Male 0.1
Ventral pallidum
nTPM: 0.2
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.1
Sample C Male 0.4
Sample D Male 0.2

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 0.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.2
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.6
Sample C Female 0.0
Sample D Female 0.0
Septum
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.1
Ventral forebrain
nTPM: 0.2
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.0
Sample A Male 0.4
Sample B Male 0.0
Sample C Female 0.4
Sample D Female 0.0

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
100144104 Antisense, RP_110407_03_B05, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
100144104 Antisense, RP_110407_03_B05, Mouse strain C57BL/6J (56 days, male) 0.1

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