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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZNF579 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
32.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
19.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
8.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
6.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
6.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
5.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
4.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
4.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
4.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
3.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
3.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
3.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
2.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
1.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZNF579 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.7
Number of samples
231
Samples
Sample
Description
TPM
DO45289
0 years, female, NA, stage:3, alive, 360 days
31.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
22.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
22.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
17.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
17.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
6.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
4.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
4.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
4.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
3.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
3.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
3.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
3.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
3.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
3.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
2.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
2.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
2.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
2.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
2.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
2.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
2.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
1.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
1.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
1.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
1.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
1.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
1.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
967
Tumor
1.5
567
Tumor
1.5
661
Tumor
1.4
545
Tumor
1.4
497
Tumor
1.3
813
Tumor
1.3
965
Tumor
1.2
1025
Tumor
1.1
737
Tumor
1.1
231
Tumor
1.1
817
Tumor
1.0
297
Tumor
0.9
823
Tumor
0.9
331
Tumor
0.9
951
Tumor
0.9
921
Tumor
0.8
427
Tumor
0.8
123
Tumor
0.8
343
Tumor
0.8
213
Tumor
0.8
557
Tumor
0.7
221
Tumor
0.7
743
Tumor
0.7
975
Tumor
0.7
814
Normal
0.6
112
Tumor
0.6
393
Tumor
0.6
267
Tumor
0.6
127
Tumor
0.6
533
Tumor
0.6
923
Tumor
0.6
126
Normal
0.6
671
Tumor
0.6
277
Tumor
0.6
285
Tumor
0.6
527
Tumor
0.5
777
Tumor
0.5
465
Tumor
0.5
128
Normal
0.5
468
Normal
0.5
283
Tumor
0.5
473
Tumor
0.5
917
Tumor
0.5
125
Tumor
0.5
881
Tumor
0.5
1041
Tumor
0.5
124
Normal
0.5
477
Tumor
0.5
851
Tumor
0.5
451
Tumor
0.5
385
Tumor
0.5
114
Normal
0.5
455
Tumor
0.5
113
Tumor
0.4
192
Normal
0.4
411
Tumor
0.4
515
Tumor
0.4
354
Normal
0.4
358
Normal
0.4
467
Tumor
0.4
513
Tumor
0.4
1042
Normal
0.4
425
Tumor
0.4
131
Tumor
0.4
571
Tumor
0.4
423
Tumor
0.4
387
Tumor
0.4
1032
Normal
0.4
727
Tumor
0.4
351
Tumor
0.4
111
Normal
0.4
663
Tumor
0.4
523
Tumor
0.4
456
Normal
0.4
217
Tumor
0.3
572
Normal
0.3
635
Tumor
0.3
648
Normal
0.3
815
Tumor
0.3
421
Tumor
0.3
568
Normal
0.3
537
Tumor
0.3
911
Tumor
0.3
877
Tumor
0.3
641
Tumor
0.3
268
Normal
0.3
352
Normal
0.3
491
Tumor
0.3
422
Normal
0.3
342
Normal
0.3
1031
Tumor
0.3
258
Normal
0.3
452
Normal
0.3
195
Tumor
0.3
642
Normal
0.3
227
Tumor
0.3
685
Tumor
0.3
983
Tumor
0.2
426
Normal
0.2
785
Tumor
0.2
191
Tumor
0.2
618
Normal
0.2
1021
Tumor
0.2
982
Normal
0.2
391
Tumor
0.2
463
Tumor
0.2
341
Tumor
0.2
524
Normal
0.2
493
Tumor
0.2
957
Tumor
0.2
464
Normal
0.2
525
Tumor
0.2
361
Tumor
0.2
627
Tumor
0.2
883
Tumor
0.2
355
Tumor
0.2
428
Normal
0.2
461
Tumor
0.2
344
Normal
0.2
222
Normal
0.2
218
Normal
0.2
395
Tumor
0.2
698
Normal
0.2
376
Normal
0.2
447
Tumor
0.2
312
Normal
0.2
271
Tumor
0.1
257
Tumor
0.1
478
Normal
0.1
615
Tumor
0.1
535
Tumor
0.1
262
Normal
0.1
357
Tumor
0.1
745
Tumor
0.1
328
Normal
0.1
958
Normal
0.1
574
Normal
0.1
665
Tumor
0.1
664
Normal
0.1
298
Normal
0.1
196
Normal
0.1
1022
Normal
0.1
214
Normal
0.1
311
Tumor
0.1
666
Normal
0.1
617
Tumor
0.1
386
Normal
0.1
564
Normal
0.1
558
Normal
0.1
647
Tumor
0.1
424
Normal
0.1
714
Normal
0.1
978
Normal
0.1
363
Tumor
0.1
278
Normal
0.1
313
Tumor
0.1
414
Normal
0.1
882
Normal
0.1
332
Normal
0.1
138
Normal
0.1
483
Tumor
0.1
384
Normal
0.1
723
Tumor
0.1
232
Normal
0.0
368
Normal
0.0
672
Normal
0.0
966
Normal
0.0
514
Normal
0.0
943
Tumor
0.0
956
Normal
0.0
365
Tumor
0.0
466
Normal
0.0
628
Normal
0.0
474
Normal
0.0
367
Tumor
0.0
878
Normal
0.0
538
Normal
0.0
396
Normal
0.0
492
Normal
0.0
857
Tumor
0.0
394
Normal
0.0
388
Normal
0.0
223
Tumor
0.0
1028
Normal
0.0
724
Normal
0.0
916
Normal
0.0
366
Normal
0.0
162
Normal
0.0
816
Normal
0.0
224
Normal
0.0
1016
Normal
0.0
976
Normal
0.0
272
Normal
0.0
963
Tumor
0.0
1026
Normal
0.0
738
Normal
0.0
662
Normal
0.0
261
Tumor
0.0
536
Normal
0.0
636
Normal
0.0
146
Normal
0.0
1014
Normal
0.0
517
Tumor
-0.1
484
Normal
-0.1
362
Normal
-0.1
472
Normal
-0.1
553
Tumor
-0.1
863
Tumor
-0.1
964
Normal
-0.1
228
Normal
-0.1
697
Tumor
-0.1
314
Normal
-0.1
852
Normal
-0.1
984
Normal
-0.1
742
Normal
-0.1
364
Normal
-0.1
353
Tumor
-0.1
744
Normal
-0.1
938
Normal
-0.1
518
Normal
-0.1
884
Normal
-0.1
786
Normal
-0.1
462
Normal
-0.1
914
Normal
-0.1
954
Normal
-0.1
1027
Tumor
-0.1
516
Normal
-0.1
563
Tumor
-0.1
482
Normal
-0.1
412
Normal
-0.1
534
Normal
-0.1
327
Tumor
-0.1
132
Normal
-0.2
756
Normal
-0.2
392
Normal
-0.2
741
Tumor
-0.2
375
Tumor
-0.2
498
Normal
-0.2
413
Tumor
-0.2
953
Tumor
-0.2
284
Normal
-0.2
416
Normal
-0.2
188
Normal
-0.2
968
Normal
-0.2
858
Normal
-0.2
526
Normal
-0.2
286
Normal
-0.2
136
Normal
-0.2
383
Tumor
-0.2
1013
Tumor
-0.2
746
Normal
-0.2
481
Tumor
-0.2
471
Tumor
-0.2
616
Normal
-0.2
1043
Tumor
-0.2
488
Normal
-0.2
172
Normal
-0.2
728
Normal
-0.2
924
Normal
-0.2
912
Normal
-0.2
356
Normal
-0.2
554
Normal
-0.2
212
Normal
-0.2
573
Tumor
-0.3
977
Tumor
-0.3
546
Normal
-0.3
981
Tumor
-0.3
952
Normal
-0.3
528
Normal
-0.3
778
Normal
-0.3
135
Tumor
-0.3
944
Normal
-0.3
937
Tumor
-0.3
145
Tumor
-0.3
955
Tumor
-0.4
696
Normal
-0.4
142
Normal
-0.4
1015
Tumor
-0.4
494
Normal
-0.4
415
Tumor
-0.4
922
Normal
-0.4
187
Tumor
-0.4
1045
Tumor
-0.4
695
Tumor
-0.4
865
Tumor
-0.4
721
Tumor
-0.4
141
Tumor
-0.4
918
Normal
-0.5
755
Tumor
-0.5
686
Normal
-0.5
713
Tumor
-0.5
1046
Normal
-0.5
137
Tumor
-0.5
874
Normal
-0.5
861
Tumor
-0.5
448
Normal
-0.5
211
Tumor
-0.5
715
Tumor
-0.5
161
Tumor
-0.5
915
Tumor
-0.6
824
Normal
-0.6
148
Normal
-0.6
1044
Normal
-0.6
862
Normal
-0.6
913
Tumor
-0.6
818
Normal
-0.6
926
Normal
-0.6
186
Normal
-0.6
716
Normal
-0.6
873
Tumor
-0.7
866
Normal
-0.7
864
Normal
-0.7
925
Tumor
-0.8
722
Normal
-0.8
867
Tumor
-0.8
868
Normal
-0.8
147
Tumor
-0.9
185
Tumor
-0.9
171
Tumor
-1.0
487
Tumor
-1.2
431
Tumor
N/A
432
Normal
N/A
433
Tumor
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
